data_4KIJ # _model_server_result.job_id DXmzo5vTnzIFizPO_tizZg _model_server_result.datetime_utc '2025-01-02 22:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4KIJ # _exptl.entry_id 4KIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,4-dihydroxy-5-(3-nitrophenoxy)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KIJ _cell.length_a 126.98 _cell.length_b 126.98 _cell.length_c 126.98 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 4 'crystal symmetry operation' 16_545 x,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 -63.49 63.49 5 'crystal symmetry operation' 19_545 -z,-x-1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 0 -63.49 63.49 6 'crystal symmetry operation' 21_545 y,z-1/2,x+1/2 0 1 0 0 0 1 1 0 0 0 -63.49 63.49 7 'crystal symmetry operation' 27_455 -x-1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -63.49 0 63.49 8 'crystal symmetry operation' 29_455 z-1/2,x,y+1/2 0 0 1 1 0 0 0 1 0 -63.49 0 63.49 9 'crystal symmetry operation' 36_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -63.49 0 63.49 10 'crystal symmetry operation' 38_445 -x-1/2,-y-1/2,z -1 0 0 0 -1 0 0 0 1 -63.49 -63.49 0 11 'crystal symmetry operation' 42_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -63.49 -63.49 0 12 'crystal symmetry operation' 46_445 -y-1/2,z-1/2,-x 0 -1 0 0 0 1 -1 0 0 -63.49 -63.49 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H9 N O7' _chem_comp.formula_weight 291.213 _chem_comp.id KIJ _chem_comp.mon_nstd_flag . _chem_comp.name '3,4-dihydroxy-5-(3-nitrophenoxy)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAP KIJ sing 173 n n OAD CAT KIJ sing 174 n n CAP CAT KIJ doub 175 n y CAP CAJ KIJ sing 176 n y CAT CAS KIJ sing 177 n y CAH CAG KIJ doub 178 n y CAH CAO KIJ sing 179 n y CAG CAI KIJ sing 180 n y CAJ CAQ KIJ doub 181 n y CAS OAM KIJ sing 182 n n CAS CAL KIJ doub 183 n y OAM CAO KIJ sing 184 n n CAO CAK KIJ doub 185 n y CAI CAR KIJ doub 186 n y CAQ CAL KIJ sing 187 n y CAQ CAN KIJ sing 188 n n CAK CAR KIJ sing 189 n y CAR NAU KIJ sing 190 n n OAA CAN KIJ doub 191 n n CAN OAB KIJ sing 192 n n NAU OAF KIJ sing 193 n n NAU OAE KIJ doub 194 n n OAD H1 KIJ sing 195 n n OAC H2 KIJ sing 196 n n CAJ H3 KIJ sing 197 n n OAB H4 KIJ sing 198 n n CAL H5 KIJ sing 199 n n CAK H6 KIJ sing 200 n n CAH H7 KIJ sing 201 n n CAG H8 KIJ sing 202 n n CAI H9 KIJ sing 203 n n # _atom_sites.entry_id 4KIJ _atom_sites.fract_transf_matrix[1][1] 0.007875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 3 KIJ A 1 202 1 KIJ KIJ . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 3 HOH HOH . D 4 HOH A 3 303 4 HOH HOH . D 4 HOH A 4 304 5 HOH HOH . D 4 HOH A 5 305 6 HOH HOH . D 4 HOH A 6 306 7 HOH HOH . D 4 HOH A 7 307 8 HOH HOH . D 4 HOH A 8 308 9 HOH HOH . D 4 HOH A 9 309 10 HOH HOH . D 4 HOH A 10 310 13 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 312 15 HOH HOH . D 4 HOH A 13 313 17 HOH HOH . D 4 HOH A 14 314 18 HOH HOH . D 4 HOH A 15 315 20 HOH HOH . D 4 HOH A 16 316 22 HOH HOH . D 4 HOH A 17 317 23 HOH HOH . D 4 HOH A 18 318 25 HOH HOH . D 4 HOH A 19 319 27 HOH HOH . D 4 HOH A 20 320 29 HOH HOH . D 4 HOH A 21 321 32 HOH HOH . D 4 HOH A 22 322 34 HOH HOH . D 4 HOH A 23 323 35 HOH HOH . D 4 HOH A 24 324 37 HOH HOH . D 4 HOH A 25 325 38 HOH HOH . D 4 HOH A 26 326 44 HOH HOH . D 4 HOH A 27 327 45 HOH HOH . D 4 HOH A 28 328 49 HOH HOH . D 4 HOH A 29 329 2 HOH HOH . D 4 HOH A 30 330 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD KIJ . . . C 3 -28.299 -17.343 53.03 1 36.11 ? OAD KIJ 202 A 1 HETATM 2 C CAT KIJ . . . C 3 -28.73 -18.088 54.112 1 38.81 ? CAT KIJ 202 A 1 HETATM 3 C CAP KIJ . . . C 3 -29.264 -19.381 53.909 1 37.02 ? CAP KIJ 202 A 1 HETATM 4 O OAC KIJ . . . C 3 -29.363 -19.873 52.648 1 35.88 ? OAC KIJ 202 A 1 HETATM 5 C CAJ KIJ . . . C 3 -29.678 -20.159 54.978 1 35.19 ? CAJ KIJ 202 A 1 HETATM 6 C CAQ KIJ . . . C 3 -29.574 -19.64 56.256 1 34.96 ? CAQ KIJ 202 A 1 HETATM 7 C CAN KIJ . . . C 3 -29.994 -20.388 57.33 1 34.7 ? CAN KIJ 202 A 1 HETATM 8 O OAB KIJ . . . C 3 -29.323 -20.385 58.375 1 35.51 ? OAB KIJ 202 A 1 HETATM 9 O OAA KIJ . . . C 3 -31.041 -21.059 57.268 1 34.95 ? OAA KIJ 202 A 1 HETATM 10 C CAL KIJ . . . C 3 -29.059 -18.365 56.484 1 37.57 ? CAL KIJ 202 A 1 HETATM 11 C CAS KIJ . . . C 3 -28.651 -17.558 55.424 1 40.28 ? CAS KIJ 202 A 1 HETATM 12 O OAM KIJ . . . C 3 -28.096 -16.301 55.652 1 44.77 ? OAM KIJ 202 A 1 HETATM 13 C CAO KIJ . . . C 3 -28.712 -15.056 55.796 1 44.26 ? CAO KIJ 202 A 1 HETATM 14 C CAK KIJ . . . C 3 -28.934 -14.426 57.04 1 44.25 ? CAK KIJ 202 A 1 HETATM 15 C CAH KIJ . . . C 3 -29.037 -14.348 54.654 1 44.49 ? CAH KIJ 202 A 1 HETATM 16 C CAG KIJ . . . C 3 -29.61 -13.083 54.756 1 46.88 ? CAG KIJ 202 A 1 HETATM 17 C CAI KIJ . . . C 3 -29.848 -12.48 55.984 1 44.49 ? CAI KIJ 202 A 1 HETATM 18 C CAR KIJ . . . C 3 -29.511 -13.144 57.147 1 43.59 ? CAR KIJ 202 A 1 HETATM 19 N NAU KIJ . . . C 3 -29.798 -12.535 58.321 1 44.99 ? NAU KIJ 202 A 1 HETATM 20 O OAF KIJ . . . C 3 -30.359 -11.032 58.368 1 43.87 ? OAF KIJ 202 A 1 HETATM 21 O OAE KIJ . . . C 3 -29.742 -13.263 59.592 1 42.83 ? OAE KIJ 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #