data_4KJV # _model_server_result.job_id cxYjiWLqEAmM-HtexoO_4g _model_server_result.datetime_utc '2024-10-19 01:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 4KJV # _exptl.entry_id 4KJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.599 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-methoxy-5-({(3S)-3-[(N-methyl-L-alanyl)amino]-4-oxo-2',3,3',4,5',6'-hexahydro-5H-spiro[1,5-benzoxazepine-2,4'-pyran]-5-yl}methyl)naphthalene-2-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KJV _cell.length_a 74.196 _cell.length_b 74.196 _cell.length_c 108.564 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 50 A CYS 200 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A SG CYS 53 A CYS 203 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A NE2 HIS 70 A HIS 220 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc4 A SG CYS 77 A CYS 227 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 B SG CYS 50 C CYS 200 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B SG CYS 53 C CYS 203 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 B NE2 HIS 70 C HIS 220 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 B SG CYS 77 C CYS 227 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C30 H33 N3 O7' _chem_comp.formula_weight 547.599 _chem_comp.id 1RK _chem_comp.mon_nstd_flag . _chem_comp.name "6-methoxy-5-({(3S)-3-[(N-methyl-L-alanyl)amino]-4-oxo-2',3,3',4,5',6'-hexahydro-5H-spiro[1,5-benzoxazepine-2,4'-pyran]-5-yl}methyl)naphthalene-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 1RK sing 1 n n N1 C3 1RK sing 2 n n O8 C5 1RK doub 3 n n C3 C5 1RK sing 4 n n C3 C4 1RK sing 5 n n C5 N6 1RK sing 6 n n C19 C20 1RK doub 7 n y C19 C21 1RK sing 8 n y C20 C18 1RK sing 9 n y C21 C12 1RK doub 10 n y C22 C23 1RK sing 11 n n C22 C9 1RK sing 12 n n C18 C11 1RK doub 13 n y N6 C7 1RK sing 14 n n C23 O24 1RK sing 15 n n C7 C9 1RK sing 16 n n C7 C16 1RK sing 17 n n C12 C11 1RK sing 18 n y C12 N13 1RK sing 19 n n C11 O10 1RK sing 20 n n C9 O10 1RK sing 21 n n C9 C26 1RK sing 22 n n C29 O28 1RK sing 23 n n N13 C16 1RK sing 24 n n N13 C14 1RK sing 25 n n C16 O17 1RK doub 26 n n O28 C27 1RK sing 27 n n O24 C25 1RK sing 28 n n C14 C15 1RK sing 29 n n C26 C25 1RK sing 30 n n C27 C15 1RK doub 31 n y C27 C30 1RK sing 32 n y C15 C33 1RK sing 33 n y C30 C31 1RK doub 34 n y C33 C37 1RK doub 35 n y C33 C32 1RK sing 36 n y C37 C36 1RK sing 37 n y C31 C32 1RK sing 38 n y C32 C34 1RK doub 39 n y C36 C35 1RK doub 40 n y C34 C35 1RK sing 41 n y C35 C38 1RK sing 42 n n C38 O40 1RK doub 43 n n C38 O39 1RK sing 44 n n C29 H1 1RK sing 45 n n C29 H2 1RK sing 46 n n C29 H3 1RK sing 47 n n C30 H4 1RK sing 48 n n C31 H5 1RK sing 49 n n C34 H6 1RK sing 50 n n O39 H7 1RK sing 51 n n C36 H8 1RK sing 52 n n C37 H9 1RK sing 53 n n C14 H10 1RK sing 54 n n C14 H11 1RK sing 55 n n C21 H12 1RK sing 56 n n C19 H13 1RK sing 57 n n C20 H14 1RK sing 58 n n C18 H15 1RK sing 59 n n C22 H16 1RK sing 60 n n C22 H17 1RK sing 61 n n C23 H18 1RK sing 62 n n C23 H19 1RK sing 63 n n C25 H20 1RK sing 64 n n C25 H21 1RK sing 65 n n C26 H22 1RK sing 66 n n C26 H23 1RK sing 67 n n C7 H24 1RK sing 68 n n N6 H25 1RK sing 69 n n C3 H26 1RK sing 70 n n C4 H27 1RK sing 71 n n C4 H28 1RK sing 72 n n C4 H29 1RK sing 73 n n N1 H30 1RK sing 74 n n C2 H32 1RK sing 75 n n C2 H33 1RK sing 76 n n C2 H34 1RK sing 77 n n # _atom_sites.entry_id 4KJV _atom_sites.fract_transf_matrix[1][1] 0.013478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 501 ZN ZN . D 3 1RK A 1 502 1 1RK LIG . E 2 ZN C 1 301 501 ZN ZN . F 4 HOH A 1 601 1 HOH HOH . F 4 HOH A 2 602 2 HOH HOH . F 4 HOH A 3 603 3 HOH HOH . F 4 HOH A 4 604 4 HOH HOH . F 4 HOH A 5 605 5 HOH HOH . F 4 HOH A 6 606 6 HOH HOH . F 4 HOH A 7 607 7 HOH HOH . F 4 HOH A 8 608 8 HOH HOH . F 4 HOH A 9 609 9 HOH HOH . F 4 HOH A 10 610 10 HOH HOH . F 4 HOH A 11 611 11 HOH HOH . F 4 HOH A 12 612 13 HOH HOH . F 4 HOH A 13 613 18 HOH HOH . F 4 HOH A 14 614 19 HOH HOH . F 4 HOH A 15 615 21 HOH HOH . F 4 HOH A 16 616 22 HOH HOH . F 4 HOH A 17 617 23 HOH HOH . F 4 HOH A 18 618 27 HOH HOH . F 4 HOH A 19 619 30 HOH HOH . F 4 HOH A 20 620 34 HOH HOH . F 4 HOH A 21 621 37 HOH HOH . F 4 HOH A 22 622 38 HOH HOH . F 4 HOH A 23 623 39 HOH HOH . F 4 HOH A 24 624 40 HOH HOH . F 4 HOH A 25 625 42 HOH HOH . F 4 HOH A 26 626 43 HOH HOH . F 4 HOH A 27 627 45 HOH HOH . F 4 HOH A 28 628 46 HOH HOH . F 4 HOH A 29 629 47 HOH HOH . F 4 HOH A 30 630 48 HOH HOH . F 4 HOH A 31 631 49 HOH HOH . F 4 HOH A 32 632 50 HOH HOH . F 4 HOH A 33 633 53 HOH HOH . F 4 HOH A 34 634 59 HOH HOH . F 4 HOH A 35 635 62 HOH HOH . F 4 HOH A 36 636 63 HOH HOH . F 4 HOH A 37 637 64 HOH HOH . F 4 HOH A 38 638 65 HOH HOH . F 4 HOH A 39 639 66 HOH HOH . F 4 HOH A 40 640 67 HOH HOH . F 4 HOH A 41 641 68 HOH HOH . F 4 HOH A 42 642 69 HOH HOH . F 4 HOH A 43 643 70 HOH HOH . F 4 HOH A 44 644 71 HOH HOH . F 4 HOH A 45 645 72 HOH HOH . F 4 HOH A 46 646 73 HOH HOH . F 4 HOH A 47 647 74 HOH HOH . F 4 HOH A 48 648 78 HOH HOH . F 4 HOH A 49 649 79 HOH HOH . F 4 HOH A 50 650 80 HOH HOH . F 4 HOH A 51 651 81 HOH HOH . F 4 HOH A 52 652 82 HOH HOH . F 4 HOH A 53 653 83 HOH HOH . F 4 HOH A 54 654 87 HOH HOH . F 4 HOH A 55 655 88 HOH HOH . F 4 HOH A 56 656 89 HOH HOH . F 4 HOH A 57 657 90 HOH HOH . F 4 HOH A 58 658 91 HOH HOH . F 4 HOH A 59 659 96 HOH HOH . F 4 HOH A 60 660 100 HOH HOH . G 4 HOH C 1 601 12 HOH HOH . G 4 HOH C 2 602 14 HOH HOH . G 4 HOH C 3 603 15 HOH HOH . G 4 HOH C 4 604 16 HOH HOH . G 4 HOH C 5 605 17 HOH HOH . G 4 HOH C 6 606 20 HOH HOH . G 4 HOH C 7 607 24 HOH HOH . G 4 HOH C 8 608 25 HOH HOH . G 4 HOH C 9 609 26 HOH HOH . G 4 HOH C 10 610 28 HOH HOH . G 4 HOH C 11 611 29 HOH HOH . G 4 HOH C 12 612 31 HOH HOH . G 4 HOH C 13 613 32 HOH HOH . G 4 HOH C 14 614 33 HOH HOH . G 4 HOH C 15 615 35 HOH HOH . G 4 HOH C 16 616 36 HOH HOH . G 4 HOH C 17 617 41 HOH HOH . G 4 HOH C 18 618 44 HOH HOH . G 4 HOH C 19 619 51 HOH HOH . G 4 HOH C 20 620 52 HOH HOH . G 4 HOH C 21 621 54 HOH HOH . G 4 HOH C 22 622 55 HOH HOH . G 4 HOH C 23 623 56 HOH HOH . G 4 HOH C 24 624 57 HOH HOH . G 4 HOH C 25 625 58 HOH HOH . G 4 HOH C 26 626 60 HOH HOH . G 4 HOH C 27 627 61 HOH HOH . G 4 HOH C 28 628 75 HOH HOH . G 4 HOH C 29 629 76 HOH HOH . G 4 HOH C 30 630 77 HOH HOH . G 4 HOH C 31 631 84 HOH HOH . G 4 HOH C 32 632 85 HOH HOH . G 4 HOH C 33 633 86 HOH HOH . G 4 HOH C 34 634 92 HOH HOH . G 4 HOH C 35 635 93 HOH HOH . G 4 HOH C 36 636 94 HOH HOH . G 4 HOH C 37 637 95 HOH HOH . G 4 HOH C 38 638 97 HOH HOH . G 4 HOH C 39 639 98 HOH HOH . G 4 HOH C 40 640 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 1RK . . . D 3 27.844 28.045 10.776 1 36.4 ? C29 1RK 502 A 1 HETATM 2 O O28 1RK . . . D 3 27.859 29.448 11.116 1 34.5 ? O28 1RK 502 A 1 HETATM 3 C C27 1RK . . . D 3 28.505 29.9 12.272 1 35.77 ? C27 1RK 502 A 1 HETATM 4 C C30 1RK . . . D 3 29.31 29.085 13.09 1 37.67 ? C30 1RK 502 A 1 HETATM 5 C C31 1RK . . . D 3 29.897 29.591 14.248 1 39.2 ? C31 1RK 502 A 1 HETATM 6 C C32 1RK . . . D 3 29.708 30.965 14.583 1 41.83 ? C32 1RK 502 A 1 HETATM 7 C C34 1RK . . . D 3 30.289 31.511 15.738 1 41.39 ? C34 1RK 502 A 1 HETATM 8 C C35 1RK . . . D 3 30.126 32.871 16.12 1 37.73 ? C35 1RK 502 A 1 HETATM 9 C C38 1RK . . . D 3 30.732 33.409 17.267 1 46.82 ? C38 1RK 502 A 1 HETATM 10 O O40 1RK . . . D 3 30.387 34.534 17.729 1 50.16 ? O40 1RK 502 A 1 HETATM 11 O O39 1RK . . . D 3 31.611 32.767 17.871 1 53.48 ? O39 1RK 502 A 1 HETATM 12 C C36 1RK . . . D 3 29.322 33.702 15.321 1 38.59 ? C36 1RK 502 A 1 HETATM 13 C C37 1RK . . . D 3 28.761 33.17 14.164 1 32.87 ? C37 1RK 502 A 1 HETATM 14 C C33 1RK . . . D 3 28.913 31.804 13.771 1 35.24 ? C33 1RK 502 A 1 HETATM 15 C C15 1RK . . . D 3 28.317 31.292 12.616 1 31.27 ? C15 1RK 502 A 1 HETATM 16 C C14 1RK . . . D 3 27.489 32.12 11.814 1 31.72 ? C14 1RK 502 A 1 HETATM 17 N N13 1RK . . . D 3 28.294 33.162 11.047 1 32.71 ? N13 1RK 502 A 1 HETATM 18 C C16 1RK . . . D 3 27.932 34.497 11.052 1 37.88 ? C16 1RK 502 A 1 HETATM 19 O O17 1RK . . . D 3 27.002 34.904 11.804 1 34.04 ? O17 1RK 502 A 1 HETATM 20 C C12 1RK . . . D 3 29.451 32.756 10.347 1 35.15 ? C12 1RK 502 A 1 HETATM 21 C C21 1RK . . . D 3 29.459 31.599 9.554 1 38.1 ? C21 1RK 502 A 1 HETATM 22 C C19 1RK . . . D 3 30.621 31.23 8.818 1 37.56 ? C19 1RK 502 A 1 HETATM 23 C C20 1RK . . . D 3 31.771 32.022 8.898 1 40.54 ? C20 1RK 502 A 1 HETATM 24 C C18 1RK . . . D 3 31.809 33.169 9.716 1 36.71 ? C18 1RK 502 A 1 HETATM 25 C C11 1RK . . . D 3 30.615 33.536 10.415 1 37.77 ? C11 1RK 502 A 1 HETATM 26 O O10 1RK . . . D 3 30.742 34.684 11.2 1 35.83 ? O10 1RK 502 A 1 HETATM 27 C C9 1RK . . . D 3 30.062 35.877 10.773 1 37.09 ? C9 1RK 502 A 1 HETATM 28 C C22 1RK . . . D 3 30.834 36.497 9.621 1 41.05 ? C22 1RK 502 A 1 HETATM 29 C C23 1RK . . . D 3 32.034 37.28 10.171 1 41.38 ? C23 1RK 502 A 1 HETATM 30 O O24 1RK . . . D 3 31.832 38.025 11.349 1 40.37 ? O24 1RK 502 A 1 HETATM 31 C C25 1RK . . . D 3 31.39 37.231 12.399 1 39.4 ? C25 1RK 502 A 1 HETATM 32 C C26 1RK . . . D 3 29.969 36.783 11.991 1 32.56 ? C26 1RK 502 A 1 HETATM 33 C C7 1RK . . . D 3 28.635 35.481 10.201 1 34.58 ? C7 1RK 502 A 1 HETATM 34 N N6 1RK . . . D 3 27.728 36.614 9.859 1 32.34 ? N6 1RK 502 A 1 HETATM 35 C C5 1RK . . . D 3 26.894 36.569 8.808 1 31.43 ? C5 1RK 502 A 1 HETATM 36 O O8 1RK . . . D 3 26.814 35.621 8.013 1 33.55 ? O8 1RK 502 A 1 HETATM 37 C C3 1RK . . . D 3 25.859 37.73 8.782 1 32.62 ? C3 1RK 502 A 1 HETATM 38 C C4 1RK . . . D 3 24.683 37.385 9.806 1 28.52 ? C4 1RK 502 A 1 HETATM 39 N N1 1RK . . . D 3 25.323 37.914 7.442 1 36.48 ? N1 1RK 502 A 1 HETATM 40 C C2 1RK . . . D 3 26.322 38.371 6.408 1 35.71 ? C2 1RK 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #