data_4KKE # _model_server_result.job_id fSXArQuNb_c55CLnTtgJag _model_server_result.datetime_utc '2024-11-05 00:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4KKE # _exptl.entry_id 4KKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KKE _cell.length_a 51.979 _cell.length_b 71.311 _cell.length_c 107.631 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4KKE _atom_sites.fract_transf_matrix[1][1] 0.019239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 501 1 AMP AMP . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 4 HOH HOH . C 3 HOH A 4 604 5 HOH HOH . C 3 HOH A 5 605 6 HOH HOH . C 3 HOH A 6 606 7 HOH HOH . C 3 HOH A 7 607 8 HOH HOH . C 3 HOH A 8 608 9 HOH HOH . C 3 HOH A 9 609 10 HOH HOH . C 3 HOH A 10 610 11 HOH HOH . C 3 HOH A 11 611 12 HOH HOH . C 3 HOH A 12 612 13 HOH HOH . C 3 HOH A 13 613 14 HOH HOH . C 3 HOH A 14 614 15 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 18 HOH HOH . C 3 HOH A 18 618 19 HOH HOH . C 3 HOH A 19 619 20 HOH HOH . C 3 HOH A 20 620 21 HOH HOH . C 3 HOH A 21 621 22 HOH HOH . C 3 HOH A 22 622 23 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 27 HOH HOH . C 3 HOH A 27 627 29 HOH HOH . C 3 HOH A 28 628 30 HOH HOH . C 3 HOH A 29 629 31 HOH HOH . C 3 HOH A 30 630 32 HOH HOH . C 3 HOH A 31 631 33 HOH HOH . C 3 HOH A 32 632 34 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 36 HOH HOH . C 3 HOH A 35 635 37 HOH HOH . C 3 HOH A 36 636 38 HOH HOH . C 3 HOH A 37 637 39 HOH HOH . C 3 HOH A 38 638 41 HOH HOH . C 3 HOH A 39 639 43 HOH HOH . C 3 HOH A 40 640 45 HOH HOH . C 3 HOH A 41 641 46 HOH HOH . C 3 HOH A 42 642 47 HOH HOH . C 3 HOH A 43 643 48 HOH HOH . C 3 HOH A 44 644 49 HOH HOH . C 3 HOH A 45 645 50 HOH HOH . C 3 HOH A 46 646 51 HOH HOH . C 3 HOH A 47 647 52 HOH HOH . C 3 HOH A 48 648 53 HOH HOH . C 3 HOH A 49 649 54 HOH HOH . C 3 HOH A 50 650 55 HOH HOH . C 3 HOH A 51 651 56 HOH HOH . C 3 HOH A 52 652 57 HOH HOH . C 3 HOH A 53 653 58 HOH HOH . C 3 HOH A 54 654 59 HOH HOH . C 3 HOH A 55 655 60 HOH HOH . C 3 HOH A 56 656 61 HOH HOH . C 3 HOH A 57 657 62 HOH HOH . C 3 HOH A 58 658 65 HOH HOH . C 3 HOH A 59 659 66 HOH HOH . C 3 HOH A 60 660 68 HOH HOH . C 3 HOH A 61 661 69 HOH HOH . C 3 HOH A 62 662 70 HOH HOH . C 3 HOH A 63 663 71 HOH HOH . C 3 HOH A 64 664 72 HOH HOH . C 3 HOH A 65 665 74 HOH HOH . C 3 HOH A 66 666 75 HOH HOH . C 3 HOH A 67 667 76 HOH HOH . C 3 HOH A 68 668 78 HOH HOH . C 3 HOH A 69 669 79 HOH HOH . C 3 HOH A 70 670 80 HOH HOH . C 3 HOH A 71 671 85 HOH HOH . C 3 HOH A 72 672 87 HOH HOH . C 3 HOH A 73 673 88 HOH HOH . C 3 HOH A 74 674 90 HOH HOH . C 3 HOH A 75 675 91 HOH HOH . C 3 HOH A 76 676 92 HOH HOH . C 3 HOH A 77 677 94 HOH HOH . C 3 HOH A 78 678 96 HOH HOH . C 3 HOH A 79 679 97 HOH HOH . C 3 HOH A 80 680 98 HOH HOH . C 3 HOH A 81 681 101 HOH HOH . C 3 HOH A 82 682 102 HOH HOH . C 3 HOH A 83 683 103 HOH HOH . C 3 HOH A 84 684 104 HOH HOH . C 3 HOH A 85 685 105 HOH HOH . C 3 HOH A 86 686 106 HOH HOH . C 3 HOH A 87 687 107 HOH HOH . C 3 HOH A 88 688 108 HOH HOH . C 3 HOH A 89 689 109 HOH HOH . C 3 HOH A 90 690 110 HOH HOH . C 3 HOH A 91 691 111 HOH HOH . C 3 HOH A 92 692 113 HOH HOH . C 3 HOH A 93 693 114 HOH HOH . C 3 HOH A 94 694 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 3.788 21.164 30.791 1 37.18 ? P AMP 501 A 1 HETATM 2 O O1P AMP . . . B 2 4.112 21.492 29.39 1 44.68 ? O1P AMP 501 A 1 HETATM 3 O O2P AMP . . . B 2 4.869 21.286 31.763 1 36.77 ? O2P AMP 501 A 1 HETATM 4 O O3P AMP . . . B 2 2.719 20.203 31.057 1 37.84 ? O3P AMP 501 A 1 HETATM 5 O O5' AMP . . . B 2 2.932 22.514 31.041 1 35.91 ? O5' AMP 501 A 1 HETATM 6 C C5' AMP . . . B 2 1.708 22.743 30.361 1 32.88 ? C5' AMP 501 A 1 HETATM 7 C C4' AMP . . . B 2 1.537 24.264 30.221 1 30.67 ? C4' AMP 501 A 1 HETATM 8 O O4' AMP . . . B 2 1.847 24.95 31.457 1 28.6 ? O4' AMP 501 A 1 HETATM 9 C C3' AMP . . . B 2 2.542 24.83 29.186 1 28.73 ? C3' AMP 501 A 1 HETATM 10 O O3' AMP . . . B 2 2.002 24.754 27.874 1 27.68 ? O3' AMP 501 A 1 HETATM 11 C C2' AMP . . . B 2 2.65 26.278 29.615 1 27.52 ? C2' AMP 501 A 1 HETATM 12 O O2' AMP . . . B 2 1.537 27.008 29.129 1 25.01 ? O2' AMP 501 A 1 HETATM 13 C C1' AMP . . . B 2 2.561 26.189 31.136 1 26.63 ? C1' AMP 501 A 1 HETATM 14 N N9 AMP . . . B 2 3.881 26.151 31.751 1 26.52 ? N9 AMP 501 A 1 HETATM 15 C C8 AMP . . . B 2 4.617 25.114 32.153 1 26.1 ? C8 AMP 501 A 1 HETATM 16 N N7 AMP . . . B 2 5.755 25.591 32.652 1 25.76 ? N7 AMP 501 A 1 HETATM 17 C C5 AMP . . . B 2 5.733 26.925 32.586 1 26.74 ? C5 AMP 501 A 1 HETATM 18 C C6 AMP . . . B 2 6.608 27.884 32.969 1 27.23 ? C6 AMP 501 A 1 HETATM 19 N N6 AMP . . . B 2 7.767 27.508 33.519 1 26.66 ? N6 AMP 501 A 1 HETATM 20 N N1 AMP . . . B 2 6.363 29.186 32.779 1 26.96 ? N1 AMP 501 A 1 HETATM 21 C C2 AMP . . . B 2 5.152 29.525 32.183 1 28.37 ? C2 AMP 501 A 1 HETATM 22 N N3 AMP . . . B 2 4.256 28.537 31.808 1 27.24 ? N3 AMP 501 A 1 HETATM 23 C C4 AMP . . . B 2 4.57 27.257 32.013 1 27.01 ? C4 AMP 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #