data_4KKI # _model_server_result.job_id 8upVaXV5YWQdbDj1EQgcjw _model_server_result.datetime_utc '2025-07-31 00:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4KKI # _exptl.entry_id 4KKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KKI _cell.length_a 149.89 _cell.length_b 149.89 _cell.length_c 57.49 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 3 1_555 A SG CYS 265 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 105 A CYS 82 1_555 A SG CYS 308 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 155 A CYS 132 1_555 A SG CYS 197 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 388 A CYS 365 1_555 A SG CYS 393 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 216 A ASN 193 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 316 A ASN 293 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 337 A ASN 314 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 343 A ASN 320 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 349 A ASN 326 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 A ND2 ASN 354 A ASN 331 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 A ND2 ASN 369 A ASN 346 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 J CA CA . A CA 509 1_555 V O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 429 n n C1 O1 NAG sing 430 n n C1 O5 NAG sing 431 n n C1 H1 NAG sing 432 n n C2 C3 NAG sing 433 n n C2 N2 NAG sing 434 n n C2 H2 NAG sing 435 n n C3 C4 NAG sing 436 n n C3 O3 NAG sing 437 n n C3 H3 NAG sing 438 n n C4 C5 NAG sing 439 n n C4 O4 NAG sing 440 n n C4 H4 NAG sing 441 n n C5 C6 NAG sing 442 n n C5 O5 NAG sing 443 n n C5 H5 NAG sing 444 n n C6 O6 NAG sing 445 n n C6 H61 NAG sing 446 n n C6 H62 NAG sing 447 n n C7 C8 NAG sing 448 n n C7 N2 NAG sing 449 n n C7 O7 NAG doub 450 n n C8 H81 NAG sing 451 n n C8 H82 NAG sing 452 n n C8 H83 NAG sing 453 n n N2 HN2 NAG sing 454 n n O1 HO1 NAG sing 455 n n O3 HO3 NAG sing 456 n n O4 HO4 NAG sing 457 n n O6 HO6 NAG sing 458 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4KKI _atom_sites.fract_transf_matrix[1][1] 0.006672 _atom_sites.fract_transf_matrix[1][2] 0.003852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 500 NAG NAG . C 2 NAG A 1 502 502 NAG NAG . D 2 NAG A 1 503 503 NAG NAG . E 2 NAG A 1 504 503 NAG NAG . F 2 NAG A 1 505 504 NAG NAG . G 2 NAG A 1 506 506 NAG NAG . H 2 NAG A 1 507 506 NAG NAG . I 3 CNC A 1 508 507 CNC CNC . J 4 CA A 1 509 1 CA CA . K 5 PEG A 1 510 1 PEG PEG . L 5 PEG A 1 511 2 PEG PEG . M 5 PEG A 1 512 3 PEG PEG . N 5 PEG A 1 513 4 PEG PEG . O 5 PEG A 1 514 5 PEG PEG . P 5 PEG A 1 515 7 PEG PEG . Q 5 PEG A 1 516 8 PEG PEG . R 5 PEG A 1 517 10 PEG PEG . S 5 PEG A 1 518 11 PEG PEG . T 5 PEG A 1 519 12 PEG PEG . U 5 PEG A 1 520 13 PEG PEG . V 6 HOH A 1 601 1 HOH HOH . V 6 HOH A 2 602 2 HOH HOH . V 6 HOH A 3 603 3 HOH HOH . V 6 HOH A 4 604 4 HOH HOH . V 6 HOH A 5 605 8 HOH HOH . V 6 HOH A 6 606 9 HOH HOH . V 6 HOH A 7 607 11 HOH HOH . V 6 HOH A 8 608 12 HOH HOH . V 6 HOH A 9 609 14 HOH HOH . V 6 HOH A 10 610 15 HOH HOH . V 6 HOH A 11 611 16 HOH HOH . V 6 HOH A 12 612 17 HOH HOH . V 6 HOH A 13 613 18 HOH HOH . V 6 HOH A 14 614 19 HOH HOH . V 6 HOH A 15 615 20 HOH HOH . V 6 HOH A 16 616 23 HOH HOH . V 6 HOH A 17 617 24 HOH HOH . V 6 HOH A 18 618 26 HOH HOH . V 6 HOH A 19 619 27 HOH HOH . V 6 HOH A 20 620 29 HOH HOH . V 6 HOH A 21 621 30 HOH HOH . V 6 HOH A 22 622 31 HOH HOH . V 6 HOH A 23 623 32 HOH HOH . V 6 HOH A 24 624 34 HOH HOH . V 6 HOH A 25 625 35 HOH HOH . V 6 HOH A 26 626 36 HOH HOH . V 6 HOH A 27 627 38 HOH HOH . V 6 HOH A 28 628 39 HOH HOH . V 6 HOH A 29 629 40 HOH HOH . V 6 HOH A 30 630 42 HOH HOH . V 6 HOH A 31 631 44 HOH HOH . V 6 HOH A 32 632 45 HOH HOH . V 6 HOH A 33 633 46 HOH HOH . V 6 HOH A 34 634 47 HOH HOH . V 6 HOH A 35 635 48 HOH HOH . V 6 HOH A 36 636 49 HOH HOH . V 6 HOH A 37 637 51 HOH HOH . V 6 HOH A 38 638 53 HOH HOH . V 6 HOH A 39 639 55 HOH HOH . V 6 HOH A 40 640 57 HOH HOH . V 6 HOH A 41 641 58 HOH HOH . V 6 HOH A 42 642 59 HOH HOH . V 6 HOH A 43 643 60 HOH HOH . V 6 HOH A 44 644 61 HOH HOH . V 6 HOH A 45 645 62 HOH HOH . V 6 HOH A 46 646 63 HOH HOH . V 6 HOH A 47 647 64 HOH HOH . V 6 HOH A 48 648 66 HOH HOH . V 6 HOH A 49 649 67 HOH HOH . V 6 HOH A 50 650 68 HOH HOH . V 6 HOH A 51 651 69 HOH HOH . V 6 HOH A 52 652 70 HOH HOH . V 6 HOH A 53 653 71 HOH HOH . V 6 HOH A 54 654 72 HOH HOH . V 6 HOH A 55 655 74 HOH HOH . V 6 HOH A 56 656 75 HOH HOH . V 6 HOH A 57 657 76 HOH HOH . V 6 HOH A 58 658 77 HOH HOH . V 6 HOH A 59 659 659 HOH HOH . V 6 HOH A 60 660 80 HOH HOH . V 6 HOH A 61 661 81 HOH HOH . V 6 HOH A 62 662 82 HOH HOH . V 6 HOH A 63 663 83 HOH HOH . V 6 HOH A 64 664 85 HOH HOH . V 6 HOH A 65 665 86 HOH HOH . V 6 HOH A 66 666 87 HOH HOH . V 6 HOH A 67 667 88 HOH HOH . V 6 HOH A 68 668 89 HOH HOH . V 6 HOH A 69 669 90 HOH HOH . V 6 HOH A 70 670 91 HOH HOH . V 6 HOH A 71 671 97 HOH HOH . V 6 HOH A 72 672 100 HOH HOH . V 6 HOH A 73 673 105 HOH HOH . V 6 HOH A 74 674 106 HOH HOH . V 6 HOH A 75 675 109 HOH HOH . V 6 HOH A 76 676 110 HOH HOH . V 6 HOH A 77 677 111 HOH HOH . V 6 HOH A 78 678 112 HOH HOH . V 6 HOH A 79 679 114 HOH HOH . V 6 HOH A 80 680 115 HOH HOH . V 6 HOH A 81 681 116 HOH HOH . V 6 HOH A 82 682 117 HOH HOH . V 6 HOH A 83 683 118 HOH HOH . V 6 HOH A 84 684 119 HOH HOH . V 6 HOH A 85 685 120 HOH HOH . V 6 HOH A 86 686 122 HOH HOH . V 6 HOH A 87 687 123 HOH HOH . V 6 HOH A 88 688 124 HOH HOH . V 6 HOH A 89 689 689 HOH HOH . V 6 HOH A 90 690 690 HOH HOH . V 6 HOH A 91 691 132 HOH HOH . V 6 HOH A 92 692 692 HOH HOH . V 6 HOH A 93 693 136 HOH HOH . V 6 HOH A 94 694 138 HOH HOH . V 6 HOH A 95 695 139 HOH HOH . V 6 HOH A 96 696 140 HOH HOH . V 6 HOH A 97 697 142 HOH HOH . V 6 HOH A 98 698 146 HOH HOH . V 6 HOH A 99 699 147 HOH HOH . V 6 HOH A 100 700 148 HOH HOH . V 6 HOH A 101 701 701 HOH HOH . V 6 HOH A 102 702 152 HOH HOH . V 6 HOH A 103 703 153 HOH HOH . V 6 HOH A 104 704 154 HOH HOH . V 6 HOH A 105 705 157 HOH HOH . V 6 HOH A 106 706 158 HOH HOH . V 6 HOH A 107 707 159 HOH HOH . V 6 HOH A 108 708 160 HOH HOH . V 6 HOH A 109 709 162 HOH HOH . V 6 HOH A 110 710 163 HOH HOH . V 6 HOH A 111 711 166 HOH HOH . V 6 HOH A 112 712 167 HOH HOH . V 6 HOH A 113 713 169 HOH HOH . V 6 HOH A 114 714 714 HOH HOH . V 6 HOH A 115 715 173 HOH HOH . V 6 HOH A 116 716 174 HOH HOH . V 6 HOH A 117 717 717 HOH HOH . V 6 HOH A 118 718 176 HOH HOH . V 6 HOH A 119 719 178 HOH HOH . V 6 HOH A 120 720 179 HOH HOH . V 6 HOH A 121 721 180 HOH HOH . V 6 HOH A 122 722 181 HOH HOH . V 6 HOH A 123 723 182 HOH HOH . V 6 HOH A 124 724 183 HOH HOH . V 6 HOH A 125 725 185 HOH HOH . V 6 HOH A 126 726 186 HOH HOH . V 6 HOH A 127 727 187 HOH HOH . V 6 HOH A 128 728 188 HOH HOH . V 6 HOH A 129 729 189 HOH HOH . V 6 HOH A 130 730 190 HOH HOH . V 6 HOH A 131 731 191 HOH HOH . V 6 HOH A 132 732 192 HOH HOH . V 6 HOH A 133 733 193 HOH HOH . V 6 HOH A 134 734 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 -29.29 64.993 37.895 1 69.79 ? C1 NAG 504 A 1 HETATM 2 C C2 NAG . . . E 2 -29.426 64.322 39.26 1 76.04 ? C2 NAG 504 A 1 HETATM 3 C C3 NAG . . . E 2 -29.121 65.282 40.408 1 84.31 ? C3 NAG 504 A 1 HETATM 4 C C4 NAG . . . E 2 -27.859 66.09 40.137 1 86.44 ? C4 NAG 504 A 1 HETATM 5 C C5 NAG . . . E 2 -27.927 66.722 38.753 1 82.43 ? C5 NAG 504 A 1 HETATM 6 C C6 NAG . . . E 2 -26.676 67.537 38.445 1 82.73 ? C6 NAG 504 A 1 HETATM 7 C C7 NAG . . . E 2 -31.029 62.5 39.232 1 67.23 ? C7 NAG 504 A 1 HETATM 8 C C8 NAG . . . E 2 -32.404 62.037 39.612 1 63.62 ? C8 NAG 504 A 1 HETATM 9 N N2 NAG . . . E 2 -30.77 63.794 39.399 1 71.19 ? N2 NAG 504 A 1 HETATM 10 O O3 NAG . . . E 2 -28.96 64.554 41.607 1 87.68 ? O3 NAG 504 A 1 HETATM 11 O O4 NAG . . . E 2 -27.721 67.095 41.117 1 88.87 ? O4 NAG 504 A 1 HETATM 12 O O5 NAG . . . E 2 -28.075 65.707 37.784 1 78.3 ? O5 NAG 504 A 1 HETATM 13 O O6 NAG . . . E 2 -25.552 66.686 38.418 1 92.75 ? O6 NAG 504 A 1 HETATM 14 O O7 NAG . . . E 2 -30.202 61.704 38.79 1 74.03 ? O7 NAG 504 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 1130 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #