data_4KL1
#
_model_server_result.job_id            -5gX9Y_tUg45iD1dJFKtFw 
_model_server_result.datetime_utc      '2025-01-27 14:46:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kl1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":801}' 
#
_entry.id    4KL1 
#
_exptl.entry_id    4KL1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.205 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLIC GUANOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KL1 
_cell.length_a            97.1 
_cell.length_b            99.03 
_cell.length_c            109.57 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KL1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 71 A ASN 585 1_555 A N CSO 72 A CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C CSO 72 A CSO 586 1_555 A N ARG 73 A ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale3 B C ASN 71 B ASN 585 1_555 B N CSO 72 B CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C CSO 72 B CSO 586 1_555 B N ARG 73 B ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale5 C C ASN 71 C ASN 585 1_555 C N CSO 72 C CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale6 C C CSO 72 C CSO 586 1_555 C N ARG 73 C ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 D C ASN 71 D ASN 585 1_555 D N CSO 72 D CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 D C CSO 72 D CSO 586 1_555 D N ARG 73 D ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C10 H12 N5 O7 P' 
_chem_comp.formula_weight    345.205 
_chem_comp.id                PCG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLIC GUANOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A PCG sing 270 n n 
PA O2A PCG doub 271 n n 
PA O5' PCG sing 272 n n 
PA O3' PCG sing 273 n n 
O1A HO1A PCG sing 274 n n 
O5' C5' PCG sing 275 n n 
C5' C4' PCG sing 276 n n 
C5' "H5'1" PCG sing 277 n n 
C5' "H5'2" PCG sing 278 n n 
C4' O4' PCG sing 279 n n 
C4' C3' PCG sing 280 n n 
C4' H4' PCG sing 281 n n 
O4' C1' PCG sing 282 n n 
C3' O3' PCG sing 283 n n 
C3' C2' PCG sing 284 n n 
C3' H3' PCG sing 285 n n 
C2' O2' PCG sing 286 n n 
C2' C1' PCG sing 287 n n 
C2' H2' PCG sing 288 n n 
O2' HO2' PCG sing 289 n n 
C1' N9 PCG sing 290 n n 
C1' H1' PCG sing 291 n n 
N9 C8 PCG sing 292 n y 
N9 C4 PCG sing 293 n y 
C8 N7 PCG doub 294 n y 
C8 H8 PCG sing 295 n n 
N7 C5 PCG sing 296 n y 
C5 C6 PCG sing 297 n n 
C5 C4 PCG doub 298 n y 
C6 O6 PCG doub 299 n n 
C6 N1 PCG sing 300 n n 
N1 C2 PCG sing 301 n n 
N1 HN1 PCG sing 302 n n 
C2 N2 PCG sing 303 n n 
C2 N3 PCG doub 304 n n 
N2 HN21 PCG sing 305 n n 
N2 HN22 PCG sing 306 n n 
N3 C4 PCG sing 307 n n 
#
_atom_sites.entry_id                     4KL1 
_atom_sites.fract_transf_matrix[1][1]    0.010299 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PCG A 1 801 801 PCG PCG . 
F 2 PCG A 1 802 802 PCG PCG . 
G 3 ACT A 1 803 4 ACT ACT . 
H 3 ACT A 1 804 5 ACT ACT . 
I 3 ACT A 1 805 6 ACT ACT . 
J 2 PCG B 1 801 801 PCG PCG . 
K 2 PCG B 1 802 802 PCG PCG . 
L 2 PCG C 1 801 801 PCG PCG . 
M 2 PCG C 1 802 802 PCG PCG . 
N 4 GOL C 1 803 1 GOL GOL . 
O 4 GOL C 1 804 2 GOL GOL . 
P 3 ACT C 1 805 3 ACT ACT . 
Q 2 PCG D 1 801 801 PCG PCG . 
R 2 PCG D 1 802 802 PCG PCG . 
S 5 HOH A 1 901 1 HOH HOH . 
S 5 HOH A 2 902 3 HOH HOH . 
S 5 HOH A 3 903 11 HOH HOH . 
S 5 HOH A 4 904 12 HOH HOH . 
S 5 HOH A 5 905 15 HOH HOH . 
S 5 HOH A 6 906 18 HOH HOH . 
S 5 HOH A 7 907 25 HOH HOH . 
S 5 HOH A 8 908 28 HOH HOH . 
S 5 HOH A 9 909 30 HOH HOH . 
S 5 HOH A 10 910 33 HOH HOH . 
S 5 HOH A 11 911 34 HOH HOH . 
S 5 HOH A 12 912 38 HOH HOH . 
S 5 HOH A 13 913 39 HOH HOH . 
S 5 HOH A 14 914 43 HOH HOH . 
S 5 HOH A 15 915 49 HOH HOH . 
S 5 HOH A 16 916 50 HOH HOH . 
S 5 HOH A 17 917 57 HOH HOH . 
S 5 HOH A 18 918 60 HOH HOH . 
S 5 HOH A 19 919 61 HOH HOH . 
S 5 HOH A 20 920 62 HOH HOH . 
S 5 HOH A 21 921 65 HOH HOH . 
S 5 HOH A 22 922 67 HOH HOH . 
S 5 HOH A 23 923 71 HOH HOH . 
S 5 HOH A 24 924 78 HOH HOH . 
S 5 HOH A 25 925 81 HOH HOH . 
S 5 HOH A 26 926 82 HOH HOH . 
S 5 HOH A 27 927 86 HOH HOH . 
S 5 HOH A 28 928 93 HOH HOH . 
S 5 HOH A 29 929 95 HOH HOH . 
S 5 HOH A 30 930 96 HOH HOH . 
S 5 HOH A 31 931 98 HOH HOH . 
S 5 HOH A 32 932 100 HOH HOH . 
S 5 HOH A 33 933 102 HOH HOH . 
S 5 HOH A 34 934 106 HOH HOH . 
S 5 HOH A 35 935 110 HOH HOH . 
S 5 HOH A 36 936 111 HOH HOH . 
S 5 HOH A 37 937 112 HOH HOH . 
S 5 HOH A 38 938 117 HOH HOH . 
S 5 HOH A 39 939 122 HOH HOH . 
S 5 HOH A 40 940 123 HOH HOH . 
T 5 HOH B 1 901 6 HOH HOH . 
T 5 HOH B 2 902 9 HOH HOH . 
T 5 HOH B 3 903 22 HOH HOH . 
T 5 HOH B 4 904 29 HOH HOH . 
T 5 HOH B 5 905 35 HOH HOH . 
T 5 HOH B 6 906 37 HOH HOH . 
T 5 HOH B 7 907 53 HOH HOH . 
T 5 HOH B 8 908 54 HOH HOH . 
T 5 HOH B 9 909 58 HOH HOH . 
T 5 HOH B 10 910 66 HOH HOH . 
T 5 HOH B 11 911 73 HOH HOH . 
T 5 HOH B 12 912 75 HOH HOH . 
T 5 HOH B 13 913 88 HOH HOH . 
T 5 HOH B 14 914 94 HOH HOH . 
T 5 HOH B 15 915 101 HOH HOH . 
T 5 HOH B 16 916 103 HOH HOH . 
T 5 HOH B 17 917 119 HOH HOH . 
U 5 HOH C 1 901 4 HOH HOH . 
U 5 HOH C 2 902 7 HOH HOH . 
U 5 HOH C 3 903 8 HOH HOH . 
U 5 HOH C 4 904 10 HOH HOH . 
U 5 HOH C 5 905 14 HOH HOH . 
U 5 HOH C 6 906 17 HOH HOH . 
U 5 HOH C 7 907 21 HOH HOH . 
U 5 HOH C 8 908 23 HOH HOH . 
U 5 HOH C 9 909 26 HOH HOH . 
U 5 HOH C 10 910 27 HOH HOH . 
U 5 HOH C 11 911 32 HOH HOH . 
U 5 HOH C 12 912 36 HOH HOH . 
U 5 HOH C 13 913 40 HOH HOH . 
U 5 HOH C 14 914 42 HOH HOH . 
U 5 HOH C 15 915 45 HOH HOH . 
U 5 HOH C 16 916 47 HOH HOH . 
U 5 HOH C 17 917 48 HOH HOH . 
U 5 HOH C 18 918 52 HOH HOH . 
U 5 HOH C 19 919 56 HOH HOH . 
U 5 HOH C 20 920 63 HOH HOH . 
U 5 HOH C 21 921 64 HOH HOH . 
U 5 HOH C 22 922 68 HOH HOH . 
U 5 HOH C 23 923 69 HOH HOH . 
U 5 HOH C 24 924 76 HOH HOH . 
U 5 HOH C 25 925 77 HOH HOH . 
U 5 HOH C 26 926 79 HOH HOH . 
U 5 HOH C 27 927 84 HOH HOH . 
U 5 HOH C 28 928 87 HOH HOH . 
U 5 HOH C 29 929 91 HOH HOH . 
U 5 HOH C 30 930 92 HOH HOH . 
U 5 HOH C 31 931 99 HOH HOH . 
U 5 HOH C 32 932 104 HOH HOH . 
U 5 HOH C 33 933 105 HOH HOH . 
U 5 HOH C 34 934 107 HOH HOH . 
U 5 HOH C 35 935 108 HOH HOH . 
U 5 HOH C 36 936 109 HOH HOH . 
U 5 HOH C 37 937 113 HOH HOH . 
U 5 HOH C 38 938 114 HOH HOH . 
U 5 HOH C 39 939 115 HOH HOH . 
U 5 HOH C 40 940 116 HOH HOH . 
U 5 HOH C 41 941 120 HOH HOH . 
U 5 HOH C 42 942 121 HOH HOH . 
U 5 HOH C 43 943 124 HOH HOH . 
V 5 HOH D 1 901 2 HOH HOH . 
V 5 HOH D 2 902 13 HOH HOH . 
V 5 HOH D 3 903 16 HOH HOH . 
V 5 HOH D 4 904 19 HOH HOH . 
V 5 HOH D 5 905 20 HOH HOH . 
V 5 HOH D 6 906 24 HOH HOH . 
V 5 HOH D 7 907 31 HOH HOH . 
V 5 HOH D 8 908 41 HOH HOH . 
V 5 HOH D 9 909 46 HOH HOH . 
V 5 HOH D 10 910 51 HOH HOH . 
V 5 HOH D 11 911 55 HOH HOH . 
V 5 HOH D 12 912 59 HOH HOH . 
V 5 HOH D 13 913 72 HOH HOH . 
V 5 HOH D 14 914 80 HOH HOH . 
V 5 HOH D 15 915 85 HOH HOH . 
V 5 HOH D 16 916 89 HOH HOH . 
V 5 HOH D 17 917 97 HOH HOH . 
V 5 HOH D 18 918 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA PCG . . . L 2 5.893 -36.393 -15.93 1 26.01 ? PA PCG 801 C 1 
HETATM 2 O O1A PCG . . . L 2 4.653 -35.686 -15.418 1 25.8 ? O1A PCG 801 C 1 
HETATM 3 O O2A PCG . . . L 2 6.385 -36.107 -17.331 1 26.28 ? O2A PCG 801 C 1 
HETATM 4 O O5' PCG . . . L 2 7.135 -36.025 -14.965 1 22.5 ? O5' PCG 801 C 1 
HETATM 5 C C5' PCG . . . L 2 7.334 -36.625 -13.704 1 22.04 ? C5' PCG 801 C 1 
HETATM 6 C C4' PCG . . . L 2 7.132 -38.126 -13.895 1 22.98 ? C4' PCG 801 C 1 
HETATM 7 O O4' PCG . . . L 2 7.177 -38.89 -12.7 1 23.24 ? O4' PCG 801 C 1 
HETATM 8 C C3' PCG . . . L 2 5.755 -38.445 -14.4 1 21.71 ? C3' PCG 801 C 1 
HETATM 9 O O3' PCG . . . L 2 5.712 -37.984 -15.723 1 23.85 ? O3' PCG 801 C 1 
HETATM 10 C C2' PCG . . . L 2 5.74 -39.931 -14.243 1 23.75 ? C2' PCG 801 C 1 
HETATM 11 O O2' PCG . . . L 2 6.304 -40.592 -15.384 1 23.02 ? O2' PCG 801 C 1 
HETATM 12 C C1' PCG . . . L 2 6.653 -40.146 -13.028 1 25.35 ? C1' PCG 801 C 1 
HETATM 13 N N9 PCG . . . L 2 5.883 -40.682 -11.881 1 28.29 ? N9 PCG 801 C 1 
HETATM 14 C C8 PCG . . . L 2 6.142 -41.822 -11.185 1 29.12 ? C8 PCG 801 C 1 
HETATM 15 N N7 PCG . . . L 2 5.211 -42.034 -10.199 1 27.83 ? N7 PCG 801 C 1 
HETATM 16 C C5 PCG . . . L 2 4.345 -41.013 -10.284 1 25.98 ? C5 PCG 801 C 1 
HETATM 17 C C6 PCG . . . L 2 3.144 -40.626 -9.562 1 27.07 ? C6 PCG 801 C 1 
HETATM 18 O O6 PCG . . . L 2 2.728 -41.33 -8.618 1 30.26 ? O6 PCG 801 C 1 
HETATM 19 N N1 PCG . . . L 2 2.539 -39.497 -9.944 1 28.12 ? N1 PCG 801 C 1 
HETATM 20 C C2 PCG . . . L 2 2.998 -38.74 -10.957 1 27.95 ? C2 PCG 801 C 1 
HETATM 21 N N2 PCG . . . L 2 2.326 -37.618 -11.301 1 27.75 ? N2 PCG 801 C 1 
HETATM 22 N N3 PCG . . . L 2 4.122 -39.032 -11.658 1 26.72 ? N3 PCG 801 C 1 
HETATM 23 C C4 PCG . . . L 2 4.798 -40.133 -11.368 1 26.44 ? C4 PCG 801 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#