data_4KL4 # _model_server_result.job_id E9Rx9IsIBa9NfGODJAjHNw _model_server_result.datetime_utc '2024-10-21 01:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4KL4 # _exptl.entry_id 4KL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KL4 _cell.length_a 130.411 _cell.length_b 130.411 _cell.length_c 38.627 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.44 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4KL4 _atom_sites.fract_transf_matrix[1][1] 0.007668 _atom_sites.fract_transf_matrix[1][2] 0.004427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 801 NAG NAG . C 3 PEG A 1 802 1 PEG PEG . D 4 GOL A 1 803 1 GOL GOL . E 5 HOH A 1 901 1 HOH HOH . E 5 HOH A 2 902 5 HOH HOH . E 5 HOH A 3 903 7 HOH HOH . E 5 HOH A 4 904 9 HOH HOH . E 5 HOH A 5 905 11 HOH HOH . E 5 HOH A 6 906 12 HOH HOH . E 5 HOH A 7 907 14 HOH HOH . E 5 HOH A 8 908 15 HOH HOH . E 5 HOH A 9 909 16 HOH HOH . E 5 HOH A 10 910 17 HOH HOH . E 5 HOH A 11 911 18 HOH HOH . E 5 HOH A 12 912 19 HOH HOH . E 5 HOH A 13 913 21 HOH HOH . E 5 HOH A 14 914 22 HOH HOH . E 5 HOH A 15 915 23 HOH HOH . E 5 HOH A 16 916 24 HOH HOH . E 5 HOH A 17 917 25 HOH HOH . E 5 HOH A 18 918 26 HOH HOH . E 5 HOH A 19 919 27 HOH HOH . E 5 HOH A 20 920 28 HOH HOH . E 5 HOH A 21 921 30 HOH HOH . E 5 HOH A 22 922 31 HOH HOH . E 5 HOH A 23 923 32 HOH HOH . E 5 HOH A 24 924 33 HOH HOH . E 5 HOH A 25 925 34 HOH HOH . E 5 HOH A 26 926 35 HOH HOH . E 5 HOH A 27 927 36 HOH HOH . E 5 HOH A 28 928 39 HOH HOH . E 5 HOH A 29 929 40 HOH HOH . E 5 HOH A 30 930 42 HOH HOH . E 5 HOH A 31 931 43 HOH HOH . E 5 HOH A 32 932 44 HOH HOH . E 5 HOH A 33 933 45 HOH HOH . E 5 HOH A 34 934 46 HOH HOH . E 5 HOH A 35 935 49 HOH HOH . E 5 HOH A 36 936 51 HOH HOH . E 5 HOH A 37 937 52 HOH HOH . E 5 HOH A 38 938 53 HOH HOH . E 5 HOH A 39 939 54 HOH HOH . E 5 HOH A 40 940 55 HOH HOH . E 5 HOH A 41 941 56 HOH HOH . E 5 HOH A 42 942 58 HOH HOH . E 5 HOH A 43 943 62 HOH HOH . E 5 HOH A 44 944 63 HOH HOH . E 5 HOH A 45 945 64 HOH HOH . E 5 HOH A 46 946 65 HOH HOH . E 5 HOH A 47 947 66 HOH HOH . E 5 HOH A 48 948 67 HOH HOH . E 5 HOH A 49 949 70 HOH HOH . E 5 HOH A 50 950 71 HOH HOH . E 5 HOH A 51 951 73 HOH HOH . E 5 HOH A 52 952 74 HOH HOH . E 5 HOH A 53 953 76 HOH HOH . E 5 HOH A 54 954 78 HOH HOH . E 5 HOH A 55 955 79 HOH HOH . E 5 HOH A 56 956 80 HOH HOH . E 5 HOH A 57 957 84 HOH HOH . E 5 HOH A 58 958 85 HOH HOH . E 5 HOH A 59 959 88 HOH HOH . E 5 HOH A 60 960 89 HOH HOH . E 5 HOH A 61 961 90 HOH HOH . E 5 HOH A 62 962 92 HOH HOH . E 5 HOH A 63 963 96 HOH HOH . E 5 HOH A 64 964 97 HOH HOH . E 5 HOH A 65 965 98 HOH HOH . E 5 HOH A 66 966 100 HOH HOH . E 5 HOH A 67 967 101 HOH HOH . E 5 HOH A 68 968 102 HOH HOH . E 5 HOH A 69 969 104 HOH HOH . E 5 HOH A 70 970 106 HOH HOH . E 5 HOH A 71 971 108 HOH HOH . E 5 HOH A 72 972 109 HOH HOH . E 5 HOH A 73 973 110 HOH HOH . E 5 HOH A 74 974 111 HOH HOH . E 5 HOH A 75 975 113 HOH HOH . E 5 HOH A 76 976 115 HOH HOH . E 5 HOH A 77 977 116 HOH HOH . E 5 HOH A 78 978 117 HOH HOH . E 5 HOH A 79 979 118 HOH HOH . E 5 HOH A 80 980 119 HOH HOH . E 5 HOH A 81 981 120 HOH HOH . E 5 HOH A 82 982 121 HOH HOH . E 5 HOH A 83 983 122 HOH HOH . E 5 HOH A 84 984 123 HOH HOH . E 5 HOH A 85 985 124 HOH HOH . E 5 HOH A 86 986 126 HOH HOH . E 5 HOH A 87 987 127 HOH HOH . E 5 HOH A 88 988 130 HOH HOH . E 5 HOH A 89 989 131 HOH HOH . E 5 HOH A 90 990 132 HOH HOH . E 5 HOH A 91 991 133 HOH HOH . E 5 HOH A 92 992 134 HOH HOH . E 5 HOH A 93 993 135 HOH HOH . E 5 HOH A 94 994 136 HOH HOH . E 5 HOH A 95 995 137 HOH HOH . E 5 HOH A 96 996 138 HOH HOH . E 5 HOH A 97 997 141 HOH HOH . E 5 HOH A 98 998 143 HOH HOH . E 5 HOH A 99 999 144 HOH HOH . E 5 HOH A 100 1000 145 HOH HOH . E 5 HOH A 101 1001 147 HOH HOH . E 5 HOH A 102 1002 3 HOH HOH . E 5 HOH A 103 1003 8 HOH HOH . E 5 HOH A 104 1004 10 HOH HOH . E 5 HOH A 105 1005 12 HOH HOH . E 5 HOH A 106 1006 17 HOH HOH . E 5 HOH A 107 1007 18 HOH HOH . E 5 HOH A 108 1008 19 HOH HOH . E 5 HOH A 109 1009 2 HOH HOH . E 5 HOH A 110 1010 4 HOH HOH . E 5 HOH A 111 1011 5 HOH HOH . E 5 HOH A 112 1012 2 HOH HOH . E 5 HOH A 113 1013 2 HOH HOH . E 5 HOH A 114 1014 1 HOH HOH . E 5 HOH A 115 1015 2 HOH HOH . E 5 HOH A 116 1016 3 HOH HOH . E 5 HOH A 117 1017 4 HOH HOH . E 5 HOH A 118 1018 1 HOH HOH . E 5 HOH A 119 1019 2 HOH HOH . E 5 HOH A 120 1020 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -41.325 -12.422 17.75 1 56.69 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . B 2 -41.91 -12.152 19.16 1 63.85 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . B 2 -42.558 -10.766 19.316 1 64.36 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . B 2 -41.599 -9.746 18.735 1 64.94 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . B 2 -41.492 -10.067 17.224 1 64.22 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . B 2 -40.75 -9.034 16.373 1 66.18 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . B 2 -42.689 -14.404 19.885 1 65.25 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . B 2 -43.924 -15.266 19.902 1 66.73 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . B 2 -42.894 -13.198 19.338 1 65.6 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . B 2 -42.908 -10.436 20.648 1 66.37 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . B 2 -42.047 -8.434 19.05 1 68.07 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . B 2 -40.817 -11.298 17.032 1 59.69 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . B 2 -39.381 -9.021 16.738 1 65.42 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . B 2 -41.61 -14.799 20.34 1 63.66 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #