data_4KM6
#
_model_server_result.job_id            5g8m8C7nKVgjrm_hhfc4Pw 
_model_server_result.datetime_utc      '2024-11-23 08:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4km6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4KM6 
#
_exptl.entry_id    4KM6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KM6 
_cell.length_a            36.519 
_cell.length_b            63.339 
_cell.length_c            71.169 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KM6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 37 1_555 A SG CYS 39 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 31 A CYS 57 1_555 A SG CYS 79 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 40 A CYS 66 1_555 A SG CYS 83 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 63 A CYS 89 1_555 A SG CYS 149 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf5 A SG CYS 70 A CYS 96 1_555 A SG CYS 120 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 109 A CYS 135 1_555 A SG CYS 183 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf7 A SG CYS 113 A CYS 139 1_555 A SG CYS 163 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf8 A SG CYS 126 A CYS 152 1_555 A SG CYS 143 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
covale ? covale1 A ND2 ASN 43 A ASN 69 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale2 A ND2 ASN 135 A ASN 161 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 A ND2 ASN 175 A ASN 201 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
metalc ? metalc1 A OG SER 84 A SER 110 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4KM6 
_atom_sites.fract_transf_matrix[1][1]    0.027383 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 301 CA CA . 
C 3 NAG A 1 302 302 NAG NAG . 
D 3 NAG A 1 303 303 NAG NAG . 
E 3 NAG A 1 304 304 NAG NAG . 
F 4 HOH A 1 401 401 HOH HOH . 
F 4 HOH A 2 402 402 HOH HOH . 
F 4 HOH A 3 403 403 HOH HOH . 
F 4 HOH A 4 404 404 HOH HOH . 
F 4 HOH A 5 405 405 HOH HOH . 
F 4 HOH A 6 406 406 HOH HOH . 
F 4 HOH A 7 407 407 HOH HOH . 
F 4 HOH A 8 408 408 HOH HOH . 
F 4 HOH A 9 409 409 HOH HOH . 
F 4 HOH A 10 410 410 HOH HOH . 
F 4 HOH A 11 411 411 HOH HOH . 
F 4 HOH A 12 412 412 HOH HOH . 
F 4 HOH A 13 413 413 HOH HOH . 
F 4 HOH A 14 414 414 HOH HOH . 
F 4 HOH A 15 415 415 HOH HOH . 
F 4 HOH A 16 416 416 HOH HOH . 
F 4 HOH A 17 417 417 HOH HOH . 
F 4 HOH A 18 418 418 HOH HOH . 
F 4 HOH A 19 419 419 HOH HOH . 
F 4 HOH A 20 420 420 HOH HOH . 
F 4 HOH A 21 421 421 HOH HOH . 
F 4 HOH A 22 422 422 HOH HOH . 
F 4 HOH A 23 423 423 HOH HOH . 
F 4 HOH A 24 424 424 HOH HOH . 
F 4 HOH A 25 425 425 HOH HOH . 
F 4 HOH A 26 426 426 HOH HOH . 
F 4 HOH A 27 427 427 HOH HOH . 
F 4 HOH A 28 428 428 HOH HOH . 
F 4 HOH A 29 429 429 HOH HOH . 
F 4 HOH A 30 430 430 HOH HOH . 
F 4 HOH A 31 431 431 HOH HOH . 
F 4 HOH A 32 432 432 HOH HOH . 
F 4 HOH A 33 433 433 HOH HOH . 
F 4 HOH A 34 434 434 HOH HOH . 
F 4 HOH A 35 435 435 HOH HOH . 
F 4 HOH A 36 436 436 HOH HOH . 
F 4 HOH A 37 437 437 HOH HOH . 
F 4 HOH A 38 438 438 HOH HOH . 
F 4 HOH A 39 439 439 HOH HOH . 
F 4 HOH A 40 440 440 HOH HOH . 
F 4 HOH A 41 441 441 HOH HOH . 
F 4 HOH A 42 442 442 HOH HOH . 
F 4 HOH A 43 443 443 HOH HOH . 
F 4 HOH A 44 444 444 HOH HOH . 
F 4 HOH A 45 445 445 HOH HOH . 
F 4 HOH A 46 446 446 HOH HOH . 
F 4 HOH A 47 447 447 HOH HOH . 
F 4 HOH A 48 448 448 HOH HOH . 
F 4 HOH A 49 449 449 HOH HOH . 
F 4 HOH A 50 450 450 HOH HOH . 
F 4 HOH A 51 451 451 HOH HOH . 
F 4 HOH A 52 452 452 HOH HOH . 
F 4 HOH A 53 453 453 HOH HOH . 
F 4 HOH A 54 454 454 HOH HOH . 
F 4 HOH A 55 455 455 HOH HOH . 
F 4 HOH A 56 456 456 HOH HOH . 
F 4 HOH A 57 457 457 HOH HOH . 
F 4 HOH A 58 458 458 HOH HOH . 
F 4 HOH A 59 459 459 HOH HOH . 
F 4 HOH A 60 460 460 HOH HOH . 
F 4 HOH A 61 461 461 HOH HOH . 
F 4 HOH A 62 462 462 HOH HOH . 
F 4 HOH A 63 463 463 HOH HOH . 
F 4 HOH A 64 464 464 HOH HOH . 
F 4 HOH A 65 465 465 HOH HOH . 
F 4 HOH A 66 466 466 HOH HOH . 
F 4 HOH A 67 467 467 HOH HOH . 
F 4 HOH A 68 468 468 HOH HOH . 
F 4 HOH A 69 469 469 HOH HOH . 
F 4 HOH A 70 470 470 HOH HOH . 
F 4 HOH A 71 471 471 HOH HOH . 
F 4 HOH A 72 472 472 HOH HOH . 
F 4 HOH A 73 473 473 HOH HOH . 
F 4 HOH A 74 474 474 HOH HOH . 
F 4 HOH A 75 475 475 HOH HOH . 
F 4 HOH A 76 476 476 HOH HOH . 
F 4 HOH A 77 477 477 HOH HOH . 
F 4 HOH A 78 478 478 HOH HOH . 
F 4 HOH A 79 479 479 HOH HOH . 
F 4 HOH A 80 480 480 HOH HOH . 
F 4 HOH A 81 481 481 HOH HOH . 
F 4 HOH A 82 482 482 HOH HOH . 
F 4 HOH A 83 483 483 HOH HOH . 
F 4 HOH A 84 484 484 HOH HOH . 
F 4 HOH A 85 485 485 HOH HOH . 
F 4 HOH A 86 486 486 HOH HOH . 
F 4 HOH A 87 487 487 HOH HOH . 
F 4 HOH A 88 488 488 HOH HOH . 
F 4 HOH A 89 489 489 HOH HOH . 
F 4 HOH A 90 490 490 HOH HOH . 
F 4 HOH A 91 491 491 HOH HOH . 
F 4 HOH A 92 492 492 HOH HOH . 
F 4 HOH A 93 493 493 HOH HOH . 
F 4 HOH A 94 494 494 HOH HOH . 
F 4 HOH A 95 495 495 HOH HOH . 
F 4 HOH A 96 496 496 HOH HOH . 
F 4 HOH A 97 497 497 HOH HOH . 
F 4 HOH A 98 498 498 HOH HOH . 
F 4 HOH A 99 499 499 HOH HOH . 
F 4 HOH A 100 500 500 HOH HOH . 
F 4 HOH A 101 501 501 HOH HOH . 
F 4 HOH A 102 502 502 HOH HOH . 
F 4 HOH A 103 503 503 HOH HOH . 
F 4 HOH A 104 504 504 HOH HOH . 
F 4 HOH A 105 505 505 HOH HOH . 
F 4 HOH A 106 506 506 HOH HOH . 
F 4 HOH A 107 507 507 HOH HOH . 
F 4 HOH A 108 508 508 HOH HOH . 
F 4 HOH A 109 509 509 HOH HOH . 
F 4 HOH A 110 510 510 HOH HOH . 
F 4 HOH A 111 511 511 HOH HOH . 
F 4 HOH A 112 512 512 HOH HOH . 
F 4 HOH A 113 513 513 HOH HOH . 
F 4 HOH A 114 514 514 HOH HOH . 
F 4 HOH A 115 515 515 HOH HOH . 
F 4 HOH A 116 516 516 HOH HOH . 
F 4 HOH A 117 517 517 HOH HOH . 
F 4 HOH A 118 518 518 HOH HOH . 
F 4 HOH A 119 519 519 HOH HOH . 
F 4 HOH A 120 520 520 HOH HOH . 
F 4 HOH A 121 521 521 HOH HOH . 
F 4 HOH A 122 522 522 HOH HOH . 
F 4 HOH A 123 523 523 HOH HOH . 
F 4 HOH A 124 524 524 HOH HOH . 
F 4 HOH A 125 525 525 HOH HOH . 
F 4 HOH A 126 526 526 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 14.289 37.092 29.395 0.84 49.21 ? C1 NAG 304 A 1 
HETATM 2 C C2 NAG . . . E 3 14.62 35.603 29.457 0.84 55.37 ? C2 NAG 304 A 1 
HETATM 3 C C3 NAG . . . E 3 14.154 34.976 30.769 0.84 56.95 ? C3 NAG 304 A 1 
HETATM 4 C C4 NAG . . . E 3 14.49 35.852 31.969 0.84 58.19 ? C4 NAG 304 A 1 
HETATM 5 C C5 NAG . . . E 3 14.069 37.297 31.721 0.84 55.61 ? C5 NAG 304 A 1 
HETATM 6 C C6 NAG . . . E 3 14.448 38.2 32.888 0.84 55.89 ? C6 NAG 304 A 1 
HETATM 7 C C7 NAG . . . E 3 14.648 33.981 27.643 0.84 62.66 ? C7 NAG 304 A 1 
HETATM 8 C C8 NAG . . . E 3 14.514 34.03 26.15 0.84 63.05 ? C8 NAG 304 A 1 
HETATM 9 N N2 NAG . . . E 3 14.01 34.925 28.328 0.84 58.92 ? N2 NAG 304 A 1 
HETATM 10 O O3 NAG . . . E 3 14.773 33.721 30.937 0.84 56.48 ? O3 NAG 304 A 1 
HETATM 11 O O4 NAG . . . E 3 13.832 35.347 33.109 0.84 61.01 ? O4 NAG 304 A 1 
HETATM 12 O O5 NAG . . . E 3 14.71 37.766 30.56 0.84 52.7 ? O5 NAG 304 A 1 
HETATM 13 O O6 NAG . . . E 3 15.817 38.025 33.178 0.84 56.62 ? O6 NAG 304 A 1 
HETATM 14 O O7 NAG . . . E 3 15.311 33.096 28.18 0.84 64.53 ? O7 NAG 304 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           420 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#