data_4KMD # _model_server_result.job_id HBTX0T8hHSr4NO6TZuWpXw _model_server_result.datetime_utc '2024-11-04 22:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 4KMD # _exptl.entry_id 4KMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KMD _cell.length_a 70.83 _cell.length_b 82.118 _cell.length_c 149.756 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 4KMD _atom_sites.fract_transf_matrix[1][1] 0.014118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 1 GOL GOL . D 3 GOL A 1 502 2 GOL GOL . E 3 GOL A 1 503 3 GOL GOL . F 3 GOL A 1 504 4 GOL GOL . G 3 GOL A 1 505 5 GOL GOL . H 3 GOL A 1 506 7 GOL GOL . I 4 DTT A 1 507 507 DTT DTT . J 5 HOH A 1 601 1 HOH HOH . J 5 HOH A 2 602 2 HOH HOH . J 5 HOH A 3 603 3 HOH HOH . J 5 HOH A 4 604 4 HOH HOH . J 5 HOH A 5 605 5 HOH HOH . J 5 HOH A 6 606 6 HOH HOH . J 5 HOH A 7 607 7 HOH HOH . J 5 HOH A 8 608 8 HOH HOH . J 5 HOH A 9 609 9 HOH HOH . J 5 HOH A 10 610 10 HOH HOH . J 5 HOH A 11 611 11 HOH HOH . J 5 HOH A 12 612 12 HOH HOH . J 5 HOH A 13 613 13 HOH HOH . J 5 HOH A 14 614 14 HOH HOH . J 5 HOH A 15 615 15 HOH HOH . J 5 HOH A 16 616 16 HOH HOH . J 5 HOH A 17 617 17 HOH HOH . J 5 HOH A 18 618 18 HOH HOH . J 5 HOH A 19 619 19 HOH HOH . J 5 HOH A 20 620 20 HOH HOH . J 5 HOH A 21 621 21 HOH HOH . J 5 HOH A 22 622 22 HOH HOH . J 5 HOH A 23 623 23 HOH HOH . J 5 HOH A 24 624 24 HOH HOH . J 5 HOH A 25 625 25 HOH HOH . J 5 HOH A 26 626 26 HOH HOH . J 5 HOH A 27 627 27 HOH HOH . J 5 HOH A 28 628 28 HOH HOH . J 5 HOH A 29 629 29 HOH HOH . J 5 HOH A 30 630 30 HOH HOH . J 5 HOH A 31 631 31 HOH HOH . J 5 HOH A 32 632 32 HOH HOH . J 5 HOH A 33 633 33 HOH HOH . J 5 HOH A 34 634 34 HOH HOH . J 5 HOH A 35 635 35 HOH HOH . J 5 HOH A 36 636 36 HOH HOH . J 5 HOH A 37 637 37 HOH HOH . J 5 HOH A 38 638 38 HOH HOH . J 5 HOH A 39 639 40 HOH HOH . J 5 HOH A 40 640 41 HOH HOH . J 5 HOH A 41 641 42 HOH HOH . J 5 HOH A 42 642 43 HOH HOH . J 5 HOH A 43 643 44 HOH HOH . J 5 HOH A 44 644 45 HOH HOH . J 5 HOH A 45 645 46 HOH HOH . J 5 HOH A 46 646 47 HOH HOH . J 5 HOH A 47 647 48 HOH HOH . J 5 HOH A 48 648 49 HOH HOH . J 5 HOH A 49 649 50 HOH HOH . J 5 HOH A 50 650 51 HOH HOH . J 5 HOH A 51 651 52 HOH HOH . J 5 HOH A 52 652 53 HOH HOH . J 5 HOH A 53 653 54 HOH HOH . J 5 HOH A 54 654 55 HOH HOH . J 5 HOH A 55 655 56 HOH HOH . J 5 HOH A 56 656 57 HOH HOH . J 5 HOH A 57 657 58 HOH HOH . J 5 HOH A 58 658 59 HOH HOH . J 5 HOH A 59 659 60 HOH HOH . J 5 HOH A 60 660 61 HOH HOH . J 5 HOH A 61 661 62 HOH HOH . J 5 HOH A 62 662 63 HOH HOH . J 5 HOH A 63 663 64 HOH HOH . J 5 HOH A 64 664 65 HOH HOH . J 5 HOH A 65 665 66 HOH HOH . J 5 HOH A 66 666 67 HOH HOH . J 5 HOH A 67 667 68 HOH HOH . J 5 HOH A 68 668 69 HOH HOH . J 5 HOH A 69 669 70 HOH HOH . J 5 HOH A 70 670 71 HOH HOH . J 5 HOH A 71 671 72 HOH HOH . J 5 HOH A 72 672 73 HOH HOH . J 5 HOH A 73 673 74 HOH HOH . J 5 HOH A 74 674 75 HOH HOH . J 5 HOH A 75 675 76 HOH HOH . J 5 HOH A 76 676 77 HOH HOH . J 5 HOH A 77 677 78 HOH HOH . J 5 HOH A 78 678 79 HOH HOH . J 5 HOH A 79 679 80 HOH HOH . J 5 HOH A 80 680 81 HOH HOH . J 5 HOH A 81 681 82 HOH HOH . J 5 HOH A 82 682 83 HOH HOH . J 5 HOH A 83 683 84 HOH HOH . J 5 HOH A 84 684 85 HOH HOH . J 5 HOH A 85 685 86 HOH HOH . J 5 HOH A 86 686 87 HOH HOH . J 5 HOH A 87 687 88 HOH HOH . J 5 HOH A 88 688 89 HOH HOH . J 5 HOH A 89 689 90 HOH HOH . J 5 HOH A 90 690 91 HOH HOH . J 5 HOH A 91 691 92 HOH HOH . J 5 HOH A 92 692 93 HOH HOH . J 5 HOH A 93 693 94 HOH HOH . J 5 HOH A 94 694 95 HOH HOH . J 5 HOH A 95 695 96 HOH HOH . J 5 HOH A 96 696 97 HOH HOH . J 5 HOH A 97 697 98 HOH HOH . J 5 HOH A 98 698 100 HOH HOH . J 5 HOH A 99 699 101 HOH HOH . J 5 HOH A 100 700 102 HOH HOH . J 5 HOH A 101 701 104 HOH HOH . J 5 HOH A 102 702 105 HOH HOH . J 5 HOH A 103 703 106 HOH HOH . J 5 HOH A 104 704 107 HOH HOH . J 5 HOH A 105 705 108 HOH HOH . J 5 HOH A 106 706 109 HOH HOH . J 5 HOH A 107 707 110 HOH HOH . J 5 HOH A 108 708 111 HOH HOH . J 5 HOH A 109 709 112 HOH HOH . J 5 HOH A 110 710 113 HOH HOH . J 5 HOH A 111 711 114 HOH HOH . J 5 HOH A 112 712 115 HOH HOH . J 5 HOH A 113 713 116 HOH HOH . J 5 HOH A 114 714 117 HOH HOH . J 5 HOH A 115 715 118 HOH HOH . J 5 HOH A 116 716 119 HOH HOH . J 5 HOH A 117 717 120 HOH HOH . J 5 HOH A 118 718 121 HOH HOH . J 5 HOH A 119 719 122 HOH HOH . J 5 HOH A 120 720 123 HOH HOH . J 5 HOH A 121 721 124 HOH HOH . J 5 HOH A 122 722 125 HOH HOH . J 5 HOH A 123 723 126 HOH HOH . J 5 HOH A 124 724 127 HOH HOH . J 5 HOH A 125 725 128 HOH HOH . J 5 HOH A 126 726 129 HOH HOH . J 5 HOH A 127 727 130 HOH HOH . J 5 HOH A 128 728 131 HOH HOH . J 5 HOH A 129 729 132 HOH HOH . J 5 HOH A 130 730 133 HOH HOH . J 5 HOH A 131 731 134 HOH HOH . J 5 HOH A 132 732 135 HOH HOH . J 5 HOH A 133 733 136 HOH HOH . J 5 HOH A 134 734 137 HOH HOH . J 5 HOH A 135 735 138 HOH HOH . J 5 HOH A 136 736 139 HOH HOH . J 5 HOH A 137 737 140 HOH HOH . J 5 HOH A 138 738 141 HOH HOH . J 5 HOH A 139 739 142 HOH HOH . J 5 HOH A 140 740 143 HOH HOH . J 5 HOH A 141 741 144 HOH HOH . J 5 HOH A 142 742 146 HOH HOH . J 5 HOH A 143 743 147 HOH HOH . J 5 HOH A 144 744 148 HOH HOH . J 5 HOH A 145 745 149 HOH HOH . J 5 HOH A 146 746 150 HOH HOH . J 5 HOH A 147 747 151 HOH HOH . J 5 HOH A 148 748 152 HOH HOH . J 5 HOH A 149 749 153 HOH HOH . J 5 HOH A 150 750 154 HOH HOH . J 5 HOH A 151 751 155 HOH HOH . J 5 HOH A 152 752 156 HOH HOH . J 5 HOH A 153 753 157 HOH HOH . J 5 HOH A 154 754 158 HOH HOH . J 5 HOH A 155 755 159 HOH HOH . J 5 HOH A 156 756 160 HOH HOH . J 5 HOH A 157 757 161 HOH HOH . J 5 HOH A 158 758 162 HOH HOH . J 5 HOH A 159 759 163 HOH HOH . J 5 HOH A 160 760 164 HOH HOH . J 5 HOH A 161 761 165 HOH HOH . J 5 HOH A 162 762 166 HOH HOH . J 5 HOH A 163 763 167 HOH HOH . J 5 HOH A 164 764 169 HOH HOH . J 5 HOH A 165 765 170 HOH HOH . J 5 HOH A 166 766 171 HOH HOH . J 5 HOH A 167 767 172 HOH HOH . J 5 HOH A 168 768 173 HOH HOH . J 5 HOH A 169 769 174 HOH HOH . J 5 HOH A 170 770 175 HOH HOH . J 5 HOH A 171 771 176 HOH HOH . J 5 HOH A 172 772 177 HOH HOH . J 5 HOH A 173 773 178 HOH HOH . J 5 HOH A 174 774 179 HOH HOH . J 5 HOH A 175 775 180 HOH HOH . J 5 HOH A 176 776 181 HOH HOH . J 5 HOH A 177 777 182 HOH HOH . J 5 HOH A 178 778 183 HOH HOH . J 5 HOH A 179 779 184 HOH HOH . J 5 HOH A 180 780 185 HOH HOH . J 5 HOH A 181 781 186 HOH HOH . J 5 HOH A 182 782 187 HOH HOH . J 5 HOH A 183 783 188 HOH HOH . J 5 HOH A 184 784 189 HOH HOH . J 5 HOH A 185 785 190 HOH HOH . J 5 HOH A 186 786 191 HOH HOH . J 5 HOH A 187 787 192 HOH HOH . J 5 HOH A 188 788 193 HOH HOH . J 5 HOH A 189 789 194 HOH HOH . J 5 HOH A 190 790 195 HOH HOH . J 5 HOH A 191 791 196 HOH HOH . J 5 HOH A 192 792 197 HOH HOH . J 5 HOH A 193 793 198 HOH HOH . J 5 HOH A 194 794 199 HOH HOH . J 5 HOH A 195 795 200 HOH HOH . J 5 HOH A 196 796 201 HOH HOH . J 5 HOH A 197 797 202 HOH HOH . J 5 HOH A 198 798 203 HOH HOH . J 5 HOH A 199 799 204 HOH HOH . J 5 HOH A 200 800 205 HOH HOH . J 5 HOH A 201 801 207 HOH HOH . J 5 HOH A 202 802 208 HOH HOH . J 5 HOH A 203 803 209 HOH HOH . J 5 HOH A 204 804 210 HOH HOH . J 5 HOH A 205 805 211 HOH HOH . J 5 HOH A 206 806 212 HOH HOH . J 5 HOH A 207 807 213 HOH HOH . J 5 HOH A 208 808 214 HOH HOH . J 5 HOH A 209 809 215 HOH HOH . J 5 HOH A 210 810 216 HOH HOH . J 5 HOH A 211 811 217 HOH HOH . J 5 HOH A 212 812 218 HOH HOH . J 5 HOH A 213 813 219 HOH HOH . J 5 HOH A 214 814 220 HOH HOH . J 5 HOH A 215 815 221 HOH HOH . J 5 HOH A 216 816 222 HOH HOH . J 5 HOH A 217 817 223 HOH HOH . K 5 HOH B 1 201 39 HOH HOH . K 5 HOH B 2 202 99 HOH HOH . K 5 HOH B 3 203 103 HOH HOH . K 5 HOH B 4 204 145 HOH HOH . K 5 HOH B 5 205 168 HOH HOH . K 5 HOH B 6 206 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -29.554 -7.627 44.58 1 77.71 ? C1 GOL 506 A 1 HETATM 2 O O1 GOL . . . H 3 -29.303 -8.813 43.856 1 76.98 ? O1 GOL 506 A 1 HETATM 3 C C2 GOL . . . H 3 -28.261 -6.855 44.814 1 76.93 ? C2 GOL 506 A 1 HETATM 4 O O2 GOL . . . H 3 -28.535 -5.693 45.562 1 78.09 ? O2 GOL 506 A 1 HETATM 5 C C3 GOL . . . H 3 -27.636 -6.452 43.486 1 74.55 ? C3 GOL 506 A 1 HETATM 6 O O3 GOL . . . H 3 -26.442 -5.742 43.737 1 74.66 ? O3 GOL 506 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #