data_4KMF # _model_server_result.job_id ShN4fThbWynSiaHKXt5zOw _model_server_result.datetime_utc '2024-10-19 10:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4KMF # _exptl.entry_id 4KMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.22 _cell.angle_gamma 90 _cell.entry_id 4KMF _cell.length_a 55.367 _cell.length_b 49.471 _cell.length_c 29.585 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -3.718229 0 29.350417 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O HOH . A HOH 102 1_555 C MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B OP2 DC 2 B DC 63 1_555 C MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 B N7 DG 3 B DG 64 1_555 C MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 C MN MN . B MN 101 1_555 E O HOH . B HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 C MN MN . B MN 101 1_555 E O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 C MN MN . B MN 101 1_555 E O HOH . B HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? hydrog WATSON-CRICK hydrog1 B N3 DC 2 B DC 63 1_555 B N1 DG 7 B DG 68 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 2 B DC 63 1_555 B O6 DG 7 B DG 68 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 2 B DC 63 1_555 B N2 DG 7 B DG 68 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 3 B DG 64 1_555 B N3 DC 6 B DC 67 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 3 B DG 64 1_555 B O2 DC 6 B DC 67 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 3 B DG 64 1_555 B N4 DC 6 B DC 67 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 4 B DC 65 1_555 B N1 DG 5 B DG 66 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 4 B DC 65 1_555 B O6 DG 5 B DG 66 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 4 B DC 65 1_555 B N2 DG 5 B DG 66 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DG 5 B DG 66 1_555 B N3 DC 4 B DC 65 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 DG 5 B DG 66 1_555 B O2 DC 4 B DC 65 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 DG 5 B DG 66 1_555 B N4 DC 4 B DC 65 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 6 B DC 67 1_555 B N1 DG 3 B DG 64 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 6 B DC 67 1_555 B O6 DG 3 B DG 64 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 6 B DC 67 1_555 B N2 DG 3 B DG 64 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 7 B DG 68 1_555 B N3 DC 2 B DC 63 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 7 B DG 68 1_555 B O2 DC 2 B DC 63 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 7 B DG 68 1_555 B N4 DC 2 B DC 63 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KMF _atom_sites.fract_transf_matrix[1][1] 0.018061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002288 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.034071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN B 1 101 1 MN MN . D 4 HOH A 1 101 4 HOH HOH . D 4 HOH A 2 102 6 HOH HOH . D 4 HOH A 3 103 7 HOH HOH . D 4 HOH A 4 104 8 HOH HOH . D 4 HOH A 5 105 11 HOH HOH . D 4 HOH A 6 106 18 HOH HOH . D 4 HOH A 7 107 21 HOH HOH . D 4 HOH A 8 108 23 HOH HOH . D 4 HOH A 9 109 24 HOH HOH . D 4 HOH A 10 110 25 HOH HOH . D 4 HOH A 11 111 27 HOH HOH . D 4 HOH A 12 112 28 HOH HOH . D 4 HOH A 13 113 29 HOH HOH . D 4 HOH A 14 114 32 HOH HOH . D 4 HOH A 15 115 33 HOH HOH . D 4 HOH A 16 116 34 HOH HOH . D 4 HOH A 17 117 35 HOH HOH . D 4 HOH A 18 118 36 HOH HOH . D 4 HOH A 19 119 37 HOH HOH . D 4 HOH A 20 120 40 HOH HOH . D 4 HOH A 21 121 41 HOH HOH . D 4 HOH A 22 122 42 HOH HOH . D 4 HOH A 23 123 46 HOH HOH . D 4 HOH A 24 124 49 HOH HOH . D 4 HOH A 25 125 50 HOH HOH . D 4 HOH A 26 126 51 HOH HOH . D 4 HOH A 27 127 52 HOH HOH . D 4 HOH A 28 128 54 HOH HOH . D 4 HOH A 29 129 55 HOH HOH . D 4 HOH A 30 130 56 HOH HOH . D 4 HOH A 31 131 57 HOH HOH . D 4 HOH A 32 132 61 HOH HOH . D 4 HOH A 33 133 64 HOH HOH . D 4 HOH A 34 134 65 HOH HOH . D 4 HOH A 35 135 66 HOH HOH . D 4 HOH A 36 136 79 HOH HOH . D 4 HOH A 37 137 80 HOH HOH . D 4 HOH A 38 138 81 HOH HOH . D 4 HOH A 39 139 82 HOH HOH . D 4 HOH A 40 140 85 HOH HOH . D 4 HOH A 41 141 87 HOH HOH . D 4 HOH A 42 142 88 HOH HOH . D 4 HOH A 43 143 96 HOH HOH . E 4 HOH B 1 201 1 HOH HOH . E 4 HOH B 2 202 2 HOH HOH . E 4 HOH B 3 203 3 HOH HOH . E 4 HOH B 4 204 5 HOH HOH . E 4 HOH B 5 205 9 HOH HOH . E 4 HOH B 6 206 10 HOH HOH . E 4 HOH B 7 207 12 HOH HOH . E 4 HOH B 8 208 13 HOH HOH . E 4 HOH B 9 209 14 HOH HOH . E 4 HOH B 10 210 15 HOH HOH . E 4 HOH B 11 211 16 HOH HOH . E 4 HOH B 12 212 17 HOH HOH . E 4 HOH B 13 213 19 HOH HOH . E 4 HOH B 14 214 20 HOH HOH . E 4 HOH B 15 215 22 HOH HOH . E 4 HOH B 16 216 26 HOH HOH . E 4 HOH B 17 217 30 HOH HOH . E 4 HOH B 18 218 31 HOH HOH . E 4 HOH B 19 219 38 HOH HOH . E 4 HOH B 20 220 39 HOH HOH . E 4 HOH B 21 221 43 HOH HOH . E 4 HOH B 22 222 44 HOH HOH . E 4 HOH B 23 223 45 HOH HOH . E 4 HOH B 24 224 47 HOH HOH . E 4 HOH B 25 225 58 HOH HOH . E 4 HOH B 26 226 78 HOH HOH . E 4 HOH B 27 227 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.904 _atom_site.Cartn_y -10.424 _atom_site.Cartn_z 18.895 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #