data_4KMG
#
_model_server_result.job_id            fBN92M9kaJ6xlDldyxGnGw 
_model_server_result.datetime_utc      '2024-11-05 00:16:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":102}' 
#
_entry.id    4KMG 
#
_exptl.entry_id    4KMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.3 
_cell.angle_gamma         90 
_cell.entry_id            4KMG 
_cell.length_a            106.11 
_cell.length_b            28.98 
_cell.length_c            24.68 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -0.990453 0 24.660118 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 A SD MET 58 A MET 58 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc3 A O ASN 83 A ASN 83 1_555 C NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc4 A OG1 THR 86 A THR 86 1_555 C NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc5 A O THR 86 A THR 86 1_555 C NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4KMG 
_atom_sites.fract_transf_matrix[1][1]    0.009424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000379 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034507 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.040551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 101 89 HEC HEM . 
C 3 NA A 1 102 1 NA NA . 
D 4 HOH A 1 201 2 HOH HOH . 
D 4 HOH A 2 202 3 HOH HOH . 
D 4 HOH A 3 203 4 HOH HOH . 
D 4 HOH A 4 204 5 HOH HOH . 
D 4 HOH A 5 205 6 HOH HOH . 
D 4 HOH A 6 206 7 HOH HOH . 
D 4 HOH A 7 207 8 HOH HOH . 
D 4 HOH A 8 208 9 HOH HOH . 
D 4 HOH A 9 209 10 HOH HOH . 
D 4 HOH A 10 210 11 HOH HOH . 
D 4 HOH A 11 211 12 HOH HOH . 
D 4 HOH A 12 212 13 HOH HOH . 
D 4 HOH A 13 213 14 HOH HOH . 
D 4 HOH A 14 214 15 HOH HOH . 
D 4 HOH A 15 215 16 HOH HOH . 
D 4 HOH A 16 216 17 HOH HOH . 
D 4 HOH A 17 217 18 HOH HOH . 
D 4 HOH A 18 218 19 HOH HOH . 
D 4 HOH A 19 219 20 HOH HOH . 
D 4 HOH A 20 220 21 HOH HOH . 
D 4 HOH A 21 221 22 HOH HOH . 
D 4 HOH A 22 222 23 HOH HOH . 
D 4 HOH A 23 223 24 HOH HOH . 
D 4 HOH A 24 224 25 HOH HOH . 
D 4 HOH A 25 225 26 HOH HOH . 
D 4 HOH A 26 226 27 HOH HOH . 
D 4 HOH A 27 227 28 HOH HOH . 
D 4 HOH A 28 228 29 HOH HOH . 
D 4 HOH A 29 229 30 HOH HOH . 
D 4 HOH A 30 230 31 HOH HOH . 
D 4 HOH A 31 231 32 HOH HOH . 
D 4 HOH A 32 232 33 HOH HOH . 
D 4 HOH A 33 233 34 HOH HOH . 
D 4 HOH A 34 234 35 HOH HOH . 
D 4 HOH A 35 235 36 HOH HOH . 
D 4 HOH A 36 236 37 HOH HOH . 
D 4 HOH A 37 237 38 HOH HOH . 
D 4 HOH A 38 238 39 HOH HOH . 
D 4 HOH A 39 239 40 HOH HOH . 
D 4 HOH A 40 240 41 HOH HOH . 
D 4 HOH A 41 241 42 HOH HOH . 
D 4 HOH A 42 242 43 HOH HOH . 
D 4 HOH A 43 243 44 HOH HOH . 
D 4 HOH A 44 244 45 HOH HOH . 
D 4 HOH A 45 245 46 HOH HOH . 
D 4 HOH A 46 246 47 HOH HOH . 
D 4 HOH A 47 247 48 HOH HOH . 
D 4 HOH A 48 248 49 HOH HOH . 
D 4 HOH A 49 249 50 HOH HOH . 
D 4 HOH A 50 250 51 HOH HOH . 
D 4 HOH A 51 251 52 HOH HOH . 
D 4 HOH A 52 252 53 HOH HOH . 
D 4 HOH A 53 253 54 HOH HOH . 
D 4 HOH A 54 254 55 HOH HOH . 
D 4 HOH A 55 255 56 HOH HOH . 
D 4 HOH A 56 256 57 HOH HOH . 
D 4 HOH A 57 257 58 HOH HOH . 
D 4 HOH A 58 258 59 HOH HOH . 
D 4 HOH A 59 259 60 HOH HOH . 
D 4 HOH A 60 260 61 HOH HOH . 
D 4 HOH A 61 261 62 HOH HOH . 
D 4 HOH A 62 262 63 HOH HOH . 
D 4 HOH A 63 263 64 HOH HOH . 
D 4 HOH A 64 264 65 HOH HOH . 
D 4 HOH A 65 265 66 HOH HOH . 
D 4 HOH A 66 266 68 HOH HOH . 
D 4 HOH A 67 267 69 HOH HOH . 
D 4 HOH A 68 268 70 HOH HOH . 
D 4 HOH A 69 269 71 HOH HOH . 
D 4 HOH A 70 270 72 HOH HOH . 
D 4 HOH A 71 271 73 HOH HOH . 
D 4 HOH A 72 272 74 HOH HOH . 
D 4 HOH A 73 273 75 HOH HOH . 
D 4 HOH A 74 274 76 HOH HOH . 
D 4 HOH A 75 275 77 HOH HOH . 
D 4 HOH A 76 276 78 HOH HOH . 
D 4 HOH A 77 277 79 HOH HOH . 
D 4 HOH A 78 278 80 HOH HOH . 
D 4 HOH A 79 279 81 HOH HOH . 
D 4 HOH A 80 280 82 HOH HOH . 
D 4 HOH A 81 281 83 HOH HOH . 
D 4 HOH A 82 282 84 HOH HOH . 
D 4 HOH A 83 283 86 HOH HOH . 
D 4 HOH A 84 284 87 HOH HOH . 
D 4 HOH A 85 285 88 HOH HOH . 
D 4 HOH A 86 286 89 HOH HOH . 
D 4 HOH A 87 287 91 HOH HOH . 
D 4 HOH A 88 288 92 HOH HOH . 
D 4 HOH A 89 289 93 HOH HOH . 
D 4 HOH A 90 290 94 HOH HOH . 
D 4 HOH A 91 291 95 HOH HOH . 
D 4 HOH A 92 292 96 HOH HOH . 
D 4 HOH A 93 293 97 HOH HOH . 
D 4 HOH A 94 294 98 HOH HOH . 
D 4 HOH A 95 295 99 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -0.502 
_atom_site.Cartn_y               -3.167 
_atom_site.Cartn_z               12.328 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        12.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           1 
#