data_4KMP
#
_model_server_result.job_id            68tFONsVCWIyp77m82vU5A 
_model_server_result.datetime_utc      '2024-10-20 00:35:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kmp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4KMP 
#
_exptl.entry_id    4KMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         77.97 
_cell.angle_beta          70.54 
_cell.angle_gamma         61.28 
_cell.entry_id            4KMP 
_cell.length_a            32.016 
_cell.length_b            33.281 
_cell.length_c            48.002 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 50 A CYS 300 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 A SG CYS 53 A CYS 303 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc3 A NE2 HIS 70 A HIS 320 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc4 A SG CYS 77 A CYS 327 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 B SG CYS 50 B CYS 300 1_555 D ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc6 B SG CYS 53 B CYS 303 1_555 D ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc7 B NE2 HIS 70 B HIS 320 1_555 D ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc8 B SG CYS 77 B CYS 327 1_555 D ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4KMP 
_atom_sites.fract_transf_matrix[1][1]    0.031234 
_atom_sites.fract_transf_matrix[1][2]    -0.017111 
_atom_sites.fract_transf_matrix[1][3]    -0.010052 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034261 
_atom_sites.fract_transf_matrix[2][3]    -0.002005 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 502 ZN ZN . 
D 2 ZN B 1 401 502 ZN ZN . 
E 3 GT6 B 1 402 1 GT6 GT6 . 
F 4 HOH A 1 501 1 HOH HOH . 
F 4 HOH A 2 502 3 HOH HOH . 
F 4 HOH A 3 503 4 HOH HOH . 
F 4 HOH A 4 504 6 HOH HOH . 
F 4 HOH A 5 505 10 HOH HOH . 
F 4 HOH A 6 506 13 HOH HOH . 
F 4 HOH A 7 507 16 HOH HOH . 
F 4 HOH A 8 508 19 HOH HOH . 
F 4 HOH A 9 509 21 HOH HOH . 
F 4 HOH A 10 510 24 HOH HOH . 
F 4 HOH A 11 511 25 HOH HOH . 
F 4 HOH A 12 512 27 HOH HOH . 
F 4 HOH A 13 513 31 HOH HOH . 
F 4 HOH A 14 514 32 HOH HOH . 
F 4 HOH A 15 515 35 HOH HOH . 
F 4 HOH A 16 516 36 HOH HOH . 
F 4 HOH A 17 517 39 HOH HOH . 
F 4 HOH A 18 518 40 HOH HOH . 
F 4 HOH A 19 519 41 HOH HOH . 
F 4 HOH A 20 520 42 HOH HOH . 
F 4 HOH A 21 521 44 HOH HOH . 
F 4 HOH A 22 522 45 HOH HOH . 
F 4 HOH A 23 523 47 HOH HOH . 
F 4 HOH A 24 524 48 HOH HOH . 
F 4 HOH A 25 525 49 HOH HOH . 
F 4 HOH A 26 526 50 HOH HOH . 
F 4 HOH A 27 527 51 HOH HOH . 
F 4 HOH A 28 528 58 HOH HOH . 
F 4 HOH A 29 529 59 HOH HOH . 
F 4 HOH A 30 530 61 HOH HOH . 
F 4 HOH A 31 531 63 HOH HOH . 
F 4 HOH A 32 532 64 HOH HOH . 
F 4 HOH A 33 533 66 HOH HOH . 
F 4 HOH A 34 534 69 HOH HOH . 
F 4 HOH A 35 535 71 HOH HOH . 
F 4 HOH A 36 536 76 HOH HOH . 
F 4 HOH A 37 537 77 HOH HOH . 
F 4 HOH A 38 538 78 HOH HOH . 
F 4 HOH A 39 539 80 HOH HOH . 
F 4 HOH A 40 540 84 HOH HOH . 
F 4 HOH A 41 541 87 HOH HOH . 
F 4 HOH A 42 542 88 HOH HOH . 
F 4 HOH A 43 543 89 HOH HOH . 
F 4 HOH A 44 544 95 HOH HOH . 
F 4 HOH A 45 545 96 HOH HOH . 
F 4 HOH A 46 546 104 HOH HOH . 
F 4 HOH A 47 547 105 HOH HOH . 
F 4 HOH A 48 548 106 HOH HOH . 
F 4 HOH A 49 549 107 HOH HOH . 
F 4 HOH A 50 550 110 HOH HOH . 
F 4 HOH A 51 551 111 HOH HOH . 
F 4 HOH A 52 552 115 HOH HOH . 
F 4 HOH A 53 553 118 HOH HOH . 
F 4 HOH A 54 554 121 HOH HOH . 
F 4 HOH A 55 555 123 HOH HOH . 
F 4 HOH A 56 556 124 HOH HOH . 
F 4 HOH A 57 557 125 HOH HOH . 
F 4 HOH A 58 558 126 HOH HOH . 
F 4 HOH A 59 559 127 HOH HOH . 
F 4 HOH A 60 560 128 HOH HOH . 
F 4 HOH A 61 561 131 HOH HOH . 
F 4 HOH A 62 562 136 HOH HOH . 
F 4 HOH A 63 563 137 HOH HOH . 
G 4 HOH B 1 501 2 HOH HOH . 
G 4 HOH B 2 502 5 HOH HOH . 
G 4 HOH B 3 503 7 HOH HOH . 
G 4 HOH B 4 504 8 HOH HOH . 
G 4 HOH B 5 505 9 HOH HOH . 
G 4 HOH B 6 506 11 HOH HOH . 
G 4 HOH B 7 507 12 HOH HOH . 
G 4 HOH B 8 508 14 HOH HOH . 
G 4 HOH B 9 509 15 HOH HOH . 
G 4 HOH B 10 510 17 HOH HOH . 
G 4 HOH B 11 511 18 HOH HOH . 
G 4 HOH B 12 512 20 HOH HOH . 
G 4 HOH B 13 513 22 HOH HOH . 
G 4 HOH B 14 514 23 HOH HOH . 
G 4 HOH B 15 515 26 HOH HOH . 
G 4 HOH B 16 516 28 HOH HOH . 
G 4 HOH B 17 517 29 HOH HOH . 
G 4 HOH B 18 518 30 HOH HOH . 
G 4 HOH B 19 519 33 HOH HOH . 
G 4 HOH B 20 520 34 HOH HOH . 
G 4 HOH B 21 521 37 HOH HOH . 
G 4 HOH B 22 522 38 HOH HOH . 
G 4 HOH B 23 523 43 HOH HOH . 
G 4 HOH B 24 524 46 HOH HOH . 
G 4 HOH B 25 525 52 HOH HOH . 
G 4 HOH B 26 526 53 HOH HOH . 
G 4 HOH B 27 527 54 HOH HOH . 
G 4 HOH B 28 528 55 HOH HOH . 
G 4 HOH B 29 529 56 HOH HOH . 
G 4 HOH B 30 530 57 HOH HOH . 
G 4 HOH B 31 531 60 HOH HOH . 
G 4 HOH B 32 532 62 HOH HOH . 
G 4 HOH B 33 533 65 HOH HOH . 
G 4 HOH B 34 534 67 HOH HOH . 
G 4 HOH B 35 535 68 HOH HOH . 
G 4 HOH B 36 536 70 HOH HOH . 
G 4 HOH B 37 537 72 HOH HOH . 
G 4 HOH B 38 538 73 HOH HOH . 
G 4 HOH B 39 539 74 HOH HOH . 
G 4 HOH B 40 540 75 HOH HOH . 
G 4 HOH B 41 541 79 HOH HOH . 
G 4 HOH B 42 542 81 HOH HOH . 
G 4 HOH B 43 543 82 HOH HOH . 
G 4 HOH B 44 544 83 HOH HOH . 
G 4 HOH B 45 545 85 HOH HOH . 
G 4 HOH B 46 546 86 HOH HOH . 
G 4 HOH B 47 547 90 HOH HOH . 
G 4 HOH B 48 548 91 HOH HOH . 
G 4 HOH B 49 549 92 HOH HOH . 
G 4 HOH B 50 550 93 HOH HOH . 
G 4 HOH B 51 551 94 HOH HOH . 
G 4 HOH B 52 552 97 HOH HOH . 
G 4 HOH B 53 553 98 HOH HOH . 
G 4 HOH B 54 554 99 HOH HOH . 
G 4 HOH B 55 555 100 HOH HOH . 
G 4 HOH B 56 556 101 HOH HOH . 
G 4 HOH B 57 557 102 HOH HOH . 
G 4 HOH B 58 558 103 HOH HOH . 
G 4 HOH B 59 559 108 HOH HOH . 
G 4 HOH B 60 560 109 HOH HOH . 
G 4 HOH B 61 561 112 HOH HOH . 
G 4 HOH B 62 562 113 HOH HOH . 
G 4 HOH B 63 563 114 HOH HOH . 
G 4 HOH B 64 564 116 HOH HOH . 
G 4 HOH B 65 565 117 HOH HOH . 
G 4 HOH B 66 566 119 HOH HOH . 
G 4 HOH B 67 567 120 HOH HOH . 
G 4 HOH B 68 568 122 HOH HOH . 
G 4 HOH B 69 569 129 HOH HOH . 
G 4 HOH B 70 570 130 HOH HOH . 
G 4 HOH B 71 571 132 HOH HOH . 
G 4 HOH B 72 572 133 HOH HOH . 
G 4 HOH B 73 573 134 HOH HOH . 
G 4 HOH B 74 574 135 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               20.797 
_atom_site.Cartn_y               -4.368 
_atom_site.Cartn_z               15.057 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.54 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#