data_4KMZ # _model_server_result.job_id TRE9cBixIQhW-KbS4DMM5g _model_server_result.datetime_utc '2024-11-23 08:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4KMZ # _exptl.entry_id 4KMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KMZ _cell.length_a 96.861 _cell.length_b 96.861 _cell.length_c 98.337 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 301 NAG 2 n B NAG 2 B 2 NAG A 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 31 1_555 A SG CYS 38 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 30 A CYS 51 1_555 A SG CYS 78 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 39 A CYS 60 1_555 A SG CYS 82 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 62 A CYS 83 1_555 A SG CYS 148 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 69 A CYS 90 1_555 A SG CYS 119 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 108 A CYS 129 1_555 A SG CYS 182 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 112 A CYS 133 1_555 A SG CYS 162 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 125 A CYS 146 1_555 A SG CYS 142 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 174 A ASN 195 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? metalc ? metalc1 A OG SER 83 A SER 104 1_555 D K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.253 ? # _chem_comp.formula 'C19 H19 N7 O6' _chem_comp.formula_weight 441.397 _chem_comp.id FOL _chem_comp.mon_nstd_flag . _chem_comp.name 'FOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FOL sing 83 n y N1 C8A FOL sing 84 n y N1 HN1 FOL sing 85 n n C2 NA2 FOL sing 86 n n C2 N3 FOL doub 87 n y NA2 HN21 FOL sing 88 n n NA2 HN22 FOL sing 89 n n N3 C4 FOL sing 90 n y C4 O4 FOL doub 91 n n C4 C4A FOL sing 92 n y C4A N5 FOL sing 93 n y C4A C8A FOL doub 94 n y N5 C6 FOL doub 95 n y C6 C7 FOL sing 96 n y C6 C9 FOL sing 97 n n C7 N8 FOL doub 98 n y C7 H7 FOL sing 99 n n N8 C8A FOL sing 100 n y C9 N10 FOL sing 101 n n C9 H91 FOL sing 102 n n C9 H92 FOL sing 103 n n N10 C14 FOL sing 104 n n N10 HN0 FOL sing 105 n n C11 C12 FOL doub 106 n y C11 C16 FOL sing 107 n y C11 C FOL sing 108 n n C12 C13 FOL sing 109 n y C12 H12 FOL sing 110 n n C13 C14 FOL doub 111 n y C13 H13 FOL sing 112 n n C14 C15 FOL sing 113 n y C15 C16 FOL doub 114 n y C15 H15 FOL sing 115 n n C16 H16 FOL sing 116 n n C O FOL doub 117 n n C N FOL sing 118 n n N CA FOL sing 119 n n N HN FOL sing 120 n n CA CB FOL sing 121 n n CA CT FOL sing 122 n n CA HA FOL sing 123 n n CB CG FOL sing 124 n n CB HB1 FOL sing 125 n n CB HB2 FOL sing 126 n n CG CD FOL sing 127 n n CG HG1 FOL sing 128 n n CG HG2 FOL sing 129 n n CD OE1 FOL doub 130 n n CD OE2 FOL sing 131 n n OE2 HOE2 FOL sing 132 n n CT O1 FOL doub 133 n n CT O2 FOL sing 134 n n O2 HO2 FOL sing 135 n n # _atom_sites.entry_id 4KMZ _atom_sites.fract_transf_matrix[1][1] 0.010324 _atom_sites.fract_transf_matrix[1][2] 0.005961 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FOL A 1 301 241 FOL FOL . D 4 K A 1 302 251 K K . E 5 CL A 1 303 261 CL CL . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 2 HOH HOH . F 6 HOH A 3 403 3 HOH HOH . F 6 HOH A 4 404 4 HOH HOH . F 6 HOH A 5 405 5 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 9 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 11 HOH HOH . F 6 HOH A 12 412 12 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 15 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 21 HOH HOH . F 6 HOH A 22 422 22 HOH HOH . F 6 HOH A 23 423 23 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 26 HOH HOH . F 6 HOH A 27 427 27 HOH HOH . F 6 HOH A 28 428 28 HOH HOH . F 6 HOH A 29 429 29 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 32 HOH HOH . F 6 HOH A 33 433 33 HOH HOH . F 6 HOH A 34 434 34 HOH HOH . F 6 HOH A 35 435 35 HOH HOH . F 6 HOH A 36 436 36 HOH HOH . F 6 HOH A 37 437 37 HOH HOH . F 6 HOH A 38 438 38 HOH HOH . F 6 HOH A 39 439 39 HOH HOH . F 6 HOH A 40 440 40 HOH HOH . F 6 HOH A 41 441 41 HOH HOH . F 6 HOH A 42 442 42 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 44 HOH HOH . F 6 HOH A 45 445 45 HOH HOH . F 6 HOH A 46 446 46 HOH HOH . F 6 HOH A 47 447 47 HOH HOH . F 6 HOH A 48 448 48 HOH HOH . F 6 HOH A 49 449 49 HOH HOH . F 6 HOH A 50 450 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FOL . . . C 3 36.966 49.304 52.112 1 34.85 ? N1 FOL 301 A 1 HETATM 2 C C2 FOL . . . C 3 36.432 49.483 53.373 1 34.71 ? C2 FOL 301 A 1 HETATM 3 N NA2 FOL . . . C 3 37.134 50.132 54.305 1 35.14 ? NA2 FOL 301 A 1 HETATM 4 N N3 FOL . . . C 3 35.177 48.985 53.673 1 35.6 ? N3 FOL 301 A 1 HETATM 5 C C4 FOL . . . C 3 34.441 48.308 52.718 1 37.42 ? C4 FOL 301 A 1 HETATM 6 O O4 FOL . . . C 3 33.325 47.852 52.983 1 34.96 ? O4 FOL 301 A 1 HETATM 7 C C4A FOL . . . C 3 34.975 48.13 51.447 1 38.65 ? C4A FOL 301 A 1 HETATM 8 N N5 FOL . . . C 3 34.24 47.458 50.489 1 38.39 ? N5 FOL 301 A 1 HETATM 9 C C6 FOL . . . C 3 34.78 47.279 49.227 1 39.11 ? C6 FOL 301 A 1 HETATM 10 C C7 FOL . . . C 3 36.05 47.781 48.928 1 38.1 ? C7 FOL 301 A 1 HETATM 11 N N8 FOL . . . C 3 36.783 48.457 49.884 1 35.46 ? N8 FOL 301 A 1 HETATM 12 C C8A FOL . . . C 3 36.245 48.629 51.146 1 36.27 ? C8A FOL 301 A 1 HETATM 13 C C9 FOL . . . C 3 33.985 46.562 48.156 1 40.67 ? C9 FOL 301 A 1 HETATM 14 N N10 FOL . . . C 3 33.334 47.619 47.386 1 41.94 ? N10 FOL 301 A 1 HETATM 15 C C11 FOL . . . C 3 29.871 47.207 45.154 1 45.49 ? C11 FOL 301 A 1 HETATM 16 C C12 FOL . . . C 3 30.544 46.072 45.603 1 44.11 ? C12 FOL 301 A 1 HETATM 17 C C13 FOL . . . C 3 31.71 46.201 46.358 1 45.74 ? C13 FOL 301 A 1 HETATM 18 C C14 FOL . . . C 3 32.221 47.464 46.662 1 43.56 ? C14 FOL 301 A 1 HETATM 19 C C15 FOL . . . C 3 31.546 48.598 46.214 1 44.69 ? C15 FOL 301 A 1 HETATM 20 C C16 FOL . . . C 3 30.372 48.471 45.462 1 44.77 ? C16 FOL 301 A 1 HETATM 21 C C FOL . . . C 3 28.6 47.07 44.35 1 48.21 ? C FOL 301 A 1 HETATM 22 O O FOL . . . C 3 28.474 46.034 43.392 1 47.46 ? O FOL 301 A 1 HETATM 23 N N FOL . . . C 3 27.625 47.958 44.575 1 46.12 ? N FOL 301 A 1 HETATM 24 C CA FOL . . . C 3 26.291 47.861 44.027 1 48.48 ? CA FOL 301 A 1 HETATM 25 C CB FOL . . . C 3 25.315 47.221 45.023 1 46.98 ? CB FOL 301 A 1 HETATM 26 C CG FOL . . . C 3 25.809 45.883 45.571 1 47.66 ? CG FOL 301 A 1 HETATM 27 C CD FOL . . . C 3 24.767 45.191 46.428 1 48.59 ? CD FOL 301 A 1 HETATM 28 O OE1 FOL . . . C 3 23.876 44.475 45.893 1 45.14 ? OE1 FOL 301 A 1 HETATM 29 O OE2 FOL . . . C 3 24.79 45.302 47.683 1 49.76 ? OE2 FOL 301 A 1 HETATM 30 C CT FOL . . . C 3 25.809 49.242 43.661 1 51.43 ? CT FOL 301 A 1 HETATM 31 O O1 FOL . . . C 3 26.509 49.991 42.925 1 51.4 ? O1 FOL 301 A 1 HETATM 32 O O2 FOL . . . C 3 24.701 49.66 44.085 1 50.58 ? O2 FOL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #