data_4KN2 # _model_server_result.job_id otjP0iG-z440jrgM69w4rg _model_server_result.datetime_utc '2024-11-26 21:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 4KN2 # _exptl.entry_id 4KN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KN2 _cell.length_a 97.443 _cell.length_b 97.443 _cell.length_c 348.105 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,P 1 1 B,H,I,J,K,Q 2 1 C,L,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 31 1_555 A SG CYS 38 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 30 A CYS 51 1_555 A SG CYS 78 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 39 A CYS 60 1_555 A SG CYS 82 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 62 A CYS 83 1_555 A SG CYS 148 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 69 A CYS 90 1_555 A SG CYS 119 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 108 A CYS 129 1_555 A SG CYS 182 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 112 A CYS 133 1_555 A SG CYS 162 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 A SG CYS 125 A CYS 146 1_555 A SG CYS 142 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf9 B SG CYS 10 B CYS 31 1_555 B SG CYS 38 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf10 B SG CYS 30 B CYS 51 1_555 B SG CYS 78 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf11 B SG CYS 39 B CYS 60 1_555 B SG CYS 82 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 62 B CYS 83 1_555 B SG CYS 148 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf13 B SG CYS 69 B CYS 90 1_555 B SG CYS 119 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf14 B SG CYS 108 B CYS 129 1_555 B SG CYS 182 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 B SG CYS 112 B CYS 133 1_555 B SG CYS 162 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 B SG CYS 125 B CYS 146 1_555 B SG CYS 142 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf17 C SG CYS 10 C CYS 31 1_555 C SG CYS 38 C CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf18 C SG CYS 30 C CYS 51 1_555 C SG CYS 78 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf19 C SG CYS 39 C CYS 60 1_555 C SG CYS 82 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf20 C SG CYS 62 C CYS 83 1_555 C SG CYS 148 C CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf21 C SG CYS 69 C CYS 90 1_555 C SG CYS 119 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf22 C SG CYS 108 C CYS 129 1_555 C SG CYS 182 C CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf23 C SG CYS 112 C CYS 133 1_555 C SG CYS 162 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf24 C SG CYS 125 C CYS 146 1_555 C SG CYS 142 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? covale ? covale1 A ND2 ASN 174 A ASN 195 1_555 F C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 174 B ASN 195 1_555 J C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 C ND2 ASN 174 C ASN 195 1_555 N C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A OG SER 83 A SER 104 1_555 D K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.287 ? metalc ? metalc2 B OG SER 83 B SER 104 1_555 H K K . B K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.224 ? metalc ? metalc3 C OG SER 83 C SER 104 1_555 L K K . C K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.288 ? metalc ? metalc4 C OD1 ASN 85 C ASN 106 1_555 L K K . C K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 291 n n C1 O1 NAG sing 292 n n C1 O5 NAG sing 293 n n C1 H1 NAG sing 294 n n C2 C3 NAG sing 295 n n C2 N2 NAG sing 296 n n C2 H2 NAG sing 297 n n C3 C4 NAG sing 298 n n C3 O3 NAG sing 299 n n C3 H3 NAG sing 300 n n C4 C5 NAG sing 301 n n C4 O4 NAG sing 302 n n C4 H4 NAG sing 303 n n C5 C6 NAG sing 304 n n C5 O5 NAG sing 305 n n C5 H5 NAG sing 306 n n C6 O6 NAG sing 307 n n C6 H61 NAG sing 308 n n C6 H62 NAG sing 309 n n C7 C8 NAG sing 310 n n C7 N2 NAG sing 311 n n C7 O7 NAG doub 312 n n C8 H81 NAG sing 313 n n C8 H82 NAG sing 314 n n C8 H83 NAG sing 315 n n N2 HN2 NAG sing 316 n n O1 HO1 NAG sing 317 n n O3 HO3 NAG sing 318 n n O4 HO4 NAG sing 319 n n O6 HO6 NAG sing 320 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4KN2 _atom_sites.fract_transf_matrix[1][1] 0.010262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 K A 1 301 251 K K . E 3 CL A 1 302 261 CL CL . F 4 NAG A 1 303 301 NAG NAG . G 5 LYA A 1 304 241 LYA LYA . H 2 K B 1 301 251 K K . I 3 CL B 1 302 261 CL CL . J 4 NAG B 1 303 301 NAG NAG . K 5 LYA B 1 304 241 LYA LYA . L 2 K C 1 301 251 K K . M 3 CL C 1 302 261 CL CL . N 4 NAG C 1 303 301 NAG NAG . O 5 LYA C 1 304 241 LYA LYA . P 6 HOH A 1 401 1 HOH HOH . P 6 HOH A 2 402 3 HOH HOH . P 6 HOH A 3 403 9 HOH HOH . P 6 HOH A 4 404 11 HOH HOH . P 6 HOH A 5 405 14 HOH HOH . P 6 HOH A 6 406 16 HOH HOH . P 6 HOH A 7 407 18 HOH HOH . P 6 HOH A 8 408 24 HOH HOH . P 6 HOH A 9 409 26 HOH HOH . P 6 HOH A 10 410 27 HOH HOH . P 6 HOH A 11 411 29 HOH HOH . P 6 HOH A 12 412 34 HOH HOH . P 6 HOH A 13 413 41 HOH HOH . P 6 HOH A 14 414 43 HOH HOH . P 6 HOH A 15 415 44 HOH HOH . P 6 HOH A 16 416 48 HOH HOH . P 6 HOH A 17 417 49 HOH HOH . P 6 HOH A 18 418 51 HOH HOH . P 6 HOH A 19 419 52 HOH HOH . P 6 HOH A 20 420 56 HOH HOH . P 6 HOH A 21 421 59 HOH HOH . P 6 HOH A 22 422 61 HOH HOH . P 6 HOH A 23 423 64 HOH HOH . P 6 HOH A 24 424 66 HOH HOH . P 6 HOH A 25 425 68 HOH HOH . P 6 HOH A 26 426 69 HOH HOH . P 6 HOH A 27 427 71 HOH HOH . P 6 HOH A 28 428 75 HOH HOH . P 6 HOH A 29 429 83 HOH HOH . P 6 HOH A 30 430 91 HOH HOH . P 6 HOH A 31 431 95 HOH HOH . P 6 HOH A 32 432 96 HOH HOH . P 6 HOH A 33 433 100 HOH HOH . P 6 HOH A 34 434 101 HOH HOH . P 6 HOH A 35 435 103 HOH HOH . P 6 HOH A 36 436 106 HOH HOH . P 6 HOH A 37 437 109 HOH HOH . P 6 HOH A 38 438 110 HOH HOH . P 6 HOH A 39 439 113 HOH HOH . Q 6 HOH B 1 401 4 HOH HOH . Q 6 HOH B 2 402 12 HOH HOH . Q 6 HOH B 3 403 15 HOH HOH . Q 6 HOH B 4 404 17 HOH HOH . Q 6 HOH B 5 405 19 HOH HOH . Q 6 HOH B 6 406 20 HOH HOH . Q 6 HOH B 7 407 21 HOH HOH . Q 6 HOH B 8 408 22 HOH HOH . Q 6 HOH B 9 409 23 HOH HOH . Q 6 HOH B 10 410 25 HOH HOH . Q 6 HOH B 11 411 28 HOH HOH . Q 6 HOH B 12 412 30 HOH HOH . Q 6 HOH B 13 413 32 HOH HOH . Q 6 HOH B 14 414 33 HOH HOH . Q 6 HOH B 15 415 35 HOH HOH . Q 6 HOH B 16 416 36 HOH HOH . Q 6 HOH B 17 417 37 HOH HOH . Q 6 HOH B 18 418 38 HOH HOH . Q 6 HOH B 19 419 39 HOH HOH . Q 6 HOH B 20 420 40 HOH HOH . Q 6 HOH B 21 421 42 HOH HOH . Q 6 HOH B 22 422 47 HOH HOH . Q 6 HOH B 23 423 58 HOH HOH . Q 6 HOH B 24 424 62 HOH HOH . Q 6 HOH B 25 425 63 HOH HOH . Q 6 HOH B 26 426 65 HOH HOH . Q 6 HOH B 27 427 70 HOH HOH . Q 6 HOH B 28 428 73 HOH HOH . Q 6 HOH B 29 429 74 HOH HOH . Q 6 HOH B 30 430 76 HOH HOH . Q 6 HOH B 31 431 77 HOH HOH . Q 6 HOH B 32 432 80 HOH HOH . Q 6 HOH B 33 433 86 HOH HOH . Q 6 HOH B 34 434 89 HOH HOH . Q 6 HOH B 35 435 92 HOH HOH . Q 6 HOH B 36 436 98 HOH HOH . Q 6 HOH B 37 437 99 HOH HOH . Q 6 HOH B 38 438 105 HOH HOH . Q 6 HOH B 39 439 108 HOH HOH . Q 6 HOH B 40 440 111 HOH HOH . Q 6 HOH B 41 441 114 HOH HOH . R 6 HOH C 1 401 2 HOH HOH . R 6 HOH C 2 402 5 HOH HOH . R 6 HOH C 3 403 6 HOH HOH . R 6 HOH C 4 404 7 HOH HOH . R 6 HOH C 5 405 8 HOH HOH . R 6 HOH C 6 406 10 HOH HOH . R 6 HOH C 7 407 13 HOH HOH . R 6 HOH C 8 408 31 HOH HOH . R 6 HOH C 9 409 45 HOH HOH . R 6 HOH C 10 410 46 HOH HOH . R 6 HOH C 11 411 50 HOH HOH . R 6 HOH C 12 412 53 HOH HOH . R 6 HOH C 13 413 54 HOH HOH . R 6 HOH C 14 414 55 HOH HOH . R 6 HOH C 15 415 57 HOH HOH . R 6 HOH C 16 416 60 HOH HOH . R 6 HOH C 17 417 67 HOH HOH . R 6 HOH C 18 418 72 HOH HOH . R 6 HOH C 19 419 78 HOH HOH . R 6 HOH C 20 420 79 HOH HOH . R 6 HOH C 21 421 81 HOH HOH . R 6 HOH C 22 422 82 HOH HOH . R 6 HOH C 23 423 84 HOH HOH . R 6 HOH C 24 424 85 HOH HOH . R 6 HOH C 25 425 87 HOH HOH . R 6 HOH C 26 426 88 HOH HOH . R 6 HOH C 27 427 90 HOH HOH . R 6 HOH C 28 428 93 HOH HOH . R 6 HOH C 29 429 94 HOH HOH . R 6 HOH C 30 430 97 HOH HOH . R 6 HOH C 31 431 102 HOH HOH . R 6 HOH C 32 432 104 HOH HOH . R 6 HOH C 33 433 107 HOH HOH . R 6 HOH C 34 434 112 HOH HOH . R 6 HOH C 35 435 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 4 6.914 44.716 25.756 1 28.3 ? C1 NAG 303 B 1 HETATM 2 C C2 NAG . . . J 4 7.729 45.842 26.381 1 37.93 ? C2 NAG 303 B 1 HETATM 3 C C3 NAG . . . J 4 7.219 46.155 27.797 1 41 ? C3 NAG 303 B 1 HETATM 4 C C4 NAG . . . J 4 5.716 46.455 27.744 1 46.73 ? C4 NAG 303 B 1 HETATM 5 C C5 NAG . . . J 4 5.003 45.28 27.074 1 46.28 ? C5 NAG 303 B 1 HETATM 6 C C6 NAG . . . J 4 3.488 45.476 26.978 1 53.31 ? C6 NAG 303 B 1 HETATM 7 C C7 NAG . . . J 4 10.101 46.261 25.852 1 35.7 ? C7 NAG 303 B 1 HETATM 8 C C8 NAG . . . J 4 11.483 45.691 25.889 1 37.16 ? C8 NAG 303 B 1 HETATM 9 N N2 NAG . . . J 4 9.142 45.5 26.392 1 34.42 ? N2 NAG 303 B 1 HETATM 10 O O3 NAG . . . J 4 7.954 47.249 28.312 1 37.72 ? O3 NAG 303 B 1 HETATM 11 O O4 NAG . . . J 4 5.15 46.795 29.008 1 45.77 ? O4 NAG 303 B 1 HETATM 12 O O5 NAG . . . J 4 5.542 45.07 25.775 1 50.35 ? O5 NAG 303 B 1 HETATM 13 O O6 NAG . . . J 4 3.084 46.233 25.849 1 58.11 ? O6 NAG 303 B 1 HETATM 14 O O7 NAG . . . J 4 9.923 47.371 25.348 1 26.54 ? O7 NAG 303 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #