data_4KN6 # _model_server_result.job_id 8tIN5dJPwPyFb6kqU-HsQQ _model_server_result.datetime_utc '2025-03-06 10:05:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4KN6 # _exptl.entry_id 4KN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 369.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydropyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KN6 _cell.length_a 46.858 _cell.length_b 73.4 _cell.length_c 109.134 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 F N3 O9 P' _chem_comp.formula_weight 369.197 _chem_comp.id 1RP _chem_comp.mon_nstd_flag . _chem_comp.name 6-fluoro-3-oxo-4-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydropyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC PAX 1RP doub 1 n n OAB CAO 1RP doub 2 n n OAH PAX 1RP sing 3 n n PAX OAG 1RP sing 4 n n PAX O5' 1RP sing 5 n n NAA CAO 1RP sing 6 n n CAO CAR 1RP sing 7 n n OAD CAQ 1RP doub 8 n n O5' C5' 1RP sing 9 n n C5' C4' 1RP sing 10 n n CAR CAQ 1RP sing 11 n n CAR NAL 1RP doub 12 n n CAQ NAW 1RP sing 13 n n O4' C4' 1RP sing 14 n n O4' C1' 1RP sing 15 n n C4' C3' 1RP sing 16 n n NAL CAP 1RP sing 17 n n NAW C1' 1RP sing 18 n n NAW CAJ 1RP sing 19 n n C3' C2' 1RP sing 20 n n C3' O3' 1RP sing 21 n n C1' C2' 1RP sing 22 n n C2' O2' 1RP sing 23 n n CAP CAJ 1RP doub 24 n n CAP FAI 1RP sing 25 n n OAG H1 1RP sing 26 n n OAH H2 1RP sing 27 n n C5' H3 1RP sing 28 n n C5' H4 1RP sing 29 n n C4' H5 1RP sing 30 n n C3' H6 1RP sing 31 n n O3' H7 1RP sing 32 n n C2' H8 1RP sing 33 n n O2' H9 1RP sing 34 n n C1' H10 1RP sing 35 n n CAJ H11 1RP sing 36 n n NAA H14 1RP sing 37 n n NAA H15 1RP sing 38 n n # _atom_sites.entry_id 4KN6 _atom_sites.fract_transf_matrix[1][1] 0.021341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1RP A 1 301 1 1RP DRG . C 3 HOH A 1 401 2 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 6 HOH HOH . C 3 HOH A 4 404 7 HOH HOH . C 3 HOH A 5 405 8 HOH HOH . C 3 HOH A 6 406 9 HOH HOH . C 3 HOH A 7 407 10 HOH HOH . C 3 HOH A 8 408 11 HOH HOH . C 3 HOH A 9 409 12 HOH HOH . C 3 HOH A 10 410 14 HOH HOH . C 3 HOH A 11 411 15 HOH HOH . C 3 HOH A 12 412 16 HOH HOH . C 3 HOH A 13 413 17 HOH HOH . C 3 HOH A 14 414 18 HOH HOH . C 3 HOH A 15 415 19 HOH HOH . C 3 HOH A 16 416 20 HOH HOH . C 3 HOH A 17 417 22 HOH HOH . C 3 HOH A 18 418 23 HOH HOH . C 3 HOH A 19 419 24 HOH HOH . C 3 HOH A 20 420 25 HOH HOH . C 3 HOH A 21 421 26 HOH HOH . C 3 HOH A 22 422 27 HOH HOH . C 3 HOH A 23 423 28 HOH HOH . C 3 HOH A 24 424 29 HOH HOH . C 3 HOH A 25 425 30 HOH HOH . C 3 HOH A 26 426 31 HOH HOH . C 3 HOH A 27 427 32 HOH HOH . C 3 HOH A 28 428 35 HOH HOH . C 3 HOH A 29 429 37 HOH HOH . C 3 HOH A 30 430 38 HOH HOH . C 3 HOH A 31 431 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAG 1RP . . . B 2 0.804 -26.42 -18.801 1 43.27 ? OAG 1RP 301 A 1 HETATM 2 P PAX 1RP . . . B 2 1.219 -24.957 -19.134 1 49.21 ? PAX 1RP 301 A 1 HETATM 3 O OAH 1RP . . . B 2 0.026 -24.152 -19.495 1 44.25 ? OAH 1RP 301 A 1 HETATM 4 O OAC 1RP . . . B 2 2.193 -24.97 -20.285 1 48.26 ? OAC 1RP 301 A 1 HETATM 5 O O5' 1RP . . . B 2 1.935 -24.326 -17.9 1 48.48 ? O5' 1RP 301 A 1 HETATM 6 C C5' 1RP . . . B 2 3.255 -24.649 -17.679 1 46.42 ? C5' 1RP 301 A 1 HETATM 7 C C4' 1RP . . . B 2 3.83 -24.209 -16.441 1 46.25 ? C4' 1RP 301 A 1 HETATM 8 O O4' 1RP . . . B 2 4.928 -23.35 -16.675 1 44.95 ? O4' 1RP 301 A 1 HETATM 9 C C3' 1RP . . . B 2 2.83 -23.407 -15.702 1 47.25 ? C3' 1RP 301 A 1 HETATM 10 O O3' 1RP . . . B 2 2.436 -24.09 -14.583 1 49.18 ? O3' 1RP 301 A 1 HETATM 11 C C2' 1RP . . . B 2 3.497 -22.192 -15.336 1 46.95 ? C2' 1RP 301 A 1 HETATM 12 O O2' 1RP . . . B 2 3.28 -21.907 -14.017 1 49.47 ? O2' 1RP 301 A 1 HETATM 13 C C1' 1RP . . . B 2 4.942 -22.476 -15.574 1 44.93 ? C1' 1RP 301 A 1 HETATM 14 N NAW 1RP . . . B 2 5.624 -21.257 -15.827 1 45.72 ? NAW 1RP 301 A 1 HETATM 15 C CAQ 1RP . . . B 2 5.455 -20.668 -17.022 1 41.52 ? CAQ 1RP 301 A 1 HETATM 16 O OAD 1RP . . . B 2 4.616 -21.266 -17.986 1 36.32 ? OAD 1RP 301 A 1 HETATM 17 C CAJ 1RP . . . B 2 6.411 -20.712 -14.896 1 46.11 ? CAJ 1RP 301 A 1 HETATM 18 C CAP 1RP . . . B 2 7.074 -19.511 -15.163 1 44.56 ? CAP 1RP 301 A 1 HETATM 19 F FAI 1RP . . . B 2 7.852 -18.95 -14.273 1 49.05 ? FAI 1RP 301 A 1 HETATM 20 N NAL 1RP . . . B 2 6.903 -18.926 -16.36 1 39.9 ? NAL 1RP 301 A 1 HETATM 21 C CAR 1RP . . . B 2 6.115 -19.472 -17.289 1 41.19 ? CAR 1RP 301 A 1 HETATM 22 C CAO 1RP . . . B 2 5.944 -18.766 -18.645 1 39.49 ? CAO 1RP 301 A 1 HETATM 23 O OAB 1RP . . . B 2 5.13 -19.229 -19.512 1 41.8 ? OAB 1RP 301 A 1 HETATM 24 N NAA 1RP . . . B 2 6.704 -17.592 -18.914 1 34.65 ? NAA 1RP 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 161 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #