data_4KOL
#
_model_server_result.job_id            '_hYYVuO7Sx4QS5fwn4rYng' 
_model_server_result.datetime_utc      '2024-10-17 10:19:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kol 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4KOL 
#
_exptl.entry_id    4KOL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4KOL 
_cell.length_a            116.898 
_cell.length_b            116.898 
_cell.length_c            296.588 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KOL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -58.449 101.236638 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -116.898 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 4 1_555 B SG CYS 137 B CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 40 A CYS 42 1_555 A SG CYS 266 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 52 A CYS 54 1_555 A SG CYS 64 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf4 A SG CYS 85 A CYS 87 1_555 A SG CYS 127 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 270 A CYS 272 1_555 A SG CYS 294 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf6 B SG CYS 144 B CYS 465 1_555 B SG CYS 148 B CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 26 A ASN 28 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 A ND2 ASN 229 A ASN 231 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale3 B ND2 ASN 82 B ASN 403 1_555 E C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4KOL 
_atom_sites.fract_transf_matrix[1][1]    0.008554 
_atom_sites.fract_transf_matrix[1][2]    0.004939 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 3 NAG A 1 602 602 NAG NAG . 
E 3 NAG B 1 501 603 NAG NAG . 
F 4 HOH A 1 701 9 HOH HOH . 
F 4 HOH A 2 702 10 HOH HOH . 
F 4 HOH A 3 703 11 HOH HOH . 
F 4 HOH A 4 704 12 HOH HOH . 
F 4 HOH A 5 705 13 HOH HOH . 
F 4 HOH A 6 706 15 HOH HOH . 
F 4 HOH A 7 707 16 HOH HOH . 
F 4 HOH A 8 708 18 HOH HOH . 
F 4 HOH A 9 709 19 HOH HOH . 
F 4 HOH A 10 710 20 HOH HOH . 
F 4 HOH A 11 711 21 HOH HOH . 
F 4 HOH A 12 712 22 HOH HOH . 
F 4 HOH A 13 713 23 HOH HOH . 
F 4 HOH A 14 714 24 HOH HOH . 
G 4 HOH B 1 601 1 HOH HOH . 
G 4 HOH B 2 602 2 HOH HOH . 
G 4 HOH B 3 603 3 HOH HOH . 
G 4 HOH B 4 604 4 HOH HOH . 
G 4 HOH B 5 605 5 HOH HOH . 
G 4 HOH B 6 606 6 HOH HOH . 
G 4 HOH B 7 607 8 HOH HOH . 
G 4 HOH B 8 608 14 HOH HOH . 
G 4 HOH B 9 609 17 HOH HOH . 
G 4 HOH B 10 610 25 HOH HOH . 
G 4 HOH B 11 611 26 HOH HOH . 
G 4 HOH B 12 612 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -46.332 13.725 32.802 1 58.49 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 -47.335 12.801 33.481 1 59.56 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 -47.73 11.652 32.561 1 58.36 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 -48.12 12.168 31.181 1 63.44 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 -47.07 13.13 30.639 1 66.45 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 -47.497 13.704 29.294 1 70.15 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 -47.352 12.505 35.889 1 69.43 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 -46.51 12.205 37.094 1 70.72 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 -46.775 12.279 34.713 1 64.23 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 -48.831 10.938 33.133 1 55.64 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 -48.264 11.063 30.281 1 50.77 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 -46.875 14.193 31.569 1 62.26 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 -47.397 12.689 28.289 1 90.93 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 -48.492 12.929 35.983 1 81.29 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#