data_4KOS # _model_server_result.job_id 5MMpPYXdkrylTWWGikG7bw _model_server_result.datetime_utc '2025-08-20 04:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4KOS # _exptl.entry_id 4KOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(6R,7S)-7-({[(cyanomethyl)sulfanyl]acetyl}amino)-7-methoxy-3-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-8-oxo-5-thia -1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KOS _cell.length_a 57.812 _cell.length_b 76.533 _cell.length_c 39.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H17 N7 O5 S3' _chem_comp.formula_weight 471.534 _chem_comp.id 4KO _chem_comp.mon_nstd_flag . _chem_comp.name '(6R,7S)-7-({[(cyanomethyl)sulfanyl]acetyl}amino)-7-methoxy-3-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-8-oxo-5-thia -1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cefmetazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 4KO sing 1 n n C1 H1 4KO sing 2 n n C1 H1A 4KO sing 3 n n C1 H1B 4KO sing 4 n n C2 N1 4KO sing 5 n y N4 N1 4KO sing 6 n y O1 C8 4KO doub 7 n n C3 S1 4KO sing 8 n n C2 S1 4KO sing 9 n n N2 C2 4KO doub 10 n y N2 N3 4KO sing 11 n y C9 O2 4KO doub 12 n n C11 S2 4KO sing 13 n n S2 C10 4KO sing 14 n n C3 C4 4KO sing 15 n n C3 H3 4KO sing 16 n n C3 H3A 4KO sing 17 n n N3 N4 4KO doub 18 n y C7 O3 4KO sing 19 n n O3 C13 4KO sing 20 n n C14 S3 4KO sing 21 n n S3 C6 4KO sing 22 n n C4 C5 4KO doub 23 n n C4 C14 4KO sing 24 n n C15 O4 4KO sing 25 n n O4 HO4 4KO sing 26 n n C15 C5 4KO sing 27 n n C5 N5 4KO sing 28 n n N5 C8 4KO sing 29 n n N5 C6 4KO sing 30 n n O5 C15 4KO doub 31 n n C6 C7 4KO sing 32 n n C6 H6 4KO sing 33 n n N6 C9 4KO sing 34 n n N6 C7 4KO sing 35 n n N6 HN6 4KO sing 36 n n C8 C7 4KO sing 37 n n N7 C12 4KO trip 38 n n C10 C9 4KO sing 39 n n C10 H10 4KO sing 40 n n C10 H10A 4KO sing 41 n n C12 C11 4KO sing 42 n n C11 H11 4KO sing 43 n n C11 H11A 4KO sing 44 n n C13 H13 4KO sing 45 n n C13 H13A 4KO sing 46 n n C13 H13B 4KO sing 47 n n C14 H14 4KO sing 48 n n C14 H14A 4KO sing 49 n n # _atom_sites.entry_id 4KOS _atom_sites.fract_transf_matrix[1][1] 0.017297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4KO A 1 201 1 4KO CEF . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 4 SO4 SO4 . F 4 EDO A 1 205 1 EDO EDO . G 4 EDO A 1 206 3 EDO EDO . H 4 EDO A 1 207 4 EDO EDO . I 4 EDO A 1 208 1 EDO EDO . J 4 EDO A 1 209 1 EDO EDO . K 4 EDO A 1 210 1 EDO EDO . L 4 EDO A 1 211 1 EDO EDO . M 4 EDO A 1 212 1 EDO EDO . N 4 EDO A 1 213 1 EDO EDO . O 4 EDO A 1 214 1 EDO EDO . P 4 EDO A 1 215 1 EDO EDO . Q 3 SO4 A 1 216 1 SO4 SO4 . R 4 EDO A 1 217 1 EDO EDO . S 5 HOH A 1 301 1 HOH HOH . S 5 HOH A 2 302 2 HOH HOH . S 5 HOH A 3 303 3 HOH HOH . S 5 HOH A 4 304 4 HOH HOH . S 5 HOH A 5 305 5 HOH HOH . S 5 HOH A 6 306 6 HOH HOH . S 5 HOH A 7 307 7 HOH HOH . S 5 HOH A 8 308 8 HOH HOH . S 5 HOH A 9 309 9 HOH HOH . S 5 HOH A 10 310 10 HOH HOH . S 5 HOH A 11 311 11 HOH HOH . S 5 HOH A 12 312 12 HOH HOH . S 5 HOH A 13 313 13 HOH HOH . S 5 HOH A 14 314 14 HOH HOH . S 5 HOH A 15 315 15 HOH HOH . S 5 HOH A 16 316 16 HOH HOH . S 5 HOH A 17 317 17 HOH HOH . S 5 HOH A 18 318 18 HOH HOH . S 5 HOH A 19 319 19 HOH HOH . S 5 HOH A 20 320 20 HOH HOH . S 5 HOH A 21 321 21 HOH HOH . S 5 HOH A 22 322 22 HOH HOH . S 5 HOH A 23 323 23 HOH HOH . S 5 HOH A 24 324 24 HOH HOH . S 5 HOH A 25 325 25 HOH HOH . S 5 HOH A 26 326 26 HOH HOH . S 5 HOH A 27 327 27 HOH HOH . S 5 HOH A 28 328 28 HOH HOH . S 5 HOH A 29 329 29 HOH HOH . S 5 HOH A 30 330 30 HOH HOH . S 5 HOH A 31 331 31 HOH HOH . S 5 HOH A 32 332 32 HOH HOH . S 5 HOH A 33 333 33 HOH HOH . S 5 HOH A 34 334 34 HOH HOH . S 5 HOH A 35 335 35 HOH HOH . S 5 HOH A 36 336 36 HOH HOH . S 5 HOH A 37 337 37 HOH HOH . S 5 HOH A 38 338 38 HOH HOH . S 5 HOH A 39 339 39 HOH HOH . S 5 HOH A 40 340 40 HOH HOH . S 5 HOH A 41 341 41 HOH HOH . S 5 HOH A 42 342 42 HOH HOH . S 5 HOH A 43 343 43 HOH HOH . S 5 HOH A 44 344 44 HOH HOH . S 5 HOH A 45 345 45 HOH HOH . S 5 HOH A 46 346 46 HOH HOH . S 5 HOH A 47 347 47 HOH HOH . S 5 HOH A 48 348 48 HOH HOH . S 5 HOH A 49 349 49 HOH HOH . S 5 HOH A 50 350 50 HOH HOH . S 5 HOH A 51 351 51 HOH HOH . S 5 HOH A 52 352 52 HOH HOH . S 5 HOH A 53 353 53 HOH HOH . S 5 HOH A 54 354 54 HOH HOH . S 5 HOH A 55 355 55 HOH HOH . S 5 HOH A 56 356 56 HOH HOH . S 5 HOH A 57 357 57 HOH HOH . S 5 HOH A 58 358 58 HOH HOH . S 5 HOH A 59 359 59 HOH HOH . S 5 HOH A 60 360 60 HOH HOH . S 5 HOH A 61 361 61 HOH HOH . S 5 HOH A 62 362 62 HOH HOH . S 5 HOH A 63 363 63 HOH HOH . S 5 HOH A 64 364 64 HOH HOH . S 5 HOH A 65 365 65 HOH HOH . S 5 HOH A 66 366 66 HOH HOH . S 5 HOH A 67 367 67 HOH HOH . S 5 HOH A 68 368 68 HOH HOH . S 5 HOH A 69 369 69 HOH HOH . S 5 HOH A 70 370 70 HOH HOH . S 5 HOH A 71 371 71 HOH HOH . S 5 HOH A 72 372 72 HOH HOH . S 5 HOH A 73 373 73 HOH HOH . S 5 HOH A 74 374 74 HOH HOH . S 5 HOH A 75 375 75 HOH HOH . S 5 HOH A 76 376 76 HOH HOH . S 5 HOH A 77 377 77 HOH HOH . S 5 HOH A 78 378 78 HOH HOH . S 5 HOH A 79 379 79 HOH HOH . S 5 HOH A 80 380 80 HOH HOH . S 5 HOH A 81 381 81 HOH HOH . S 5 HOH A 82 382 82 HOH HOH . S 5 HOH A 83 383 83 HOH HOH . S 5 HOH A 84 384 84 HOH HOH . S 5 HOH A 85 385 85 HOH HOH . S 5 HOH A 86 386 86 HOH HOH . S 5 HOH A 87 387 87 HOH HOH . S 5 HOH A 88 388 89 HOH HOH . S 5 HOH A 89 389 90 HOH HOH . S 5 HOH A 90 390 91 HOH HOH . S 5 HOH A 91 391 92 HOH HOH . S 5 HOH A 92 392 93 HOH HOH . S 5 HOH A 93 393 94 HOH HOH . S 5 HOH A 94 394 95 HOH HOH . S 5 HOH A 95 395 96 HOH HOH . S 5 HOH A 96 396 97 HOH HOH . S 5 HOH A 97 397 98 HOH HOH . S 5 HOH A 98 398 99 HOH HOH . S 5 HOH A 99 399 100 HOH HOH . S 5 HOH A 100 400 101 HOH HOH . S 5 HOH A 101 401 102 HOH HOH . S 5 HOH A 102 402 103 HOH HOH . S 5 HOH A 103 403 104 HOH HOH . S 5 HOH A 104 404 105 HOH HOH . S 5 HOH A 105 405 106 HOH HOH . S 5 HOH A 106 406 107 HOH HOH . S 5 HOH A 107 407 108 HOH HOH . S 5 HOH A 108 408 109 HOH HOH . S 5 HOH A 109 409 110 HOH HOH . S 5 HOH A 110 410 111 HOH HOH . S 5 HOH A 111 411 112 HOH HOH . S 5 HOH A 112 412 113 HOH HOH . S 5 HOH A 113 413 114 HOH HOH . S 5 HOH A 114 414 115 HOH HOH . S 5 HOH A 115 415 116 HOH HOH . S 5 HOH A 116 416 117 HOH HOH . S 5 HOH A 117 417 118 HOH HOH . S 5 HOH A 118 418 119 HOH HOH . S 5 HOH A 119 419 120 HOH HOH . S 5 HOH A 120 420 121 HOH HOH . S 5 HOH A 121 421 122 HOH HOH . S 5 HOH A 122 422 123 HOH HOH . S 5 HOH A 123 423 124 HOH HOH . S 5 HOH A 124 424 125 HOH HOH . S 5 HOH A 125 425 126 HOH HOH . S 5 HOH A 126 426 127 HOH HOH . S 5 HOH A 127 427 128 HOH HOH . S 5 HOH A 128 428 129 HOH HOH . S 5 HOH A 129 429 130 HOH HOH . S 5 HOH A 130 430 131 HOH HOH . S 5 HOH A 131 431 132 HOH HOH . S 5 HOH A 132 432 133 HOH HOH . S 5 HOH A 133 433 134 HOH HOH . S 5 HOH A 134 434 135 HOH HOH . S 5 HOH A 135 435 136 HOH HOH . S 5 HOH A 136 436 137 HOH HOH . S 5 HOH A 137 437 138 HOH HOH . S 5 HOH A 138 438 139 HOH HOH . S 5 HOH A 139 439 140 HOH HOH . S 5 HOH A 140 440 141 HOH HOH . S 5 HOH A 141 441 142 HOH HOH . S 5 HOH A 142 442 143 HOH HOH . S 5 HOH A 143 443 144 HOH HOH . S 5 HOH A 144 444 145 HOH HOH . S 5 HOH A 145 445 146 HOH HOH . S 5 HOH A 146 446 147 HOH HOH . S 5 HOH A 147 447 148 HOH HOH . S 5 HOH A 148 448 149 HOH HOH . S 5 HOH A 149 449 150 HOH HOH . S 5 HOH A 150 450 151 HOH HOH . S 5 HOH A 151 451 152 HOH HOH . S 5 HOH A 152 452 153 HOH HOH . S 5 HOH A 153 453 154 HOH HOH . S 5 HOH A 154 454 155 HOH HOH . S 5 HOH A 155 455 156 HOH HOH . S 5 HOH A 156 456 157 HOH HOH . S 5 HOH A 157 457 158 HOH HOH . S 5 HOH A 158 458 159 HOH HOH . S 5 HOH A 159 459 160 HOH HOH . S 5 HOH A 160 460 161 HOH HOH . S 5 HOH A 161 461 162 HOH HOH . S 5 HOH A 162 462 163 HOH HOH . S 5 HOH A 163 463 165 HOH HOH . S 5 HOH A 164 464 166 HOH HOH . S 5 HOH A 165 465 167 HOH HOH . S 5 HOH A 166 466 169 HOH HOH . S 5 HOH A 167 467 170 HOH HOH . S 5 HOH A 168 468 171 HOH HOH . S 5 HOH A 169 469 172 HOH HOH . S 5 HOH A 170 470 174 HOH HOH . S 5 HOH A 171 471 175 HOH HOH . S 5 HOH A 172 472 176 HOH HOH . S 5 HOH A 173 473 177 HOH HOH . S 5 HOH A 174 474 178 HOH HOH . S 5 HOH A 175 475 180 HOH HOH . S 5 HOH A 176 476 181 HOH HOH . S 5 HOH A 177 477 183 HOH HOH . S 5 HOH A 178 478 184 HOH HOH . S 5 HOH A 179 479 185 HOH HOH . S 5 HOH A 180 480 187 HOH HOH . S 5 HOH A 181 481 188 HOH HOH . S 5 HOH A 182 482 189 HOH HOH . S 5 HOH A 183 483 190 HOH HOH . S 5 HOH A 184 484 191 HOH HOH . S 5 HOH A 185 485 192 HOH HOH . S 5 HOH A 186 486 193 HOH HOH . S 5 HOH A 187 487 194 HOH HOH . S 5 HOH A 188 488 195 HOH HOH . S 5 HOH A 189 489 196 HOH HOH . S 5 HOH A 190 490 197 HOH HOH . S 5 HOH A 191 491 198 HOH HOH . S 5 HOH A 192 492 199 HOH HOH . S 5 HOH A 193 493 200 HOH HOH . S 5 HOH A 194 494 201 HOH HOH . S 5 HOH A 195 495 202 HOH HOH . S 5 HOH A 196 496 203 HOH HOH . S 5 HOH A 197 497 204 HOH HOH . S 5 HOH A 198 498 205 HOH HOH . S 5 HOH A 199 499 206 HOH HOH . S 5 HOH A 200 500 207 HOH HOH . S 5 HOH A 201 501 208 HOH HOH . S 5 HOH A 202 502 209 HOH HOH . S 5 HOH A 203 503 210 HOH HOH . S 5 HOH A 204 504 211 HOH HOH . S 5 HOH A 205 505 212 HOH HOH . S 5 HOH A 206 506 213 HOH HOH . S 5 HOH A 207 507 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4KO . A . B 2 -9.325 8.932 10.488 0.8 37.58 ? C1 4KO 201 A 1 HETATM 2 N N1 4KO . A . B 2 -10.018 9.125 9.224 0.8 35.78 ? N1 4KO 201 A 1 HETATM 3 O O1 4KO . A . B 2 -17.277 4.103 9.485 0.8 18.86 ? O1 4KO 201 A 1 HETATM 4 S S1 4KO . A . B 2 -10.921 6.643 8.988 0.8 32.81 ? S1 4KO 201 A 1 HETATM 5 C C2 4KO . A . B 2 -10.69 8.239 8.563 0.8 29.83 ? C2 4KO 201 A 1 HETATM 6 N N2 4KO . A . B 2 -11.156 8.889 7.486 0.8 28.88 ? N2 4KO 201 A 1 HETATM 7 O O2 4KO . A . B 2 -14.348 -0.227 10.054 0.8 20.28 ? O2 4KO 201 A 1 HETATM 8 S S2 4KO . A . B 2 -14.338 -0.976 6.874 0.8 19.87 ? S2 4KO 201 A 1 HETATM 9 C C3 4KO . A . B 2 -12.207 6.176 7.779 0.8 17.65 ? C3 4KO 201 A 1 HETATM 10 N N3 4KO . A . B 2 -10.673 10.143 7.541 0.8 31.26 ? N3 4KO 201 A 1 HETATM 11 O O3 4KO . A . B 2 -15.908 1.931 11.494 0.8 20.29 ? O3 4KO 201 A 1 HETATM 12 S S3 4KO . A . B 2 -12.866 2.345 9.04 0.8 18.19 ? S3 4KO 201 A 1 HETATM 13 C C4 4KO . A . B 2 -12.94 5.103 8.489 0.8 16.57 ? C4 4KO 201 A 1 HETATM 14 N N4 4KO . A . B 2 -9.986 10.332 8.631 0.8 35.48 ? N4 4KO 201 A 1 HETATM 15 O O4 4KO . A . B 2 -15.031 7.373 8.42 0.8 14.83 ? O4 4KO 201 A 1 HETATM 16 C C5 4KO . A . B 2 -14.269 5.166 8.676 0.8 15.89 ? C5 4KO 201 A 1 HETATM 17 N N5 4KO . A . B 2 -14.909 4.121 9.37 0.8 16.68 ? N5 4KO 201 A 1 HETATM 18 O O5 4KO . A . B 2 -16.081 5.825 7.316 0.8 16.14 ? O5 4KO 201 A 1 HETATM 19 C C6 4KO . A . B 2 -14.183 3.017 10.051 0.8 17.1 ? C6 4KO 201 A 1 HETATM 20 N N6 4KO . A . B 2 -15.845 1.232 9.196 0.8 17.42 ? N6 4KO 201 A 1 HETATM 21 C C7 4KO . A . B 2 -15.555 2.283 10.151 0.8 17.82 ? C7 4KO 201 A 1 HETATM 22 N N7 4KO . A . B 2 -17.1 -0.937 4.472 0.8 30.32 ? N7 4KO 201 A 1 HETATM 23 C C8 4KO . A . B 2 -16.151 3.642 9.669 0.8 17.43 ? C8 4KO 201 A 1 HETATM 24 C C9 4KO . A . B 2 -15.241 0.039 9.24 0.8 17.79 ? C9 4KO 201 A 1 HETATM 25 C C10 4KO . A . B 2 -15.615 -0.926 8.146 0.8 18.09 ? C10 4KO 201 A 1 HETATM 26 C C11 4KO . A . B 2 -15.042 -2.073 5.555 0.8 23.16 ? C11 4KO 201 A 1 HETATM 27 C C12 4KO . A . B 2 -16.202 -1.47 4.937 0.8 23.08 ? C12 4KO 201 A 1 HETATM 28 C C13 4KO . A . B 2 -17.32 1.601 11.69 0.8 20.87 ? C13 4KO 201 A 1 HETATM 29 C C14 4KO . A . B 2 -12.052 3.94 8.887 0.8 16.67 ? C14 4KO 201 A 1 HETATM 30 C C15 4KO . A . B 2 -15.19 6.209 8.115 0.8 15 ? C15 4KO 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #