data_4KOV # _model_server_result.job_id O6WtkONhFjws0vh3BGJrfw _model_server_result.datetime_utc '2024-11-13 05:42:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4KOV # _exptl.entry_id 4KOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(6R,7R)-3-[(carbamoyloxy)methyl]-7-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KOV _cell.length_a 58.621 _cell.length_b 76.472 _cell.length_c 39.473 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 58.621 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N4 O8 S' _chem_comp.formula_weight 424.385 _chem_comp.id KOV _chem_comp.mon_nstd_flag . _chem_comp.name '(6R,7R)-3-[(carbamoyloxy)methyl]-7-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cefuroxime # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C9 KOV sing 182 n n C1 O1 KOV sing 183 n n C1 H1 KOV sing 184 n n C1 H1A KOV sing 185 n n C1 H1B KOV sing 186 n n N1 O1 KOV sing 187 n n C2 N1 KOV doub 188 z n C2 C7 KOV sing 189 n n N2 C7 KOV sing 190 n n N2 C8 KOV sing 191 n n N2 HN2 KOV sing 192 n n O2 C3 KOV sing 193 n y C3 C2 KOV sing 194 n n N3 C10 KOV sing 195 n n N3 C9 KOV sing 196 n n C4 C3 KOV doub 197 n y C4 H4 KOV sing 198 n n N4 HN4 KOV sing 199 n n N4 HN4A KOV sing 200 n n O4 C10 KOV doub 201 n n C5 C4 KOV sing 202 n y C5 C6 KOV doub 203 n y C5 H5 KOV sing 204 n n C6 O2 KOV sing 205 n y C6 H6 KOV sing 206 n n O6 C15 KOV doub 207 n n C7 O3 KOV doub 208 n n O7 HO7 KOV sing 209 n n C8 H8 KOV sing 210 n n O8 C16 KOV doub 211 n n C9 C8 KOV sing 212 n n C9 H9 KOV sing 213 n n C10 C8 KOV sing 214 n n C11 N3 KOV sing 215 n n C12 C11 KOV doub 216 n n C12 C13 KOV sing 217 n n C13 S KOV sing 218 n n C13 H13 KOV sing 219 n n C13 H13A KOV sing 220 n n C14 O5 KOV sing 221 n n C14 C12 KOV sing 222 n n C14 H14 KOV sing 223 n n C14 H14A KOV sing 224 n n C15 N4 KOV sing 225 n n C15 O5 KOV sing 226 n n C16 O7 KOV sing 227 n n C16 C11 KOV sing 228 n n # _atom_sites.entry_id 4KOV _atom_sites.fract_transf_matrix[1][1] 0.017059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 3 KOV A 1 204 1 KOV CE3 . F 4 EDO A 1 205 1 EDO EDO . G 4 EDO A 1 206 2 EDO EDO . H 4 EDO A 1 207 3 EDO EDO . I 4 EDO A 1 208 4 EDO EDO . J 4 EDO A 1 209 5 EDO EDO . K 4 EDO A 1 210 6 EDO EDO . L 4 EDO A 1 211 1 EDO EDO . M 4 EDO A 1 212 1 EDO EDO . N 5 HOH A 1 301 1 HOH HOH . N 5 HOH A 2 302 4 HOH HOH . N 5 HOH A 3 303 5 HOH HOH . N 5 HOH A 4 304 6 HOH HOH . N 5 HOH A 5 305 7 HOH HOH . N 5 HOH A 6 306 8 HOH HOH . N 5 HOH A 7 307 9 HOH HOH . N 5 HOH A 8 308 12 HOH HOH . N 5 HOH A 9 309 14 HOH HOH . N 5 HOH A 10 310 15 HOH HOH . N 5 HOH A 11 311 17 HOH HOH . N 5 HOH A 12 312 19 HOH HOH . N 5 HOH A 13 313 20 HOH HOH . N 5 HOH A 14 314 21 HOH HOH . N 5 HOH A 15 315 22 HOH HOH . N 5 HOH A 16 316 23 HOH HOH . N 5 HOH A 17 317 26 HOH HOH . N 5 HOH A 18 318 27 HOH HOH . N 5 HOH A 19 319 28 HOH HOH . N 5 HOH A 20 320 30 HOH HOH . N 5 HOH A 21 321 31 HOH HOH . N 5 HOH A 22 322 32 HOH HOH . N 5 HOH A 23 323 33 HOH HOH . N 5 HOH A 24 324 36 HOH HOH . N 5 HOH A 25 325 37 HOH HOH . N 5 HOH A 26 326 38 HOH HOH . N 5 HOH A 27 327 39 HOH HOH . N 5 HOH A 28 328 40 HOH HOH . N 5 HOH A 29 329 41 HOH HOH . N 5 HOH A 30 330 42 HOH HOH . N 5 HOH A 31 331 43 HOH HOH . N 5 HOH A 32 332 44 HOH HOH . N 5 HOH A 33 333 45 HOH HOH . N 5 HOH A 34 334 46 HOH HOH . N 5 HOH A 35 335 48 HOH HOH . N 5 HOH A 36 336 49 HOH HOH . N 5 HOH A 37 337 50 HOH HOH . N 5 HOH A 38 338 51 HOH HOH . N 5 HOH A 39 339 52 HOH HOH . N 5 HOH A 40 340 54 HOH HOH . N 5 HOH A 41 341 55 HOH HOH . N 5 HOH A 42 342 57 HOH HOH . N 5 HOH A 43 343 58 HOH HOH . N 5 HOH A 44 344 59 HOH HOH . N 5 HOH A 45 345 61 HOH HOH . N 5 HOH A 46 346 63 HOH HOH . N 5 HOH A 47 347 64 HOH HOH . N 5 HOH A 48 348 65 HOH HOH . N 5 HOH A 49 349 66 HOH HOH . N 5 HOH A 50 350 67 HOH HOH . N 5 HOH A 51 351 68 HOH HOH . N 5 HOH A 52 352 69 HOH HOH . N 5 HOH A 53 353 70 HOH HOH . N 5 HOH A 54 354 71 HOH HOH . N 5 HOH A 55 355 73 HOH HOH . N 5 HOH A 56 356 74 HOH HOH . N 5 HOH A 57 357 76 HOH HOH . N 5 HOH A 58 358 77 HOH HOH . N 5 HOH A 59 359 78 HOH HOH . N 5 HOH A 60 360 81 HOH HOH . N 5 HOH A 61 361 83 HOH HOH . N 5 HOH A 62 362 84 HOH HOH . N 5 HOH A 63 363 87 HOH HOH . N 5 HOH A 64 364 88 HOH HOH . N 5 HOH A 65 365 89 HOH HOH . N 5 HOH A 66 366 90 HOH HOH . N 5 HOH A 67 367 91 HOH HOH . N 5 HOH A 68 368 92 HOH HOH . N 5 HOH A 69 369 94 HOH HOH . N 5 HOH A 70 370 96 HOH HOH . N 5 HOH A 71 371 97 HOH HOH . N 5 HOH A 72 372 98 HOH HOH . N 5 HOH A 73 373 99 HOH HOH . N 5 HOH A 74 374 100 HOH HOH . N 5 HOH A 75 375 101 HOH HOH . N 5 HOH A 76 376 102 HOH HOH . N 5 HOH A 77 377 103 HOH HOH . N 5 HOH A 78 378 107 HOH HOH . N 5 HOH A 79 379 108 HOH HOH . N 5 HOH A 80 380 109 HOH HOH . N 5 HOH A 81 381 112 HOH HOH . N 5 HOH A 82 382 114 HOH HOH . N 5 HOH A 83 383 115 HOH HOH . N 5 HOH A 84 384 116 HOH HOH . N 5 HOH A 85 385 117 HOH HOH . N 5 HOH A 86 386 118 HOH HOH . N 5 HOH A 87 387 119 HOH HOH . N 5 HOH A 88 388 121 HOH HOH . N 5 HOH A 89 389 123 HOH HOH . N 5 HOH A 90 390 125 HOH HOH . N 5 HOH A 91 391 126 HOH HOH . N 5 HOH A 92 392 127 HOH HOH . N 5 HOH A 93 393 129 HOH HOH . N 5 HOH A 94 394 130 HOH HOH . N 5 HOH A 95 395 131 HOH HOH . N 5 HOH A 96 396 132 HOH HOH . N 5 HOH A 97 397 138 HOH HOH . N 5 HOH A 98 398 139 HOH HOH . N 5 HOH A 99 399 141 HOH HOH . N 5 HOH A 100 400 142 HOH HOH . N 5 HOH A 101 401 148 HOH HOH . N 5 HOH A 102 402 150 HOH HOH . N 5 HOH A 103 403 152 HOH HOH . N 5 HOH A 104 404 153 HOH HOH . N 5 HOH A 105 405 156 HOH HOH . N 5 HOH A 106 406 157 HOH HOH . N 5 HOH A 107 407 159 HOH HOH . N 5 HOH A 108 408 163 HOH HOH . N 5 HOH A 109 409 165 HOH HOH . N 5 HOH A 110 410 166 HOH HOH . N 5 HOH A 111 411 167 HOH HOH . N 5 HOH A 112 412 168 HOH HOH . N 5 HOH A 113 413 169 HOH HOH . N 5 HOH A 114 414 173 HOH HOH . N 5 HOH A 115 415 174 HOH HOH . N 5 HOH A 116 416 176 HOH HOH . N 5 HOH A 117 417 177 HOH HOH . N 5 HOH A 118 418 178 HOH HOH . N 5 HOH A 119 419 180 HOH HOH . N 5 HOH A 120 420 181 HOH HOH . N 5 HOH A 121 421 182 HOH HOH . N 5 HOH A 122 422 183 HOH HOH . N 5 HOH A 123 423 184 HOH HOH . N 5 HOH A 124 424 185 HOH HOH . N 5 HOH A 125 425 186 HOH HOH . N 5 HOH A 126 426 187 HOH HOH . N 5 HOH A 127 427 189 HOH HOH . N 5 HOH A 128 428 190 HOH HOH . N 5 HOH A 129 429 191 HOH HOH . N 5 HOH A 130 430 192 HOH HOH . N 5 HOH A 131 431 193 HOH HOH . N 5 HOH A 132 432 194 HOH HOH . N 5 HOH A 133 433 195 HOH HOH . N 5 HOH A 134 434 196 HOH HOH . N 5 HOH A 135 435 198 HOH HOH . N 5 HOH A 136 436 199 HOH HOH . N 5 HOH A 137 437 203 HOH HOH . N 5 HOH A 138 438 204 HOH HOH . N 5 HOH A 139 439 205 HOH HOH . N 5 HOH A 140 440 206 HOH HOH . N 5 HOH A 141 441 208 HOH HOH . N 5 HOH A 142 442 209 HOH HOH . N 5 HOH A 143 443 210 HOH HOH . N 5 HOH A 144 444 211 HOH HOH . N 5 HOH A 145 445 212 HOH HOH . N 5 HOH A 146 446 213 HOH HOH . N 5 HOH A 147 447 214 HOH HOH . N 5 HOH A 148 448 215 HOH HOH . N 5 HOH A 149 449 216 HOH HOH . N 5 HOH A 150 450 217 HOH HOH . N 5 HOH A 151 451 218 HOH HOH . N 5 HOH A 152 452 219 HOH HOH . N 5 HOH A 153 453 220 HOH HOH . N 5 HOH A 154 454 221 HOH HOH . N 5 HOH A 155 455 223 HOH HOH . N 5 HOH A 156 456 224 HOH HOH . N 5 HOH A 157 457 225 HOH HOH . N 5 HOH A 158 458 226 HOH HOH . N 5 HOH A 159 459 227 HOH HOH . N 5 HOH A 160 460 228 HOH HOH . N 5 HOH A 161 461 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S KOV . . . E 3 16.546 2.486 8.915 1 18.22 ? S KOV 204 A 1 HETATM 2 C C1 KOV . . . E 3 10.631 -1.496 10.652 1 58.3 ? C1 KOV 204 A 1 HETATM 3 N N1 KOV . . . E 3 12.572 -1.81 9.416 1 41.08 ? N1 KOV 204 A 1 HETATM 4 O O1 KOV . . . E 3 12.074 -1.408 10.677 1 55.31 ? O1 KOV 204 A 1 HETATM 5 C C2 KOV . . . E 3 13.611 -1.134 9.081 1 30.13 ? C2 KOV 204 A 1 HETATM 6 N N2 KOV . . . E 3 13.706 1.162 9.563 1 21.27 ? N2 KOV 204 A 1 HETATM 7 O O2 KOV . . . E 3 13.664 -2.48 7.119 1 30.24 ? O2 KOV 204 A 1 HETATM 8 C C3 KOV . . . E 3 14.217 -1.423 7.826 1 27.43 ? C3 KOV 204 A 1 HETATM 9 N N3 KOV . . . E 3 14.506 4.162 9.378 1 16.19 ? N3 KOV 204 A 1 HETATM 10 O O3 KOV . . . E 3 15.017 -0.213 10.762 1 28.63 ? O3 KOV 204 A 1 HETATM 11 C C4 KOV . . . E 3 15.246 -0.895 7.123 1 23.64 ? C4 KOV 204 A 1 HETATM 12 N N4 KOV . . . E 3 19.726 8.172 9.047 1 28.92 ? N4 KOV 204 A 1 HETATM 13 O O4 KOV . . . E 3 12.167 3.935 9.533 1 19.39 ? O4 KOV 204 A 1 HETATM 14 C C5 KOV . . . E 3 15.357 -1.678 5.933 1 24.25 ? C5 KOV 204 A 1 HETATM 15 O O5 KOV . . . E 3 18.025 6.912 8.581 1 24.36 ? O5 KOV 204 A 1 HETATM 16 C C6 KOV . . . E 3 14.413 -2.573 5.959 1 26.16 ? C6 KOV 204 A 1 HETATM 17 O O6 KOV . . . E 3 18.175 8.873 7.464 1 24.45 ? O6 KOV 204 A 1 HETATM 18 C C7 KOV . . . E 3 14.2 -0.022 9.879 1 25.81 ? C7 KOV 204 A 1 HETATM 19 O O7 KOV . . . E 3 14.054 7.387 8.467 1 17.29 ? O7 KOV 204 A 1 HETATM 20 C C8 KOV . . . E 3 14.02 2.378 10.291 1 18.51 ? C8 KOV 204 A 1 HETATM 21 O O8 KOV . . . E 3 13.106 5.759 7.338 1 16.69 ? O8 KOV 204 A 1 HETATM 22 C C9 KOV . . . E 3 15.326 3.135 10.055 1 17.81 ? C9 KOV 204 A 1 HETATM 23 C C10 KOV . . . E 3 13.342 3.643 9.684 1 15.41 ? C10 KOV 204 A 1 HETATM 24 C C11 KOV . . . E 3 15.047 5.238 8.61 1 15.02 ? C11 KOV 204 A 1 HETATM 25 C C12 KOV . . . E 3 16.319 5.217 8.339 1 15.46 ? C12 KOV 204 A 1 HETATM 26 C C13 KOV . . . E 3 17.315 4.124 8.608 1 18.33 ? C13 KOV 204 A 1 HETATM 27 C C14 KOV . . . E 3 16.98 6.399 7.637 1 17.61 ? C14 KOV 204 A 1 HETATM 28 C C15 KOV . . . E 3 18.619 8.061 8.286 1 28.28 ? C15 KOV 204 A 1 HETATM 29 C C16 KOV . . . E 3 14.012 6.179 8.081 1 16.87 ? C16 KOV 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #