data_4KOX # _model_server_result.job_id xViwaqPWTPd6CMHtWArV-Q _model_server_result.datetime_utc '2024-11-13 05:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4KOX # _exptl.entry_id 4KOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CEPHALOTHIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KOX _cell.length_a 58.194 _cell.length_b 76.17 _cell.length_c 39.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N2 O6 S2' _chem_comp.formula_weight 396.438 _chem_comp.id CLS _chem_comp.mon_nstd_flag . _chem_comp.name CEPHALOTHIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-ACETOXYMETHYL-8-OXO-7-(2-THIOPHEN-2-YL-ACETYLAMINO)-5-THIA-1-AZA-BICYCLO[4.2.0]OCT-2-ENE-2-CARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 CLS sing 70 n n S1 C6 CLS sing 71 n n C2 C3 CLS sing 72 n n C2 H21 CLS sing 73 n n C2 H22 CLS sing 74 n n C3 C3' CLS sing 75 n n C3 C4 CLS doub 76 n n C3' O20 CLS sing 77 n n C3' "H3'1" CLS sing 78 n n C3' "H3'2" CLS sing 79 n n O20 C21 CLS sing 80 n n C21 O22 CLS doub 81 n n C21 C23 CLS sing 82 n n C23 H231 CLS sing 83 n n C23 H232 CLS sing 84 n n C23 H233 CLS sing 85 n n C4 C4' CLS sing 86 n n C4 N5 CLS sing 87 n n C4' O4A CLS sing 88 n n C4' O4B CLS doub 89 n n O4A HO4 CLS sing 90 n n N5 C6 CLS sing 91 n n N5 C8 CLS sing 92 n n C6 C7 CLS sing 93 n n C6 H6 CLS sing 94 n n C7 C8 CLS sing 95 n n C7 N10 CLS sing 96 n n C7 H7 CLS sing 97 n n C8 O9 CLS doub 98 n n N10 C11 CLS sing 99 n n N10 H10 CLS sing 100 n n C11 O12 CLS doub 101 n n C11 C13 CLS sing 102 n n C13 C14 CLS sing 103 n n C13 H131 CLS sing 104 n n C13 H132 CLS sing 105 n n C14 C15 CLS doub 106 n y C14 S19 CLS sing 107 n y C15 C16 CLS sing 108 n y C15 H15 CLS sing 109 n n C16 C17 CLS doub 110 n y C16 H16 CLS sing 111 n n C17 S19 CLS sing 112 n y C17 H17 CLS sing 113 n n # _atom_sites.entry_id 4KOX _atom_sites.fract_transf_matrix[1][1] 0.017184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 2 SO4 A 1 204 4 SO4 SO4 . F 3 CLS A 1 205 1 CLS CE2 . G 4 EDO A 1 206 2 EDO EDO . H 4 EDO A 1 207 3 EDO EDO . I 4 EDO A 1 208 5 EDO EDO . J 4 EDO A 1 209 6 EDO EDO . K 4 EDO A 1 210 7 EDO EDO . L 4 EDO A 1 211 8 EDO EDO . M 4 EDO A 1 212 1 EDO EDO . N 4 EDO A 1 213 1 EDO EDO . O 5 HOH A 1 301 1 HOH HOH . O 5 HOH A 2 302 3 HOH HOH . O 5 HOH A 3 303 5 HOH HOH . O 5 HOH A 4 304 6 HOH HOH . O 5 HOH A 5 305 7 HOH HOH . O 5 HOH A 6 306 8 HOH HOH . O 5 HOH A 7 307 10 HOH HOH . O 5 HOH A 8 308 11 HOH HOH . O 5 HOH A 9 309 13 HOH HOH . O 5 HOH A 10 310 14 HOH HOH . O 5 HOH A 11 311 15 HOH HOH . O 5 HOH A 12 312 16 HOH HOH . O 5 HOH A 13 313 18 HOH HOH . O 5 HOH A 14 314 19 HOH HOH . O 5 HOH A 15 315 20 HOH HOH . O 5 HOH A 16 316 21 HOH HOH . O 5 HOH A 17 317 22 HOH HOH . O 5 HOH A 18 318 23 HOH HOH . O 5 HOH A 19 319 25 HOH HOH . O 5 HOH A 20 320 27 HOH HOH . O 5 HOH A 21 321 28 HOH HOH . O 5 HOH A 22 322 29 HOH HOH . O 5 HOH A 23 323 30 HOH HOH . O 5 HOH A 24 324 31 HOH HOH . O 5 HOH A 25 325 35 HOH HOH . O 5 HOH A 26 326 36 HOH HOH . O 5 HOH A 27 327 37 HOH HOH . O 5 HOH A 28 328 38 HOH HOH . O 5 HOH A 29 329 39 HOH HOH . O 5 HOH A 30 330 40 HOH HOH . O 5 HOH A 31 331 41 HOH HOH . O 5 HOH A 32 332 42 HOH HOH . O 5 HOH A 33 333 43 HOH HOH . O 5 HOH A 34 334 45 HOH HOH . O 5 HOH A 35 335 46 HOH HOH . O 5 HOH A 36 336 47 HOH HOH . O 5 HOH A 37 337 48 HOH HOH . O 5 HOH A 38 338 50 HOH HOH . O 5 HOH A 39 339 51 HOH HOH . O 5 HOH A 40 340 52 HOH HOH . O 5 HOH A 41 341 53 HOH HOH . O 5 HOH A 42 342 54 HOH HOH . O 5 HOH A 43 343 56 HOH HOH . O 5 HOH A 44 344 58 HOH HOH . O 5 HOH A 45 345 59 HOH HOH . O 5 HOH A 46 346 60 HOH HOH . O 5 HOH A 47 347 62 HOH HOH . O 5 HOH A 48 348 63 HOH HOH . O 5 HOH A 49 349 64 HOH HOH . O 5 HOH A 50 350 65 HOH HOH . O 5 HOH A 51 351 66 HOH HOH . O 5 HOH A 52 352 67 HOH HOH . O 5 HOH A 53 353 68 HOH HOH . O 5 HOH A 54 354 72 HOH HOH . O 5 HOH A 55 355 73 HOH HOH . O 5 HOH A 56 356 74 HOH HOH . O 5 HOH A 57 357 75 HOH HOH . O 5 HOH A 58 358 76 HOH HOH . O 5 HOH A 59 359 77 HOH HOH . O 5 HOH A 60 360 78 HOH HOH . O 5 HOH A 61 361 79 HOH HOH . O 5 HOH A 62 362 81 HOH HOH . O 5 HOH A 63 363 82 HOH HOH . O 5 HOH A 64 364 83 HOH HOH . O 5 HOH A 65 365 84 HOH HOH . O 5 HOH A 66 366 86 HOH HOH . O 5 HOH A 67 367 87 HOH HOH . O 5 HOH A 68 368 89 HOH HOH . O 5 HOH A 69 369 90 HOH HOH . O 5 HOH A 70 370 92 HOH HOH . O 5 HOH A 71 371 93 HOH HOH . O 5 HOH A 72 372 95 HOH HOH . O 5 HOH A 73 373 96 HOH HOH . O 5 HOH A 74 374 97 HOH HOH . O 5 HOH A 75 375 101 HOH HOH . O 5 HOH A 76 376 102 HOH HOH . O 5 HOH A 77 377 103 HOH HOH . O 5 HOH A 78 378 104 HOH HOH . O 5 HOH A 79 379 107 HOH HOH . O 5 HOH A 80 380 109 HOH HOH . O 5 HOH A 81 381 110 HOH HOH . O 5 HOH A 82 382 111 HOH HOH . O 5 HOH A 83 383 112 HOH HOH . O 5 HOH A 84 384 113 HOH HOH . O 5 HOH A 85 385 114 HOH HOH . O 5 HOH A 86 386 115 HOH HOH . O 5 HOH A 87 387 120 HOH HOH . O 5 HOH A 88 388 124 HOH HOH . O 5 HOH A 89 389 128 HOH HOH . O 5 HOH A 90 390 130 HOH HOH . O 5 HOH A 91 391 131 HOH HOH . O 5 HOH A 92 392 133 HOH HOH . O 5 HOH A 93 393 134 HOH HOH . O 5 HOH A 94 394 135 HOH HOH . O 5 HOH A 95 395 137 HOH HOH . O 5 HOH A 96 396 139 HOH HOH . O 5 HOH A 97 397 143 HOH HOH . O 5 HOH A 98 398 145 HOH HOH . O 5 HOH A 99 399 146 HOH HOH . O 5 HOH A 100 400 147 HOH HOH . O 5 HOH A 101 401 148 HOH HOH . O 5 HOH A 102 402 149 HOH HOH . O 5 HOH A 103 403 151 HOH HOH . O 5 HOH A 104 404 153 HOH HOH . O 5 HOH A 105 405 154 HOH HOH . O 5 HOH A 106 406 155 HOH HOH . O 5 HOH A 107 407 156 HOH HOH . O 5 HOH A 108 408 157 HOH HOH . O 5 HOH A 109 409 158 HOH HOH . O 5 HOH A 110 410 159 HOH HOH . O 5 HOH A 111 411 160 HOH HOH . O 5 HOH A 112 412 161 HOH HOH . O 5 HOH A 113 413 166 HOH HOH . O 5 HOH A 114 414 167 HOH HOH . O 5 HOH A 115 415 168 HOH HOH . O 5 HOH A 116 416 171 HOH HOH . O 5 HOH A 117 417 173 HOH HOH . O 5 HOH A 118 418 174 HOH HOH . O 5 HOH A 119 419 175 HOH HOH . O 5 HOH A 120 420 176 HOH HOH . O 5 HOH A 121 421 177 HOH HOH . O 5 HOH A 122 422 180 HOH HOH . O 5 HOH A 123 423 181 HOH HOH . O 5 HOH A 124 424 182 HOH HOH . O 5 HOH A 125 425 183 HOH HOH . O 5 HOH A 126 426 184 HOH HOH . O 5 HOH A 127 427 186 HOH HOH . O 5 HOH A 128 428 188 HOH HOH . O 5 HOH A 129 429 189 HOH HOH . O 5 HOH A 130 430 191 HOH HOH . O 5 HOH A 131 431 192 HOH HOH . O 5 HOH A 132 432 193 HOH HOH . O 5 HOH A 133 433 195 HOH HOH . O 5 HOH A 134 434 196 HOH HOH . O 5 HOH A 135 435 197 HOH HOH . O 5 HOH A 136 436 199 HOH HOH . O 5 HOH A 137 437 200 HOH HOH . O 5 HOH A 138 438 201 HOH HOH . O 5 HOH A 139 439 202 HOH HOH . O 5 HOH A 140 440 203 HOH HOH . O 5 HOH A 141 441 204 HOH HOH . O 5 HOH A 142 442 205 HOH HOH . O 5 HOH A 143 443 206 HOH HOH . O 5 HOH A 144 444 207 HOH HOH . O 5 HOH A 145 445 208 HOH HOH . O 5 HOH A 146 446 209 HOH HOH . O 5 HOH A 147 447 210 HOH HOH . O 5 HOH A 148 448 211 HOH HOH . O 5 HOH A 149 449 212 HOH HOH . O 5 HOH A 150 450 213 HOH HOH . O 5 HOH A 151 451 214 HOH HOH . O 5 HOH A 152 452 215 HOH HOH . O 5 HOH A 153 453 216 HOH HOH . O 5 HOH A 154 454 217 HOH HOH . O 5 HOH A 155 455 218 HOH HOH . O 5 HOH A 156 456 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CLS . A . F 3 -12.701 2.728 -10.443 0.5 27.64 ? S1 CLS 205 A 1 HETATM 2 S S1 CLS . B . F 3 -12.772 2.736 -10.394 0.5 23.15 ? S1 CLS 205 A 1 HETATM 3 C C2 CLS . A . F 3 -11.971 4.347 -10.683 0.5 26.09 ? C2 CLS 205 A 1 HETATM 4 C C2 CLS . B . F 3 -12.004 4.318 -10.704 0.5 21.51 ? C2 CLS 205 A 1 HETATM 5 C C3 CLS . A . F 3 -12.938 5.421 -11.118 0.5 25.18 ? C3 CLS 205 A 1 HETATM 6 C C3 CLS . B . F 3 -12.957 5.413 -11.139 0.5 20.83 ? C3 CLS 205 A 1 HETATM 7 C C3' CLS . A . F 3 -12.307 6.567 -11.832 0.5 25.96 ? C3' CLS 205 A 1 HETATM 8 C C3' CLS . B . F 3 -12.3 6.552 -11.837 0.5 21.77 ? C3' CLS 205 A 1 HETATM 9 O O20 CLS . A . F 3 -11.382 7.228 -10.835 0.5 31.28 ? O20 CLS 205 A 1 HETATM 10 O O20 CLS . B . F 3 -11.424 7.242 -10.807 0.5 26.95 ? O20 CLS 205 A 1 HETATM 11 C C21 CLS . A . F 3 -10.961 8.586 -11.084 0.5 34.81 ? C21 CLS 205 A 1 HETATM 12 C C21 CLS . B . F 3 -10.993 8.595 -11.059 0.5 30.79 ? C21 CLS 205 A 1 HETATM 13 O O22 CLS . A . F 3 -11.264 9.174 -12.096 0.5 31.56 ? O22 CLS 205 A 1 HETATM 14 O O22 CLS . B . F 3 -11.285 9.183 -12.072 0.5 27.98 ? O22 CLS 205 A 1 HETATM 15 C C23 CLS . A . F 3 -10.14 9.141 -9.969 0.5 35.04 ? C23 CLS 205 A 1 HETATM 16 C C23 CLS . B . F 3 -10.176 9.149 -9.942 0.5 31.16 ? C23 CLS 205 A 1 HETATM 17 C C4 CLS . A . F 3 -14.248 5.401 -10.883 0.5 25.31 ? C4 CLS 205 A 1 HETATM 18 C C4 CLS . B . F 3 -14.272 5.427 -10.917 0.5 20.64 ? C4 CLS 205 A 1 HETATM 19 C C4' CLS . A . F 3 -15.262 6.371 -11.444 0.5 23.13 ? C4' CLS 205 A 1 HETATM 20 C C4' CLS . B . F 3 -15.263 6.42 -11.465 0.5 19.03 ? C4' CLS 205 A 1 HETATM 21 O O4A CLS . A . F 3 -15.219 7.559 -11.096 0.5 22.23 ? O4A CLS 205 A 1 HETATM 22 O O4A CLS . B . F 3 -15.21 7.596 -11.103 0.5 19.34 ? O4A CLS 205 A 1 HETATM 23 O O4B CLS . A . F 3 -16.146 5.918 -12.216 0.5 23.73 ? O4B CLS 205 A 1 HETATM 24 O O4B CLS . B . F 3 -16.159 5.978 -12.223 0.5 20.59 ? O4B CLS 205 A 1 HETATM 25 N N5 CLS . A . F 3 -14.757 4.355 -10.071 0.5 28.32 ? N5 CLS 205 A 1 HETATM 26 N N5 CLS . B . F 3 -14.822 4.394 -10.129 0.5 21.87 ? N5 CLS 205 A 1 HETATM 27 C C6 CLS . A . F 3 -13.977 3.344 -9.353 0.5 30.47 ? C6 CLS 205 A 1 HETATM 28 C C6 CLS . B . F 3 -14.029 3.459 -9.33 0.5 23.8 ? C6 CLS 205 A 1 HETATM 29 C C7 CLS . A . F 3 -15.312 2.539 -9.178 0.5 33.45 ? C7 CLS 205 A 1 HETATM 30 C C7 CLS . B . F 3 -15.361 2.688 -9.051 0.5 25.24 ? C7 CLS 205 A 1 HETATM 31 C C8 CLS . A . F 3 -15.975 3.844 -9.706 0.5 31.76 ? C8 CLS 205 A 1 HETATM 32 C C8 CLS . B . F 3 -16.047 3.825 -9.836 0.5 23.49 ? C8 CLS 205 A 1 HETATM 33 O O9 CLS . A . F 3 -17.087 4.299 -9.83 0.5 34.58 ? O9 CLS 205 A 1 HETATM 34 O O9 CLS . B . F 3 -17.193 4.117 -10.107 0.5 24.57 ? O9 CLS 205 A 1 HETATM 35 N N10 CLS . A . F 3 -15.701 1.372 -9.98 0.5 38.99 ? N10 CLS 205 A 1 HETATM 36 N N10 CLS . B . F 3 -15.548 1.324 -9.514 0.5 27.51 ? N10 CLS 205 A 1 HETATM 37 C C11 CLS . A . F 3 -15.325 0.073 -9.838 0.5 42.13 ? C11 CLS 205 A 1 HETATM 38 C C11 CLS . B . F 3 -16.152 0.956 -10.701 0.5 31.86 ? C11 CLS 205 A 1 HETATM 39 O O12 CLS . A . F 3 -14.454 -0.303 -9.048 0.5 40.71 ? O12 CLS 205 A 1 HETATM 40 O O12 CLS . B . F 3 -16.657 1.735 -11.509 0.5 33.12 ? O12 CLS 205 A 1 HETATM 41 C C13 CLS . A . F 3 -16.156 -0.927 -10.652 0.5 43.25 ? C13 CLS 205 A 1 HETATM 42 C C13 CLS . B . F 3 -16.215 -0.52 -10.946 0.5 35.63 ? C13 CLS 205 A 1 HETATM 43 C C14 CLS . A . F 3 -15.557 -1.499 -11.934 0.5 42.31 ? C14 CLS 205 A 1 HETATM 44 C C14 CLS . B . F 3 -15.439 -1.014 -12.14 0.5 35.64 ? C14 CLS 205 A 1 HETATM 45 C C15 CLS . A . F 3 -16.124 -2.477 -12.79 0.5 39.58 ? C15 CLS 205 A 1 HETATM 46 C C15 CLS . B . F 3 -14.044 -1.085 -12.268 0.5 34.59 ? C15 CLS 205 A 1 HETATM 47 C C16 CLS . A . F 3 -15.268 -2.786 -13.891 0.5 40.74 ? C16 CLS 205 A 1 HETATM 48 C C16 CLS . B . F 3 -13.67 -1.667 -13.521 0.5 32.38 ? C16 CLS 205 A 1 HETATM 49 C C17 CLS . A . F 3 -14.126 -2.093 -13.821 0.5 37.68 ? C17 CLS 205 A 1 HETATM 50 C C17 CLS . B . F 3 -14.729 -2.006 -14.259 0.5 38.39 ? C17 CLS 205 A 1 HETATM 51 S S19 CLS . A . F 3 -14.027 -1.05 -12.475 0.5 37.56 ? S19 CLS 205 A 1 HETATM 52 S S19 CLS . B . F 3 -16.21 -1.656 -13.492 0.5 42.5 ? S19 CLS 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #