data_4KP6 # _model_server_result.job_id tZ5530gR24Vv4jVvZNU_WQ _model_server_result.datetime_utc '2024-11-14 17:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":517}' # _entry.id 4KP6 # _exptl.entry_id 4KP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KP6 _cell.length_a 53.332 _cell.length_b 53.332 _cell.length_c 229.048 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 238 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A NE2 HIS 127 A HIS 274 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 A OD1 ASP 128 A ASP 275 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A OD2 ASP 128 A ASP 275 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 A OD1 ASP 245 A ASP 392 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 C MG MG . A MG 502 1_555 X O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc7 C MG MG . A MG 502 1_555 X O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 C MG MG . A MG 502 1_555 X O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc9 C MG MG . A MG 502 1_555 X O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 C MG MG . A MG 502 1_555 X O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc11 D ZN ZN . A ZN 503 1_555 X O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc12 D ZN ZN . A ZN 503 1_555 X O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 122 n n C1 C2 EDO sing 123 n n C1 H11 EDO sing 124 n n C1 H12 EDO sing 125 n n O1 HO1 EDO sing 126 n n C2 O2 EDO sing 127 n n C2 H21 EDO sing 128 n n C2 H22 EDO sing 129 n n O2 HO2 EDO sing 130 n n # _atom_sites.entry_id 4KP6 _atom_sites.fract_transf_matrix[1][1] 0.01875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1S1 A 1 501 1 1S1 1S1 . C 3 MG A 1 502 1 MG MG . D 4 ZN A 1 503 2 ZN ZN . E 5 EDO A 1 504 3 EDO EDO . F 5 EDO A 1 505 4 EDO EDO . G 5 EDO A 1 506 5 EDO EDO . H 5 EDO A 1 507 6 EDO EDO . I 5 EDO A 1 508 7 EDO EDO . J 5 EDO A 1 509 8 EDO EDO . K 5 EDO A 1 510 9 EDO EDO . L 5 EDO A 1 511 10 EDO EDO . M 5 EDO A 1 512 11 EDO EDO . N 5 EDO A 1 513 12 EDO EDO . O 5 EDO A 1 514 13 EDO EDO . P 5 EDO A 1 515 14 EDO EDO . Q 5 EDO A 1 516 15 EDO EDO . R 5 EDO A 1 517 16 EDO EDO . S 5 EDO A 1 518 17 EDO EDO . T 5 EDO A 1 519 18 EDO EDO . U 5 EDO A 1 520 19 EDO EDO . V 5 EDO A 1 521 20 EDO EDO . W 5 EDO A 1 522 21 EDO EDO . X 6 HOH A 1 601 1 HOH HOH . X 6 HOH A 2 602 2 HOH HOH . X 6 HOH A 3 603 3 HOH HOH . X 6 HOH A 4 604 4 HOH HOH . X 6 HOH A 5 605 5 HOH HOH . X 6 HOH A 6 606 6 HOH HOH . X 6 HOH A 7 607 7 HOH HOH . X 6 HOH A 8 608 8 HOH HOH . X 6 HOH A 9 609 9 HOH HOH . X 6 HOH A 10 610 10 HOH HOH . X 6 HOH A 11 611 11 HOH HOH . X 6 HOH A 12 612 12 HOH HOH . X 6 HOH A 13 613 13 HOH HOH . X 6 HOH A 14 614 14 HOH HOH . X 6 HOH A 15 615 15 HOH HOH . X 6 HOH A 16 616 16 HOH HOH . X 6 HOH A 17 617 17 HOH HOH . X 6 HOH A 18 618 18 HOH HOH . X 6 HOH A 19 619 19 HOH HOH . X 6 HOH A 20 620 20 HOH HOH . X 6 HOH A 21 621 21 HOH HOH . X 6 HOH A 22 622 22 HOH HOH . X 6 HOH A 23 623 23 HOH HOH . X 6 HOH A 24 624 24 HOH HOH . X 6 HOH A 25 625 25 HOH HOH . X 6 HOH A 26 626 26 HOH HOH . X 6 HOH A 27 627 27 HOH HOH . X 6 HOH A 28 628 28 HOH HOH . X 6 HOH A 29 629 29 HOH HOH . X 6 HOH A 30 630 30 HOH HOH . X 6 HOH A 31 631 31 HOH HOH . X 6 HOH A 32 632 32 HOH HOH . X 6 HOH A 33 633 33 HOH HOH . X 6 HOH A 34 634 34 HOH HOH . X 6 HOH A 35 635 35 HOH HOH . X 6 HOH A 36 636 36 HOH HOH . X 6 HOH A 37 637 37 HOH HOH . X 6 HOH A 38 638 38 HOH HOH . X 6 HOH A 39 639 39 HOH HOH . X 6 HOH A 40 640 40 HOH HOH . X 6 HOH A 41 641 41 HOH HOH . X 6 HOH A 42 642 42 HOH HOH . X 6 HOH A 43 643 43 HOH HOH . X 6 HOH A 44 644 44 HOH HOH . X 6 HOH A 45 645 45 HOH HOH . X 6 HOH A 46 646 46 HOH HOH . X 6 HOH A 47 647 47 HOH HOH . X 6 HOH A 48 648 48 HOH HOH . X 6 HOH A 49 649 49 HOH HOH . X 6 HOH A 50 650 50 HOH HOH . X 6 HOH A 51 651 51 HOH HOH . X 6 HOH A 52 652 52 HOH HOH . X 6 HOH A 53 653 53 HOH HOH . X 6 HOH A 54 654 54 HOH HOH . X 6 HOH A 55 655 55 HOH HOH . X 6 HOH A 56 656 56 HOH HOH . X 6 HOH A 57 657 57 HOH HOH . X 6 HOH A 58 658 58 HOH HOH . X 6 HOH A 59 659 59 HOH HOH . X 6 HOH A 60 660 60 HOH HOH . X 6 HOH A 61 661 61 HOH HOH . X 6 HOH A 62 662 62 HOH HOH . X 6 HOH A 63 663 63 HOH HOH . X 6 HOH A 64 664 64 HOH HOH . X 6 HOH A 65 665 65 HOH HOH . X 6 HOH A 66 666 66 HOH HOH . X 6 HOH A 67 667 67 HOH HOH . X 6 HOH A 68 668 68 HOH HOH . X 6 HOH A 69 669 69 HOH HOH . X 6 HOH A 70 670 70 HOH HOH . X 6 HOH A 71 671 71 HOH HOH . X 6 HOH A 72 672 72 HOH HOH . X 6 HOH A 73 673 73 HOH HOH . X 6 HOH A 74 674 74 HOH HOH . X 6 HOH A 75 675 75 HOH HOH . X 6 HOH A 76 676 76 HOH HOH . X 6 HOH A 77 677 77 HOH HOH . X 6 HOH A 78 678 78 HOH HOH . X 6 HOH A 79 679 79 HOH HOH . X 6 HOH A 80 680 80 HOH HOH . X 6 HOH A 81 681 81 HOH HOH . X 6 HOH A 82 682 82 HOH HOH . X 6 HOH A 83 683 83 HOH HOH . X 6 HOH A 84 684 84 HOH HOH . X 6 HOH A 85 685 85 HOH HOH . X 6 HOH A 86 686 86 HOH HOH . X 6 HOH A 87 687 87 HOH HOH . X 6 HOH A 88 688 88 HOH HOH . X 6 HOH A 89 689 89 HOH HOH . X 6 HOH A 90 690 90 HOH HOH . X 6 HOH A 91 691 91 HOH HOH . X 6 HOH A 92 692 92 HOH HOH . X 6 HOH A 93 693 93 HOH HOH . X 6 HOH A 94 694 94 HOH HOH . X 6 HOH A 95 695 95 HOH HOH . X 6 HOH A 96 696 96 HOH HOH . X 6 HOH A 97 697 97 HOH HOH . X 6 HOH A 98 698 98 HOH HOH . X 6 HOH A 99 699 99 HOH HOH . X 6 HOH A 100 700 100 HOH HOH . X 6 HOH A 101 701 101 HOH HOH . X 6 HOH A 102 702 102 HOH HOH . X 6 HOH A 103 703 103 HOH HOH . X 6 HOH A 104 704 104 HOH HOH . X 6 HOH A 105 705 105 HOH HOH . X 6 HOH A 106 706 106 HOH HOH . X 6 HOH A 107 707 107 HOH HOH . X 6 HOH A 108 708 108 HOH HOH . X 6 HOH A 109 709 109 HOH HOH . X 6 HOH A 110 710 110 HOH HOH . X 6 HOH A 111 711 111 HOH HOH . X 6 HOH A 112 712 112 HOH HOH . X 6 HOH A 113 713 113 HOH HOH . X 6 HOH A 114 714 114 HOH HOH . X 6 HOH A 115 715 115 HOH HOH . X 6 HOH A 116 716 116 HOH HOH . X 6 HOH A 117 717 117 HOH HOH . X 6 HOH A 118 718 118 HOH HOH . X 6 HOH A 119 719 119 HOH HOH . X 6 HOH A 120 720 120 HOH HOH . X 6 HOH A 121 721 121 HOH HOH . X 6 HOH A 122 722 122 HOH HOH . X 6 HOH A 123 723 123 HOH HOH . X 6 HOH A 124 724 124 HOH HOH . X 6 HOH A 125 725 125 HOH HOH . X 6 HOH A 126 726 126 HOH HOH . X 6 HOH A 127 727 127 HOH HOH . X 6 HOH A 128 728 128 HOH HOH . X 6 HOH A 129 729 129 HOH HOH . X 6 HOH A 130 730 130 HOH HOH . X 6 HOH A 131 731 131 HOH HOH . X 6 HOH A 132 732 132 HOH HOH . X 6 HOH A 133 733 133 HOH HOH . X 6 HOH A 134 734 134 HOH HOH . X 6 HOH A 135 735 135 HOH HOH . X 6 HOH A 136 736 136 HOH HOH . X 6 HOH A 137 737 137 HOH HOH . X 6 HOH A 138 738 138 HOH HOH . X 6 HOH A 139 739 139 HOH HOH . X 6 HOH A 140 740 140 HOH HOH . X 6 HOH A 141 741 141 HOH HOH . X 6 HOH A 142 742 142 HOH HOH . X 6 HOH A 143 743 143 HOH HOH . X 6 HOH A 144 744 144 HOH HOH . X 6 HOH A 145 745 145 HOH HOH . X 6 HOH A 146 746 146 HOH HOH . X 6 HOH A 147 747 147 HOH HOH . X 6 HOH A 148 748 148 HOH HOH . X 6 HOH A 149 749 149 HOH HOH . X 6 HOH A 150 750 150 HOH HOH . X 6 HOH A 151 751 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 5 -43.551 93.614 142.041 1 27.13 ? C1 EDO 517 A 1 HETATM 2 O O1 EDO . . . R 5 -44.274 93.175 143.196 1 25.56 ? O1 EDO 517 A 1 HETATM 3 C C2 EDO . . . R 5 -42.527 94.673 142.425 1 34.58 ? C2 EDO 517 A 1 HETATM 4 O O2 EDO . . . R 5 -42.012 94.356 143.717 1 36.83 ? O2 EDO 517 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #