data_4KPD
#
_model_server_result.job_id            gGAMWGLeoR-t1WNo4wDzIA 
_model_server_result.datetime_utc      '2024-11-28 21:21:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4KPD 
#
_exptl.entry_id    4KPD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KPD 
_cell.length_a            111.73 
_cell.length_b            111.73 
_cell.length_c            66.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -33.495 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 125 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A OD1 ASP 125 A ASP 103 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 F O15 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc7 B MG MG . A MG 401 1_555 F O12 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc8 B MG MG . A MG 401 1_555 G O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc9 B MG MG . A MG 401 1_555 G O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc10 B MG MG . A MG 401 1_555 G O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc11 C MG MG . A MG 402 1_555 F O16 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc12 C MG MG . A MG 402 1_555 F O11 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc13 C MG MG . A MG 402 1_555 G O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc14 C MG MG . A MG 402 1_555 G O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc15 C MG MG . A MG 402 1_555 G O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc16 D MG MG . A MG 403 1_555 F O15 RIS . A RIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc17 D MG MG . A MG 403 1_555 G O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc18 D MG MG . A MG 403 1_555 G O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc19 D MG MG . A MG 403 1_555 G O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4KPD 
_atom_sites.fract_transf_matrix[1][1]    0.00895 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 907 MG MG . 
C 2 MG A 1 402 908 MG MG . 
D 2 MG A 1 403 909 MG MG . 
E 3 IPE A 1 404 900 IPE IPE . 
F 4 RIS A 1 405 901 RIS RIS . 
G 5 HOH A 1 501 10 HOH HOH . 
G 5 HOH A 2 502 11 HOH HOH . 
G 5 HOH A 3 503 13 HOH HOH . 
G 5 HOH A 4 504 14 HOH HOH . 
G 5 HOH A 5 505 15 HOH HOH . 
G 5 HOH A 6 506 16 HOH HOH . 
G 5 HOH A 7 507 17 HOH HOH . 
G 5 HOH A 8 508 19 HOH HOH . 
G 5 HOH A 9 509 20 HOH HOH . 
G 5 HOH A 10 510 24 HOH HOH . 
G 5 HOH A 11 511 25 HOH HOH . 
G 5 HOH A 12 512 26 HOH HOH . 
G 5 HOH A 13 513 27 HOH HOH . 
G 5 HOH A 14 514 28 HOH HOH . 
G 5 HOH A 15 515 29 HOH HOH . 
G 5 HOH A 16 516 30 HOH HOH . 
G 5 HOH A 17 517 31 HOH HOH . 
G 5 HOH A 18 518 32 HOH HOH . 
G 5 HOH A 19 519 36 HOH HOH . 
G 5 HOH A 20 520 37 HOH HOH . 
G 5 HOH A 21 521 39 HOH HOH . 
G 5 HOH A 22 522 40 HOH HOH . 
G 5 HOH A 23 523 41 HOH HOH . 
G 5 HOH A 24 524 43 HOH HOH . 
G 5 HOH A 25 525 45 HOH HOH . 
G 5 HOH A 26 526 47 HOH HOH . 
G 5 HOH A 27 527 49 HOH HOH . 
G 5 HOH A 28 528 50 HOH HOH . 
G 5 HOH A 29 529 51 HOH HOH . 
G 5 HOH A 30 530 52 HOH HOH . 
G 5 HOH A 31 531 53 HOH HOH . 
G 5 HOH A 32 532 55 HOH HOH . 
G 5 HOH A 33 533 57 HOH HOH . 
G 5 HOH A 34 534 58 HOH HOH . 
G 5 HOH A 35 535 59 HOH HOH . 
G 5 HOH A 36 536 60 HOH HOH . 
G 5 HOH A 37 537 61 HOH HOH . 
G 5 HOH A 38 538 62 HOH HOH . 
G 5 HOH A 39 539 66 HOH HOH . 
G 5 HOH A 40 540 72 HOH HOH . 
G 5 HOH A 41 541 73 HOH HOH . 
G 5 HOH A 42 542 75 HOH HOH . 
G 5 HOH A 43 543 77 HOH HOH . 
G 5 HOH A 44 544 79 HOH HOH . 
G 5 HOH A 45 545 80 HOH HOH . 
G 5 HOH A 46 546 81 HOH HOH . 
G 5 HOH A 47 547 82 HOH HOH . 
G 5 HOH A 48 548 83 HOH HOH . 
G 5 HOH A 49 549 86 HOH HOH . 
G 5 HOH A 50 550 87 HOH HOH . 
G 5 HOH A 51 551 88 HOH HOH . 
G 5 HOH A 52 552 91 HOH HOH . 
G 5 HOH A 53 553 93 HOH HOH . 
G 5 HOH A 54 554 99 HOH HOH . 
G 5 HOH A 55 555 100 HOH HOH . 
G 5 HOH A 56 556 101 HOH HOH . 
G 5 HOH A 57 557 104 HOH HOH . 
G 5 HOH A 58 558 106 HOH HOH . 
G 5 HOH A 59 559 107 HOH HOH . 
G 5 HOH A 60 560 108 HOH HOH . 
G 5 HOH A 61 561 112 HOH HOH . 
G 5 HOH A 62 562 114 HOH HOH . 
G 5 HOH A 63 563 115 HOH HOH . 
G 5 HOH A 64 564 116 HOH HOH . 
G 5 HOH A 65 565 117 HOH HOH . 
G 5 HOH A 66 566 119 HOH HOH . 
G 5 HOH A 67 567 122 HOH HOH . 
G 5 HOH A 68 568 123 HOH HOH . 
G 5 HOH A 69 569 124 HOH HOH . 
G 5 HOH A 70 570 127 HOH HOH . 
G 5 HOH A 71 571 129 HOH HOH . 
G 5 HOH A 72 572 130 HOH HOH . 
G 5 HOH A 73 573 132 HOH HOH . 
G 5 HOH A 74 574 133 HOH HOH . 
G 5 HOH A 75 575 134 HOH HOH . 
G 5 HOH A 76 576 135 HOH HOH . 
G 5 HOH A 77 577 136 HOH HOH . 
G 5 HOH A 78 578 137 HOH HOH . 
G 5 HOH A 79 579 138 HOH HOH . 
G 5 HOH A 80 580 139 HOH HOH . 
G 5 HOH A 81 581 140 HOH HOH . 
G 5 HOH A 82 582 141 HOH HOH . 
G 5 HOH A 83 583 142 HOH HOH . 
G 5 HOH A 84 584 143 HOH HOH . 
G 5 HOH A 85 585 144 HOH HOH . 
G 5 HOH A 86 586 145 HOH HOH . 
G 5 HOH A 87 587 146 HOH HOH . 
G 5 HOH A 88 588 147 HOH HOH . 
G 5 HOH A 89 589 148 HOH HOH . 
G 5 HOH A 90 590 149 HOH HOH . 
G 5 HOH A 91 591 150 HOH HOH . 
G 5 HOH A 92 592 151 HOH HOH . 
G 5 HOH A 93 593 152 HOH HOH . 
G 5 HOH A 94 594 154 HOH HOH . 
G 5 HOH A 95 595 155 HOH HOH . 
G 5 HOH A 96 596 156 HOH HOH . 
G 5 HOH A 97 597 157 HOH HOH . 
G 5 HOH A 98 598 158 HOH HOH . 
G 5 HOH A 99 599 159 HOH HOH . 
G 5 HOH A 100 600 161 HOH HOH . 
G 5 HOH A 101 601 163 HOH HOH . 
G 5 HOH A 102 602 166 HOH HOH . 
G 5 HOH A 103 603 168 HOH HOH . 
G 5 HOH A 104 604 171 HOH HOH . 
G 5 HOH A 105 605 173 HOH HOH . 
G 5 HOH A 106 606 174 HOH HOH . 
G 5 HOH A 107 607 175 HOH HOH . 
G 5 HOH A 108 608 176 HOH HOH . 
G 5 HOH A 109 609 178 HOH HOH . 
G 5 HOH A 110 610 179 HOH HOH . 
G 5 HOH A 111 611 181 HOH HOH . 
G 5 HOH A 112 612 182 HOH HOH . 
G 5 HOH A 113 613 183 HOH HOH . 
G 5 HOH A 114 614 184 HOH HOH . 
G 5 HOH A 115 615 185 HOH HOH . 
G 5 HOH A 116 616 186 HOH HOH . 
G 5 HOH A 117 617 188 HOH HOH . 
G 5 HOH A 118 618 189 HOH HOH . 
G 5 HOH A 119 619 190 HOH HOH . 
G 5 HOH A 120 620 191 HOH HOH . 
G 5 HOH A 121 621 192 HOH HOH . 
G 5 HOH A 122 622 193 HOH HOH . 
G 5 HOH A 123 623 194 HOH HOH . 
G 5 HOH A 124 624 195 HOH HOH . 
G 5 HOH A 125 625 196 HOH HOH . 
G 5 HOH A 126 626 197 HOH HOH . 
G 5 HOH A 127 627 198 HOH HOH . 
G 5 HOH A 128 628 199 HOH HOH . 
G 5 HOH A 129 629 200 HOH HOH . 
G 5 HOH A 130 630 201 HOH HOH . 
G 5 HOH A 131 631 202 HOH HOH . 
G 5 HOH A 132 632 203 HOH HOH . 
G 5 HOH A 133 633 204 HOH HOH . 
G 5 HOH A 134 634 205 HOH HOH . 
G 5 HOH A 135 635 206 HOH HOH . 
G 5 HOH A 136 636 207 HOH HOH . 
G 5 HOH A 137 637 208 HOH HOH . 
G 5 HOH A 138 638 209 HOH HOH . 
G 5 HOH A 139 639 210 HOH HOH . 
G 5 HOH A 140 640 211 HOH HOH . 
G 5 HOH A 141 641 212 HOH HOH . 
G 5 HOH A 142 642 213 HOH HOH . 
G 5 HOH A 143 643 214 HOH HOH . 
G 5 HOH A 144 644 215 HOH HOH . 
G 5 HOH A 145 645 216 HOH HOH . 
G 5 HOH A 146 646 217 HOH HOH . 
G 5 HOH A 147 647 218 HOH HOH . 
G 5 HOH A 148 648 219 HOH HOH . 
G 5 HOH A 149 649 220 HOH HOH . 
G 5 HOH A 150 650 221 HOH HOH . 
G 5 HOH A 151 651 222 HOH HOH . 
G 5 HOH A 152 652 223 HOH HOH . 
G 5 HOH A 153 653 224 HOH HOH . 
G 5 HOH A 154 654 225 HOH HOH . 
G 5 HOH A 155 655 226 HOH HOH . 
G 5 HOH A 156 656 227 HOH HOH . 
G 5 HOH A 157 657 228 HOH HOH . 
G 5 HOH A 158 658 229 HOH HOH . 
G 5 HOH A 159 659 230 HOH HOH . 
G 5 HOH A 160 660 231 HOH HOH . 
G 5 HOH A 161 661 232 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               18.628 
_atom_site.Cartn_y               -34.85 
_atom_site.Cartn_z               -9.542 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.74 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#