data_4KPP
#
_model_server_result.job_id            H3I6gAbmqojubGlVIA3Bbg 
_model_server_result.datetime_utc      '2024-11-04 22:38:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kpp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    4KPP 
#
_exptl.entry_id    4KPP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.37 
_cell.angle_gamma         90 
_cell.entry_id            4KPP 
_cell.length_a            63.954 
_cell.length_b            97.386 
_cell.length_c            71.233 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KPP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1 
B,C,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   GLC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C GLC 1 C 1 GLC E 101 MAL 
2 n C GLC 2 C 2 GLC E 101 MAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing 
metalc ? metalc1 A O ILE 330 A ILE 330 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc2 A OD1 ASP 333 A ASP 333 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc3 A OD2 ASP 333 A ASP 333 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 A O LYS 335 A LYS 335 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc5 A OE1 GLU 340 A GLU 340 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 A OE2 GLU 340 A GLU 340 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc7 B O ILE 330 B ILE 330 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc8 B OD1 ASP 333 B ASP 333 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc9 B O LYS 335 B LYS 335 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc10 B OE2 GLU 340 B GLU 340 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc11 B OE1 GLU 340 B GLU 340 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4KPP 
_atom_sites.fract_transf_matrix[1][1]    0.015636 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00258 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CA A 1 501 400 CA CA . 
E 4 OLB A 1 502 2 OLB OLC . 
F 5 OLA A 1 503 8 OLA OLA . 
G 3 CA B 1 501 400 CA CA . 
H 5 OLA B 1 502 1 OLA OLA . 
I 5 OLA B 1 503 3 OLA OLA . 
J 5 OLA B 1 504 9 OLA OLA . 
K 5 OLA B 1 505 10 OLA OLA . 
L 6 HOH A 1 601 13 HOH HOH . 
L 6 HOH A 2 602 14 HOH HOH . 
L 6 HOH A 3 603 15 HOH HOH . 
L 6 HOH A 4 604 16 HOH HOH . 
L 6 HOH A 5 605 17 HOH HOH . 
L 6 HOH A 6 606 18 HOH HOH . 
L 6 HOH A 7 607 19 HOH HOH . 
L 6 HOH A 8 608 20 HOH HOH . 
L 6 HOH A 9 609 21 HOH HOH . 
L 6 HOH A 10 610 23 HOH HOH . 
L 6 HOH A 11 611 24 HOH HOH . 
L 6 HOH A 12 612 26 HOH HOH . 
L 6 HOH A 13 613 33 HOH HOH . 
L 6 HOH A 14 614 43 HOH HOH . 
L 6 HOH A 15 615 48 HOH HOH . 
L 6 HOH A 16 616 49 HOH HOH . 
L 6 HOH A 17 617 50 HOH HOH . 
L 6 HOH A 18 618 55 HOH HOH . 
L 6 HOH A 19 619 57 HOH HOH . 
L 6 HOH A 20 620 66 HOH HOH . 
L 6 HOH A 21 621 77 HOH HOH . 
L 6 HOH A 22 622 79 HOH HOH . 
L 6 HOH A 23 623 86 HOH HOH . 
L 6 HOH A 24 624 140 HOH HOH . 
L 6 HOH A 25 625 141 HOH HOH . 
L 6 HOH A 26 626 155 HOH HOH . 
L 6 HOH A 27 627 157 HOH HOH . 
L 6 HOH A 28 628 158 HOH HOH . 
L 6 HOH A 29 629 159 HOH HOH . 
M 6 HOH B 1 601 1 HOH HOH . 
M 6 HOH B 2 602 2 HOH HOH . 
M 6 HOH B 3 603 3 HOH HOH . 
M 6 HOH B 4 604 4 HOH HOH . 
M 6 HOH B 5 605 5 HOH HOH . 
M 6 HOH B 6 606 6 HOH HOH . 
M 6 HOH B 7 607 7 HOH HOH . 
M 6 HOH B 8 608 8 HOH HOH . 
M 6 HOH B 9 609 9 HOH HOH . 
M 6 HOH B 10 610 10 HOH HOH . 
M 6 HOH B 11 611 11 HOH HOH . 
M 6 HOH B 12 612 12 HOH HOH . 
M 6 HOH B 13 613 25 HOH HOH . 
M 6 HOH B 14 614 28 HOH HOH . 
M 6 HOH B 15 615 29 HOH HOH . 
M 6 HOH B 16 616 30 HOH HOH . 
M 6 HOH B 17 617 31 HOH HOH . 
M 6 HOH B 18 618 34 HOH HOH . 
M 6 HOH B 19 619 35 HOH HOH . 
M 6 HOH B 20 620 36 HOH HOH . 
M 6 HOH B 21 621 37 HOH HOH . 
M 6 HOH B 22 622 38 HOH HOH . 
M 6 HOH B 23 623 40 HOH HOH . 
M 6 HOH B 24 624 42 HOH HOH . 
M 6 HOH B 25 625 45 HOH HOH . 
M 6 HOH B 26 626 46 HOH HOH . 
M 6 HOH B 27 627 52 HOH HOH . 
M 6 HOH B 28 628 61 HOH HOH . 
M 6 HOH B 29 629 62 HOH HOH . 
M 6 HOH B 30 630 73 HOH HOH . 
M 6 HOH B 31 631 83 HOH HOH . 
M 6 HOH B 32 632 90 HOH HOH . 
M 6 HOH B 33 633 107 HOH HOH . 
M 6 HOH B 34 634 108 HOH HOH . 
M 6 HOH B 35 635 122 HOH HOH . 
M 6 HOH B 36 636 127 HOH HOH . 
M 6 HOH B 37 637 131 HOH HOH . 
M 6 HOH B 38 638 134 HOH HOH . 
M 6 HOH B 39 639 135 HOH HOH . 
M 6 HOH B 40 640 139 HOH HOH . 
M 6 HOH B 41 641 142 HOH HOH . 
M 6 HOH B 42 642 143 HOH HOH . 
M 6 HOH B 43 643 144 HOH HOH . 
M 6 HOH B 44 644 145 HOH HOH . 
M 6 HOH B 45 645 149 HOH HOH . 
M 6 HOH B 46 646 150 HOH HOH . 
M 6 HOH B 47 647 151 HOH HOH . 
M 6 HOH B 48 648 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               38.092 
_atom_site.Cartn_y               35.988 
_atom_site.Cartn_z               129.021 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        61.05 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#