data_4KPP # _model_server_result.job_id 5AeC48VXB1pcFO2Nq2PONw _model_server_result.datetime_utc '2024-11-23 00:12:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 4KPP # _exptl.entry_id 4KPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.37 _cell.angle_gamma 90 _cell.entry_id 4KPP _cell.length_a 63.954 _cell.length_b 97.386 _cell.length_c 71.233 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1 B,C,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC E 101 MAL 2 n C GLC 2 C 2 GLC E 101 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing metalc ? metalc1 A O ILE 330 A ILE 330 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A OD1 ASP 333 A ASP 333 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 A OD2 ASP 333 A ASP 333 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 A O LYS 335 A LYS 335 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc5 A OE1 GLU 340 A GLU 340 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 A OE2 GLU 340 A GLU 340 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc7 B O ILE 330 B ILE 330 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 B OD1 ASP 333 B ASP 333 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc9 B O LYS 335 B LYS 335 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc10 B OE2 GLU 340 B GLU 340 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc11 B OE1 GLU 340 B GLU 340 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 314 n n C1 O20 OLB sing 315 n n C2 C1 OLB sing 316 n n C3 C2 OLB sing 317 n n C4 C3 OLB sing 318 n n C5 C4 OLB sing 319 n n C5 C6 OLB sing 320 n n O20 C21 OLB sing 321 n n C21 C22 OLB sing 322 n n C22 C24 OLB sing 323 n n O23 C22 OLB sing 324 n n C24 O25 OLB sing 325 n n C6 C7 OLB sing 326 n n C7 C8 OLB sing 327 n n C8 C9 OLB sing 328 n n C9 C10 OLB doub 329 z n C10 C11 OLB sing 330 n n C2 H2 OLB sing 331 n n C2 H2A OLB sing 332 n n C3 H3 OLB sing 333 n n C3 H3A OLB sing 334 n n C4 H4 OLB sing 335 n n C4 H4A OLB sing 336 n n C5 H5 OLB sing 337 n n C5 H5A OLB sing 338 n n C21 H21 OLB sing 339 n n C21 H21A OLB sing 340 n n C22 H22 OLB sing 341 n n O23 HO23 OLB sing 342 n n C24 H24 OLB sing 343 n n C24 H24A OLB sing 344 n n O25 HO25 OLB sing 345 n n C6 H16 OLB sing 346 n n C6 H17 OLB sing 347 n n C7 H18 OLB sing 348 n n C7 H19 OLB sing 349 n n C8 H20 OLB sing 350 n n C8 H211 OLB sing 351 n n C9 H221 OLB sing 352 n n C10 H23 OLB sing 353 n n C11 H241 OLB sing 354 n n C11 H25 OLB sing 355 n n C11 C12 OLB sing 356 n n C12 H26 OLB sing 357 n n C12 C13 OLB sing 358 n n C12 H27 OLB sing 359 n n C13 C14 OLB sing 360 n n C13 H28 OLB sing 361 n n C13 H29 OLB sing 362 n n C14 H30 OLB sing 363 n n C14 H31 OLB sing 364 n n C14 C15 OLB sing 365 n n C15 C16 OLB sing 366 n n C15 H32 OLB sing 367 n n C15 H33 OLB sing 368 n n C16 H34 OLB sing 369 n n C16 H35 OLB sing 370 n n C16 C17 OLB sing 371 n n C17 C18 OLB sing 372 n n C17 H36 OLB sing 373 n n C17 H37 OLB sing 374 n n C18 H38 OLB sing 375 n n C18 H39 OLB sing 376 n n C18 H40 OLB sing 377 n n # _atom_sites.entry_id 4KPP _atom_sites.fract_transf_matrix[1][1] 0.015636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00258 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 501 400 CA CA . E 4 OLB A 1 502 2 OLB OLC . F 5 OLA A 1 503 8 OLA OLA . G 3 CA B 1 501 400 CA CA . H 5 OLA B 1 502 1 OLA OLA . I 5 OLA B 1 503 3 OLA OLA . J 5 OLA B 1 504 9 OLA OLA . K 5 OLA B 1 505 10 OLA OLA . L 6 HOH A 1 601 13 HOH HOH . L 6 HOH A 2 602 14 HOH HOH . L 6 HOH A 3 603 15 HOH HOH . L 6 HOH A 4 604 16 HOH HOH . L 6 HOH A 5 605 17 HOH HOH . L 6 HOH A 6 606 18 HOH HOH . L 6 HOH A 7 607 19 HOH HOH . L 6 HOH A 8 608 20 HOH HOH . L 6 HOH A 9 609 21 HOH HOH . L 6 HOH A 10 610 23 HOH HOH . L 6 HOH A 11 611 24 HOH HOH . L 6 HOH A 12 612 26 HOH HOH . L 6 HOH A 13 613 33 HOH HOH . L 6 HOH A 14 614 43 HOH HOH . L 6 HOH A 15 615 48 HOH HOH . L 6 HOH A 16 616 49 HOH HOH . L 6 HOH A 17 617 50 HOH HOH . L 6 HOH A 18 618 55 HOH HOH . L 6 HOH A 19 619 57 HOH HOH . L 6 HOH A 20 620 66 HOH HOH . L 6 HOH A 21 621 77 HOH HOH . L 6 HOH A 22 622 79 HOH HOH . L 6 HOH A 23 623 86 HOH HOH . L 6 HOH A 24 624 140 HOH HOH . L 6 HOH A 25 625 141 HOH HOH . L 6 HOH A 26 626 155 HOH HOH . L 6 HOH A 27 627 157 HOH HOH . L 6 HOH A 28 628 158 HOH HOH . L 6 HOH A 29 629 159 HOH HOH . M 6 HOH B 1 601 1 HOH HOH . M 6 HOH B 2 602 2 HOH HOH . M 6 HOH B 3 603 3 HOH HOH . M 6 HOH B 4 604 4 HOH HOH . M 6 HOH B 5 605 5 HOH HOH . M 6 HOH B 6 606 6 HOH HOH . M 6 HOH B 7 607 7 HOH HOH . M 6 HOH B 8 608 8 HOH HOH . M 6 HOH B 9 609 9 HOH HOH . M 6 HOH B 10 610 10 HOH HOH . M 6 HOH B 11 611 11 HOH HOH . M 6 HOH B 12 612 12 HOH HOH . M 6 HOH B 13 613 25 HOH HOH . M 6 HOH B 14 614 28 HOH HOH . M 6 HOH B 15 615 29 HOH HOH . M 6 HOH B 16 616 30 HOH HOH . M 6 HOH B 17 617 31 HOH HOH . M 6 HOH B 18 618 34 HOH HOH . M 6 HOH B 19 619 35 HOH HOH . M 6 HOH B 20 620 36 HOH HOH . M 6 HOH B 21 621 37 HOH HOH . M 6 HOH B 22 622 38 HOH HOH . M 6 HOH B 23 623 40 HOH HOH . M 6 HOH B 24 624 42 HOH HOH . M 6 HOH B 25 625 45 HOH HOH . M 6 HOH B 26 626 46 HOH HOH . M 6 HOH B 27 627 52 HOH HOH . M 6 HOH B 28 628 61 HOH HOH . M 6 HOH B 29 629 62 HOH HOH . M 6 HOH B 30 630 73 HOH HOH . M 6 HOH B 31 631 83 HOH HOH . M 6 HOH B 32 632 90 HOH HOH . M 6 HOH B 33 633 107 HOH HOH . M 6 HOH B 34 634 108 HOH HOH . M 6 HOH B 35 635 122 HOH HOH . M 6 HOH B 36 636 127 HOH HOH . M 6 HOH B 37 637 131 HOH HOH . M 6 HOH B 38 638 134 HOH HOH . M 6 HOH B 39 639 135 HOH HOH . M 6 HOH B 40 640 139 HOH HOH . M 6 HOH B 41 641 142 HOH HOH . M 6 HOH B 42 642 143 HOH HOH . M 6 HOH B 43 643 144 HOH HOH . M 6 HOH B 44 644 145 HOH HOH . M 6 HOH B 45 645 149 HOH HOH . M 6 HOH B 46 646 150 HOH HOH . M 6 HOH B 47 647 151 HOH HOH . M 6 HOH B 48 648 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . E 4 77.069 22.21 167.42 1 68.78 ? C1 OLB 502 A 1 HETATM 2 C C2 OLB . . . E 4 77.731 21.57 168.593 1 65.8 ? C2 OLB 502 A 1 HETATM 3 C C3 OLB . . . E 4 77.014 20.308 168.938 1 65.74 ? C3 OLB 502 A 1 HETATM 4 C C4 OLB . . . E 4 77.964 19.344 169.566 1 64.98 ? C4 OLB 502 A 1 HETATM 5 C C5 OLB . . . E 4 77.561 19.088 170.979 1 62.71 ? C5 OLB 502 A 1 HETATM 6 O O19 OLB . . . E 4 77.035 21.627 166.347 1 70.25 ? O19 OLB 502 A 1 HETATM 7 O O20 OLB . . . E 4 76.505 23.457 167.53 1 70.3 ? O20 OLB 502 A 1 HETATM 8 C C21 OLB . . . E 4 75.959 24.046 166.411 1 71.69 ? C21 OLB 502 A 1 HETATM 9 C C22 OLB . . . E 4 75.013 25.113 166.841 1 73.97 ? C22 OLB 502 A 1 HETATM 10 O O23 OLB . . . E 4 75.271 25.434 168.155 1 75.74 ? O23 OLB 502 A 1 HETATM 11 C C24 OLB . . . E 4 75.197 26.314 165.977 1 74.34 ? C24 OLB 502 A 1 HETATM 12 C C6 OLB . . . E 4 76.471 18.072 171.011 1 60.4 ? C6 OLB 502 A 1 HETATM 13 C C7 OLB . . . E 4 76.984 16.765 170.507 1 58.77 ? C7 OLB 502 A 1 HETATM 14 C C8 OLB . . . E 4 76.049 15.676 170.913 1 56.33 ? C8 OLB 502 A 1 HETATM 15 C C9 OLB . . . E 4 74.735 15.867 170.235 1 53 ? C9 OLB 502 A 1 HETATM 16 C C10 OLB . . . E 4 74.527 15.315 168.866 1 49.95 ? C10 OLB 502 A 1 HETATM 17 C C11 OLB . . . E 4 73.69 16.057 167.879 1 48.24 ? C11 OLB 502 A 1 HETATM 18 C C12 OLB . . . E 4 73.902 15.458 166.529 1 48.66 ? C12 OLB 502 A 1 HETATM 19 C C13 OLB . . . E 4 73.56 16.449 165.468 1 47.65 ? C13 OLB 502 A 1 HETATM 20 C C14 OLB . . . E 4 74.574 17.54 165.435 1 44.29 ? C14 OLB 502 A 1 HETATM 21 C C15 OLB . . . E 4 74.201 18.5 164.355 1 44.33 ? C15 OLB 502 A 1 HETATM 22 C C16 OLB . . . E 4 75.089 19.699 164.391 1 45.68 ? C16 OLB 502 A 1 HETATM 23 C C17 OLB . . . E 4 76.496 19.298 164.099 1 46.93 ? C17 OLB 502 A 1 HETATM 24 C C18 OLB . . . E 4 77.071 20.165 163.029 1 45.25 ? C18 OLB 502 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #