data_4KPV
#
_model_server_result.job_id            mRJTfNbb5E3hC6bva-aAiQ 
_model_server_result.datetime_utc      '2024-11-14 19:38:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4KPV 
#
_exptl.entry_id    4KPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URACIL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4KPV 
_cell.length_a            129.95 
_cell.length_b            129.95 
_cell.length_c            39.434 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.463 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H4 N2 O2' 
_chem_comp.formula_weight    112.087 
_chem_comp.id                URA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URACIL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URA sing 375 n n 
N1 C6 URA sing 376 n n 
N1 HN1 URA sing 377 n n 
C2 O2 URA doub 378 n n 
C2 N3 URA sing 379 n n 
N3 C4 URA sing 380 n n 
N3 HN3 URA sing 381 n n 
C4 O4 URA doub 382 n n 
C4 C5 URA sing 383 n n 
C5 C6 URA doub 384 n n 
C5 H5 URA sing 385 n n 
C6 H6 URA sing 386 n n 
#
_atom_sites.entry_id                     4KPV 
_atom_sites.fract_transf_matrix[1][1]    0.007695 
_atom_sites.fract_transf_matrix[1][2]    0.004443 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 301 301 NAG NAG . 
C 3 URA A 1 302 302 URA URA . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 430 430 HOH HOH . 
D 4 HOH A 31 431 431 HOH HOH . 
D 4 HOH A 32 432 432 HOH HOH . 
D 4 HOH A 33 433 433 HOH HOH . 
D 4 HOH A 34 434 434 HOH HOH . 
D 4 HOH A 35 435 435 HOH HOH . 
D 4 HOH A 36 436 436 HOH HOH . 
D 4 HOH A 37 437 437 HOH HOH . 
D 4 HOH A 38 438 438 HOH HOH . 
D 4 HOH A 39 439 439 HOH HOH . 
D 4 HOH A 40 440 440 HOH HOH . 
D 4 HOH A 41 441 441 HOH HOH . 
D 4 HOH A 42 442 442 HOH HOH . 
D 4 HOH A 43 443 443 HOH HOH . 
D 4 HOH A 44 444 444 HOH HOH . 
D 4 HOH A 45 445 445 HOH HOH . 
D 4 HOH A 46 446 446 HOH HOH . 
D 4 HOH A 47 447 447 HOH HOH . 
D 4 HOH A 48 448 448 HOH HOH . 
D 4 HOH A 49 449 449 HOH HOH . 
D 4 HOH A 50 450 450 HOH HOH . 
D 4 HOH A 51 451 451 HOH HOH . 
D 4 HOH A 52 452 452 HOH HOH . 
D 4 HOH A 53 453 453 HOH HOH . 
D 4 HOH A 54 454 454 HOH HOH . 
D 4 HOH A 55 455 455 HOH HOH . 
D 4 HOH A 56 456 456 HOH HOH . 
D 4 HOH A 57 457 457 HOH HOH . 
D 4 HOH A 58 458 458 HOH HOH . 
D 4 HOH A 59 459 459 HOH HOH . 
D 4 HOH A 60 460 460 HOH HOH . 
D 4 HOH A 61 461 461 HOH HOH . 
D 4 HOH A 62 462 462 HOH HOH . 
D 4 HOH A 63 463 463 HOH HOH . 
D 4 HOH A 64 464 464 HOH HOH . 
D 4 HOH A 65 465 465 HOH HOH . 
D 4 HOH A 66 466 466 HOH HOH . 
D 4 HOH A 67 467 467 HOH HOH . 
D 4 HOH A 68 468 468 HOH HOH . 
D 4 HOH A 69 469 469 HOH HOH . 
D 4 HOH A 70 470 470 HOH HOH . 
D 4 HOH A 71 471 471 HOH HOH . 
D 4 HOH A 72 472 472 HOH HOH . 
D 4 HOH A 73 473 473 HOH HOH . 
D 4 HOH A 74 474 474 HOH HOH . 
D 4 HOH A 75 475 475 HOH HOH . 
D 4 HOH A 76 476 476 HOH HOH . 
D 4 HOH A 77 477 477 HOH HOH . 
D 4 HOH A 78 478 478 HOH HOH . 
D 4 HOH A 79 479 1 HOH HOH . 
D 4 HOH A 80 480 2 HOH HOH . 
D 4 HOH A 81 481 3 HOH HOH . 
D 4 HOH A 82 482 4 HOH HOH . 
D 4 HOH A 83 483 5 HOH HOH . 
D 4 HOH A 84 484 6 HOH HOH . 
D 4 HOH A 85 485 7 HOH HOH . 
D 4 HOH A 86 486 8 HOH HOH . 
D 4 HOH A 87 487 9 HOH HOH . 
D 4 HOH A 88 488 10 HOH HOH . 
D 4 HOH A 89 489 11 HOH HOH . 
D 4 HOH A 90 490 12 HOH HOH . 
D 4 HOH A 91 491 13 HOH HOH . 
D 4 HOH A 92 492 14 HOH HOH . 
D 4 HOH A 93 493 16 HOH HOH . 
D 4 HOH A 94 494 17 HOH HOH . 
D 4 HOH A 95 495 18 HOH HOH . 
D 4 HOH A 96 496 19 HOH HOH . 
D 4 HOH A 97 497 20 HOH HOH . 
D 4 HOH A 98 498 22 HOH HOH . 
D 4 HOH A 99 499 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URA . . . C 3 -4.488 23.01 15.71 1 55.48 ? N1 URA 302 A 1 
HETATM 2 C C2 URA . . . C 3 -5.27 21.904 15.732 1 58.64 ? C2 URA 302 A 1 
HETATM 3 O O2 URA . . . C 3 -5.686 21.387 14.657 1 52.16 ? O2 URA 302 A 1 
HETATM 4 N N3 URA . . . C 3 -5.617 21.344 16.913 1 58.3 ? N3 URA 302 A 1 
HETATM 5 C C4 URA . . . C 3 -5.189 21.857 18.084 1 59.78 ? C4 URA 302 A 1 
HETATM 6 O O4 URA . . . C 3 -5.488 21.333 19.183 1 54.75 ? O4 URA 302 A 1 
HETATM 7 C C5 URA . . . C 3 -4.402 22.994 18.079 1 56.8 ? C5 URA 302 A 1 
HETATM 8 C C6 URA . . . C 3 -4.064 23.554 16.864 1 53.97 ? C6 URA 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#