data_4KQ5
#
_model_server_result.job_id            uzj6GOxBLZPv7KKC935Imw 
_model_server_result.datetime_utc      '2024-11-25 09:22:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4KQ5 
#
_exptl.entry_id    4KQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KQ5 
_cell.length_a            111.65 
_cell.length_b            111.65 
_cell.length_c            67.94 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 125 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc2 A OD1 ASP 125 A ASP 103 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 E O17 ZOL . A ZOL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc7 B MG MG . A MG 401 1_555 E O12 ZOL . A ZOL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc8 B MG MG . A MG 401 1_555 G O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc9 B MG MG . A MG 401 1_555 G O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc10 C MG MG . A MG 402 1_555 E O11 ZOL . A ZOL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc11 C MG MG . A MG 402 1_555 E O16 ZOL . A ZOL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc12 C MG MG . A MG 402 1_555 G O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc13 C MG MG . A MG 402 1_555 G O HOH . A HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc14 C MG MG . A MG 402 1_555 G O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc15 D MG MG . A MG 403 1_555 E O12 ZOL . A ZOL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc16 D MG MG . A MG 403 1_555 G O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc17 D MG MG . A MG 403 1_555 G O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc18 D MG MG . A MG 403 1_555 G O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4KQ5 
_atom_sites.fract_transf_matrix[1][1]    0.008957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008957 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 907 MG MG . 
C 2 MG A 1 402 908 MG MG . 
D 2 MG A 1 403 909 MG MG . 
E 3 ZOL A 1 404 901 ZOL ZOL . 
F 4 EDO A 1 405 1 EDO EDO . 
G 5 HOH A 1 501 1 HOH HOH . 
G 5 HOH A 2 502 2 HOH HOH . 
G 5 HOH A 3 503 3 HOH HOH . 
G 5 HOH A 4 504 4 HOH HOH . 
G 5 HOH A 5 505 5 HOH HOH . 
G 5 HOH A 6 506 6 HOH HOH . 
G 5 HOH A 7 507 7 HOH HOH . 
G 5 HOH A 8 508 8 HOH HOH . 
G 5 HOH A 9 509 9 HOH HOH . 
G 5 HOH A 10 510 10 HOH HOH . 
G 5 HOH A 11 511 11 HOH HOH . 
G 5 HOH A 12 512 12 HOH HOH . 
G 5 HOH A 13 513 14 HOH HOH . 
G 5 HOH A 14 514 15 HOH HOH . 
G 5 HOH A 15 515 16 HOH HOH . 
G 5 HOH A 16 516 17 HOH HOH . 
G 5 HOH A 17 517 18 HOH HOH . 
G 5 HOH A 18 518 19 HOH HOH . 
G 5 HOH A 19 519 20 HOH HOH . 
G 5 HOH A 20 520 21 HOH HOH . 
G 5 HOH A 21 521 22 HOH HOH . 
G 5 HOH A 22 522 23 HOH HOH . 
G 5 HOH A 23 523 24 HOH HOH . 
G 5 HOH A 24 524 25 HOH HOH . 
G 5 HOH A 25 525 26 HOH HOH . 
G 5 HOH A 26 526 27 HOH HOH . 
G 5 HOH A 27 527 28 HOH HOH . 
G 5 HOH A 28 528 29 HOH HOH . 
G 5 HOH A 29 529 30 HOH HOH . 
G 5 HOH A 30 530 31 HOH HOH . 
G 5 HOH A 31 531 32 HOH HOH . 
G 5 HOH A 32 532 33 HOH HOH . 
G 5 HOH A 33 533 34 HOH HOH . 
G 5 HOH A 34 534 35 HOH HOH . 
G 5 HOH A 35 535 36 HOH HOH . 
G 5 HOH A 36 536 37 HOH HOH . 
G 5 HOH A 37 537 38 HOH HOH . 
G 5 HOH A 38 538 39 HOH HOH . 
G 5 HOH A 39 539 40 HOH HOH . 
G 5 HOH A 40 540 41 HOH HOH . 
G 5 HOH A 41 541 42 HOH HOH . 
G 5 HOH A 42 542 43 HOH HOH . 
G 5 HOH A 43 543 44 HOH HOH . 
G 5 HOH A 44 544 45 HOH HOH . 
G 5 HOH A 45 545 46 HOH HOH . 
G 5 HOH A 46 546 47 HOH HOH . 
G 5 HOH A 47 547 49 HOH HOH . 
G 5 HOH A 48 548 50 HOH HOH . 
G 5 HOH A 49 549 51 HOH HOH . 
G 5 HOH A 50 550 52 HOH HOH . 
G 5 HOH A 51 551 53 HOH HOH . 
G 5 HOH A 52 552 54 HOH HOH . 
G 5 HOH A 53 553 55 HOH HOH . 
G 5 HOH A 54 554 56 HOH HOH . 
G 5 HOH A 55 555 57 HOH HOH . 
G 5 HOH A 56 556 58 HOH HOH . 
G 5 HOH A 57 557 59 HOH HOH . 
G 5 HOH A 58 558 60 HOH HOH . 
G 5 HOH A 59 559 61 HOH HOH . 
G 5 HOH A 60 560 62 HOH HOH . 
G 5 HOH A 61 561 63 HOH HOH . 
G 5 HOH A 62 562 64 HOH HOH . 
G 5 HOH A 63 563 65 HOH HOH . 
G 5 HOH A 64 564 66 HOH HOH . 
G 5 HOH A 65 565 68 HOH HOH . 
G 5 HOH A 66 566 69 HOH HOH . 
G 5 HOH A 67 567 70 HOH HOH . 
G 5 HOH A 68 568 72 HOH HOH . 
G 5 HOH A 69 569 73 HOH HOH . 
G 5 HOH A 70 570 74 HOH HOH . 
G 5 HOH A 71 571 75 HOH HOH . 
G 5 HOH A 72 572 76 HOH HOH . 
G 5 HOH A 73 573 77 HOH HOH . 
G 5 HOH A 74 574 78 HOH HOH . 
G 5 HOH A 75 575 79 HOH HOH . 
G 5 HOH A 76 576 80 HOH HOH . 
G 5 HOH A 77 577 81 HOH HOH . 
G 5 HOH A 78 578 82 HOH HOH . 
G 5 HOH A 79 579 83 HOH HOH . 
G 5 HOH A 80 580 84 HOH HOH . 
G 5 HOH A 81 581 85 HOH HOH . 
G 5 HOH A 82 582 86 HOH HOH . 
G 5 HOH A 83 583 87 HOH HOH . 
G 5 HOH A 84 584 88 HOH HOH . 
G 5 HOH A 85 585 89 HOH HOH . 
G 5 HOH A 86 586 90 HOH HOH . 
G 5 HOH A 87 587 91 HOH HOH . 
G 5 HOH A 88 588 92 HOH HOH . 
G 5 HOH A 89 589 93 HOH HOH . 
G 5 HOH A 90 590 94 HOH HOH . 
G 5 HOH A 91 591 95 HOH HOH . 
G 5 HOH A 92 592 96 HOH HOH . 
G 5 HOH A 93 593 97 HOH HOH . 
G 5 HOH A 94 594 98 HOH HOH . 
G 5 HOH A 95 595 99 HOH HOH . 
G 5 HOH A 96 596 100 HOH HOH . 
G 5 HOH A 97 597 101 HOH HOH . 
G 5 HOH A 98 598 102 HOH HOH . 
G 5 HOH A 99 599 103 HOH HOH . 
G 5 HOH A 100 600 104 HOH HOH . 
G 5 HOH A 101 601 105 HOH HOH . 
G 5 HOH A 102 602 106 HOH HOH . 
G 5 HOH A 103 603 107 HOH HOH . 
G 5 HOH A 104 604 108 HOH HOH . 
G 5 HOH A 105 605 109 HOH HOH . 
G 5 HOH A 106 606 110 HOH HOH . 
G 5 HOH A 107 607 111 HOH HOH . 
G 5 HOH A 108 608 112 HOH HOH . 
G 5 HOH A 109 609 113 HOH HOH . 
G 5 HOH A 110 610 114 HOH HOH . 
G 5 HOH A 111 611 115 HOH HOH . 
G 5 HOH A 112 612 116 HOH HOH . 
G 5 HOH A 113 613 117 HOH HOH . 
G 5 HOH A 114 614 118 HOH HOH . 
G 5 HOH A 115 615 119 HOH HOH . 
G 5 HOH A 116 616 120 HOH HOH . 
G 5 HOH A 117 617 121 HOH HOH . 
G 5 HOH A 118 618 122 HOH HOH . 
G 5 HOH A 119 619 123 HOH HOH . 
G 5 HOH A 120 620 124 HOH HOH . 
G 5 HOH A 121 621 125 HOH HOH . 
G 5 HOH A 122 622 126 HOH HOH . 
G 5 HOH A 123 623 127 HOH HOH . 
G 5 HOH A 124 624 128 HOH HOH . 
G 5 HOH A 125 625 130 HOH HOH . 
G 5 HOH A 126 626 131 HOH HOH . 
G 5 HOH A 127 627 132 HOH HOH . 
G 5 HOH A 128 628 133 HOH HOH . 
G 5 HOH A 129 629 134 HOH HOH . 
G 5 HOH A 130 630 135 HOH HOH . 
G 5 HOH A 131 631 136 HOH HOH . 
G 5 HOH A 132 632 137 HOH HOH . 
G 5 HOH A 133 633 138 HOH HOH . 
G 5 HOH A 134 634 139 HOH HOH . 
G 5 HOH A 135 635 140 HOH HOH . 
G 5 HOH A 136 636 141 HOH HOH . 
G 5 HOH A 137 637 142 HOH HOH . 
G 5 HOH A 138 638 143 HOH HOH . 
G 5 HOH A 139 639 144 HOH HOH . 
G 5 HOH A 140 640 145 HOH HOH . 
G 5 HOH A 141 641 146 HOH HOH . 
G 5 HOH A 142 642 147 HOH HOH . 
G 5 HOH A 143 643 148 HOH HOH . 
G 5 HOH A 144 644 149 HOH HOH . 
G 5 HOH A 145 645 150 HOH HOH . 
G 5 HOH A 146 646 151 HOH HOH . 
G 5 HOH A 147 647 152 HOH HOH . 
G 5 HOH A 148 648 153 HOH HOH . 
G 5 HOH A 149 649 154 HOH HOH . 
G 5 HOH A 150 650 155 HOH HOH . 
G 5 HOH A 151 651 156 HOH HOH . 
G 5 HOH A 152 652 157 HOH HOH . 
G 5 HOH A 153 653 158 HOH HOH . 
G 5 HOH A 154 654 159 HOH HOH . 
G 5 HOH A 155 655 160 HOH HOH . 
G 5 HOH A 156 656 161 HOH HOH . 
G 5 HOH A 157 657 162 HOH HOH . 
G 5 HOH A 158 658 163 HOH HOH . 
G 5 HOH A 159 659 164 HOH HOH . 
G 5 HOH A 160 660 165 HOH HOH . 
G 5 HOH A 161 661 166 HOH HOH . 
G 5 HOH A 162 662 167 HOH HOH . 
G 5 HOH A 163 663 168 HOH HOH . 
G 5 HOH A 164 664 169 HOH HOH . 
G 5 HOH A 165 665 170 HOH HOH . 
G 5 HOH A 166 666 171 HOH HOH . 
G 5 HOH A 167 667 172 HOH HOH . 
G 5 HOH A 168 668 173 HOH HOH . 
G 5 HOH A 169 669 174 HOH HOH . 
G 5 HOH A 170 670 175 HOH HOH . 
G 5 HOH A 171 671 176 HOH HOH . 
G 5 HOH A 172 672 177 HOH HOH . 
G 5 HOH A 173 673 178 HOH HOH . 
G 5 HOH A 174 674 179 HOH HOH . 
G 5 HOH A 175 675 180 HOH HOH . 
G 5 HOH A 176 676 181 HOH HOH . 
G 5 HOH A 177 677 182 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.349 
_atom_site.Cartn_y               32.581 
_atom_site.Cartn_z               -9.097 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.05 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#