data_4KQ9 # _model_server_result.job_id QeAGDRzG3Zt8lRUjkSWczg _model_server_result.datetime_utc '2025-03-01 07:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4KQ9 # _exptl.entry_id 4KQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KQ9 _cell.length_a 61.469 _cell.length_b 60.536 _cell.length_c 88.898 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 246 A CYS 287 1_555 A SG CYS 296 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? covale ? covale1 A C ALA 134 A ALA 175 1_555 A N MSE 135 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 135 A MSE 176 1_555 A N VAL 136 A VAL 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C GLY 141 A GLY 182 1_555 A N MSE 142 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C MSE 142 A MSE 183 1_555 A N SER 143 A SER 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C ILE 219 A ILE 260 1_555 A N MSE 220 A MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 A C MSE 220 A MSE 261 1_555 A N VAL 221 A VAL 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale7 A C THR 238 A THR 279 1_555 A N MSE 239 A MSE 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 A C MSE 239 A MSE 280 1_555 A N ALA 240 A ALA 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C VAL 257 A VAL 298 1_555 A N MSE 258 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale10 A C MSE 258 A MSE 299 1_555 A N ALA 259 A ALA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C VAL 287 A VAL 328 1_555 A N MSE 288 A MSE 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 A C MSE 288 A MSE 329 1_555 A N SER 289 A SER 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4KQ9 _atom_sites.fract_transf_matrix[1][1] 0.016268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 2 GOL A 1 502 502 GOL GOL . D 2 GOL A 1 503 503 GOL GOL . E 3 HOH A 1 601 3 HOH HOH . E 3 HOH A 2 602 4 HOH HOH . E 3 HOH A 3 603 5 HOH HOH . E 3 HOH A 4 604 6 HOH HOH . E 3 HOH A 5 605 7 HOH HOH . E 3 HOH A 6 606 8 HOH HOH . E 3 HOH A 7 607 9 HOH HOH . E 3 HOH A 8 608 10 HOH HOH . E 3 HOH A 9 609 11 HOH HOH . E 3 HOH A 10 610 13 HOH HOH . E 3 HOH A 11 611 14 HOH HOH . E 3 HOH A 12 612 15 HOH HOH . E 3 HOH A 13 613 16 HOH HOH . E 3 HOH A 14 614 17 HOH HOH . E 3 HOH A 15 615 18 HOH HOH . E 3 HOH A 16 616 19 HOH HOH . E 3 HOH A 17 617 20 HOH HOH . E 3 HOH A 18 618 21 HOH HOH . E 3 HOH A 19 619 22 HOH HOH . E 3 HOH A 20 620 23 HOH HOH . E 3 HOH A 21 621 24 HOH HOH . E 3 HOH A 22 622 25 HOH HOH . E 3 HOH A 23 623 26 HOH HOH . E 3 HOH A 24 624 27 HOH HOH . E 3 HOH A 25 625 29 HOH HOH . E 3 HOH A 26 626 30 HOH HOH . E 3 HOH A 27 627 31 HOH HOH . E 3 HOH A 28 628 32 HOH HOH . E 3 HOH A 29 629 33 HOH HOH . E 3 HOH A 30 630 34 HOH HOH . E 3 HOH A 31 631 35 HOH HOH . E 3 HOH A 32 632 36 HOH HOH . E 3 HOH A 33 633 37 HOH HOH . E 3 HOH A 34 634 38 HOH HOH . E 3 HOH A 35 635 39 HOH HOH . E 3 HOH A 36 636 40 HOH HOH . E 3 HOH A 37 637 41 HOH HOH . E 3 HOH A 38 638 42 HOH HOH . E 3 HOH A 39 639 43 HOH HOH . E 3 HOH A 40 640 44 HOH HOH . E 3 HOH A 41 641 45 HOH HOH . E 3 HOH A 42 642 46 HOH HOH . E 3 HOH A 43 643 47 HOH HOH . E 3 HOH A 44 644 48 HOH HOH . E 3 HOH A 45 645 49 HOH HOH . E 3 HOH A 46 646 50 HOH HOH . E 3 HOH A 47 647 51 HOH HOH . E 3 HOH A 48 648 52 HOH HOH . E 3 HOH A 49 649 53 HOH HOH . E 3 HOH A 50 650 54 HOH HOH . E 3 HOH A 51 651 55 HOH HOH . E 3 HOH A 52 652 56 HOH HOH . E 3 HOH A 53 653 57 HOH HOH . E 3 HOH A 54 654 58 HOH HOH . E 3 HOH A 55 655 59 HOH HOH . E 3 HOH A 56 656 60 HOH HOH . E 3 HOH A 57 657 61 HOH HOH . E 3 HOH A 58 658 62 HOH HOH . E 3 HOH A 59 659 63 HOH HOH . E 3 HOH A 60 660 64 HOH HOH . E 3 HOH A 61 661 65 HOH HOH . E 3 HOH A 62 662 66 HOH HOH . E 3 HOH A 63 663 67 HOH HOH . E 3 HOH A 64 664 68 HOH HOH . E 3 HOH A 65 665 69 HOH HOH . E 3 HOH A 66 666 70 HOH HOH . E 3 HOH A 67 667 71 HOH HOH . E 3 HOH A 68 668 72 HOH HOH . E 3 HOH A 69 669 73 HOH HOH . E 3 HOH A 70 670 74 HOH HOH . E 3 HOH A 71 671 75 HOH HOH . E 3 HOH A 72 672 76 HOH HOH . E 3 HOH A 73 673 77 HOH HOH . E 3 HOH A 74 674 79 HOH HOH . E 3 HOH A 75 675 80 HOH HOH . E 3 HOH A 76 676 81 HOH HOH . E 3 HOH A 77 677 82 HOH HOH . E 3 HOH A 78 678 83 HOH HOH . E 3 HOH A 79 679 84 HOH HOH . E 3 HOH A 80 680 85 HOH HOH . E 3 HOH A 81 681 86 HOH HOH . E 3 HOH A 82 682 87 HOH HOH . E 3 HOH A 83 683 88 HOH HOH . E 3 HOH A 84 684 89 HOH HOH . E 3 HOH A 85 685 90 HOH HOH . E 3 HOH A 86 686 91 HOH HOH . E 3 HOH A 87 687 92 HOH HOH . E 3 HOH A 88 688 93 HOH HOH . E 3 HOH A 89 689 94 HOH HOH . E 3 HOH A 90 690 95 HOH HOH . E 3 HOH A 91 691 96 HOH HOH . E 3 HOH A 92 692 97 HOH HOH . E 3 HOH A 93 693 98 HOH HOH . E 3 HOH A 94 694 99 HOH HOH . E 3 HOH A 95 695 100 HOH HOH . E 3 HOH A 96 696 101 HOH HOH . E 3 HOH A 97 697 102 HOH HOH . E 3 HOH A 98 698 103 HOH HOH . E 3 HOH A 99 699 104 HOH HOH . E 3 HOH A 100 700 105 HOH HOH . E 3 HOH A 101 701 106 HOH HOH . E 3 HOH A 102 702 107 HOH HOH . E 3 HOH A 103 703 108 HOH HOH . E 3 HOH A 104 704 109 HOH HOH . E 3 HOH A 105 705 110 HOH HOH . E 3 HOH A 106 706 111 HOH HOH . E 3 HOH A 107 707 112 HOH HOH . E 3 HOH A 108 708 113 HOH HOH . E 3 HOH A 109 709 114 HOH HOH . E 3 HOH A 110 710 115 HOH HOH . E 3 HOH A 111 711 117 HOH HOH . E 3 HOH A 112 712 119 HOH HOH . E 3 HOH A 113 713 120 HOH HOH . E 3 HOH A 114 714 121 HOH HOH . E 3 HOH A 115 715 122 HOH HOH . E 3 HOH A 116 716 123 HOH HOH . E 3 HOH A 117 717 124 HOH HOH . E 3 HOH A 118 718 125 HOH HOH . E 3 HOH A 119 719 126 HOH HOH . E 3 HOH A 120 720 127 HOH HOH . E 3 HOH A 121 721 128 HOH HOH . E 3 HOH A 122 722 129 HOH HOH . E 3 HOH A 123 723 130 HOH HOH . E 3 HOH A 124 724 131 HOH HOH . E 3 HOH A 125 725 132 HOH HOH . E 3 HOH A 126 726 133 HOH HOH . E 3 HOH A 127 727 134 HOH HOH . E 3 HOH A 128 728 135 HOH HOH . E 3 HOH A 129 729 136 HOH HOH . E 3 HOH A 130 730 137 HOH HOH . E 3 HOH A 131 731 138 HOH HOH . E 3 HOH A 132 732 139 HOH HOH . E 3 HOH A 133 733 140 HOH HOH . E 3 HOH A 134 734 141 HOH HOH . E 3 HOH A 135 735 142 HOH HOH . E 3 HOH A 136 736 143 HOH HOH . E 3 HOH A 137 737 144 HOH HOH . E 3 HOH A 138 738 145 HOH HOH . E 3 HOH A 139 739 146 HOH HOH . E 3 HOH A 140 740 147 HOH HOH . E 3 HOH A 141 741 149 HOH HOH . E 3 HOH A 142 742 150 HOH HOH . E 3 HOH A 143 743 151 HOH HOH . E 3 HOH A 144 744 152 HOH HOH . E 3 HOH A 145 745 153 HOH HOH . E 3 HOH A 146 746 154 HOH HOH . E 3 HOH A 147 747 155 HOH HOH . E 3 HOH A 148 748 156 HOH HOH . E 3 HOH A 149 749 158 HOH HOH . E 3 HOH A 150 750 159 HOH HOH . E 3 HOH A 151 751 160 HOH HOH . E 3 HOH A 152 752 161 HOH HOH . E 3 HOH A 153 753 162 HOH HOH . E 3 HOH A 154 754 163 HOH HOH . E 3 HOH A 155 755 164 HOH HOH . E 3 HOH A 156 756 165 HOH HOH . E 3 HOH A 157 757 166 HOH HOH . E 3 HOH A 158 758 167 HOH HOH . E 3 HOH A 159 759 168 HOH HOH . E 3 HOH A 160 760 169 HOH HOH . E 3 HOH A 161 761 170 HOH HOH . E 3 HOH A 162 762 171 HOH HOH . E 3 HOH A 163 763 172 HOH HOH . E 3 HOH A 164 764 173 HOH HOH . E 3 HOH A 165 765 174 HOH HOH . E 3 HOH A 166 766 175 HOH HOH . E 3 HOH A 167 767 176 HOH HOH . E 3 HOH A 168 768 177 HOH HOH . E 3 HOH A 169 769 179 HOH HOH . E 3 HOH A 170 770 180 HOH HOH . E 3 HOH A 171 771 181 HOH HOH . E 3 HOH A 172 772 182 HOH HOH . E 3 HOH A 173 773 183 HOH HOH . E 3 HOH A 174 774 184 HOH HOH . E 3 HOH A 175 775 185 HOH HOH . E 3 HOH A 176 776 186 HOH HOH . E 3 HOH A 177 777 187 HOH HOH . E 3 HOH A 178 778 189 HOH HOH . E 3 HOH A 179 779 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 14.264 21.166 50.537 1 35.31 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 13.141 20.78 51.339 1 35.22 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 15.325 20.067 50.406 1 35.29 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 15.833 19.673 51.682 1 38.23 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 16.565 20.559 49.66 1 32.89 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 17.26 21.62 50.328 1 25.91 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #