data_4KQI # _model_server_result.job_id -7v69yChjxJczQGhrxFHUA _model_server_result.datetime_utc '2024-11-05 23:08:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4KQI # _exptl.entry_id 4KQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KQI _cell.length_a 46.753 _cell.length_b 71.278 _cell.length_c 89.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 71.278 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 160 A CYS 160 1_555 A SG CYS 256 A CYS 256 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf2 A SG CYS 160 A CYS 160 1_555 A SG CYS 256 A CYS 256 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4KQI _atom_sites.fract_transf_matrix[1][1] 0.021389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBZ A 1 401 990 RBZ RBZ . C 3 EDO A 1 402 801 EDO EDO . D 4 NIO A 1 403 901 NIO NIO . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 41 HOH HOH . E 5 HOH A 41 541 42 HOH HOH . E 5 HOH A 42 542 43 HOH HOH . E 5 HOH A 43 543 44 HOH HOH . E 5 HOH A 44 544 45 HOH HOH . E 5 HOH A 45 545 46 HOH HOH . E 5 HOH A 46 546 47 HOH HOH . E 5 HOH A 47 547 48 HOH HOH . E 5 HOH A 48 548 49 HOH HOH . E 5 HOH A 49 549 50 HOH HOH . E 5 HOH A 50 550 51 HOH HOH . E 5 HOH A 51 551 52 HOH HOH . E 5 HOH A 52 552 53 HOH HOH . E 5 HOH A 53 553 54 HOH HOH . E 5 HOH A 54 554 55 HOH HOH . E 5 HOH A 55 555 56 HOH HOH . E 5 HOH A 56 556 57 HOH HOH . E 5 HOH A 57 557 58 HOH HOH . E 5 HOH A 58 558 59 HOH HOH . E 5 HOH A 59 559 61 HOH HOH . E 5 HOH A 60 560 62 HOH HOH . E 5 HOH A 61 561 63 HOH HOH . E 5 HOH A 62 562 64 HOH HOH . E 5 HOH A 63 563 65 HOH HOH . E 5 HOH A 64 564 66 HOH HOH . E 5 HOH A 65 565 68 HOH HOH . E 5 HOH A 66 566 69 HOH HOH . E 5 HOH A 67 567 70 HOH HOH . E 5 HOH A 68 568 71 HOH HOH . E 5 HOH A 69 569 72 HOH HOH . E 5 HOH A 70 570 73 HOH HOH . E 5 HOH A 71 571 74 HOH HOH . E 5 HOH A 72 572 75 HOH HOH . E 5 HOH A 73 573 76 HOH HOH . E 5 HOH A 74 574 78 HOH HOH . E 5 HOH A 75 575 79 HOH HOH . E 5 HOH A 76 576 80 HOH HOH . E 5 HOH A 77 577 82 HOH HOH . E 5 HOH A 78 578 83 HOH HOH . E 5 HOH A 79 579 84 HOH HOH . E 5 HOH A 80 580 85 HOH HOH . E 5 HOH A 81 581 87 HOH HOH . E 5 HOH A 82 582 89 HOH HOH . E 5 HOH A 83 583 90 HOH HOH . E 5 HOH A 84 584 91 HOH HOH . E 5 HOH A 85 585 92 HOH HOH . E 5 HOH A 86 586 93 HOH HOH . E 5 HOH A 87 587 94 HOH HOH . E 5 HOH A 88 588 95 HOH HOH . E 5 HOH A 89 589 96 HOH HOH . E 5 HOH A 90 590 97 HOH HOH . E 5 HOH A 91 591 98 HOH HOH . E 5 HOH A 92 592 99 HOH HOH . E 5 HOH A 93 593 100 HOH HOH . E 5 HOH A 94 594 102 HOH HOH . E 5 HOH A 95 595 103 HOH HOH . E 5 HOH A 96 596 104 HOH HOH . E 5 HOH A 97 597 105 HOH HOH . E 5 HOH A 98 598 108 HOH HOH . E 5 HOH A 99 599 109 HOH HOH . E 5 HOH A 100 600 115 HOH HOH . E 5 HOH A 101 601 116 HOH HOH . E 5 HOH A 102 602 117 HOH HOH . E 5 HOH A 103 603 118 HOH HOH . E 5 HOH A 104 604 119 HOH HOH . E 5 HOH A 105 605 120 HOH HOH . E 5 HOH A 106 606 122 HOH HOH . E 5 HOH A 107 607 123 HOH HOH . E 5 HOH A 108 608 124 HOH HOH . E 5 HOH A 109 609 125 HOH HOH . E 5 HOH A 110 610 126 HOH HOH . E 5 HOH A 111 611 127 HOH HOH . E 5 HOH A 112 612 128 HOH HOH . E 5 HOH A 113 613 129 HOH HOH . E 5 HOH A 114 614 130 HOH HOH . E 5 HOH A 115 615 132 HOH HOH . E 5 HOH A 116 616 133 HOH HOH . E 5 HOH A 117 617 134 HOH HOH . E 5 HOH A 118 618 135 HOH HOH . E 5 HOH A 119 619 136 HOH HOH . E 5 HOH A 120 620 137 HOH HOH . E 5 HOH A 121 621 138 HOH HOH . E 5 HOH A 122 622 140 HOH HOH . E 5 HOH A 123 623 143 HOH HOH . E 5 HOH A 124 624 144 HOH HOH . E 5 HOH A 125 625 145 HOH HOH . E 5 HOH A 126 626 147 HOH HOH . E 5 HOH A 127 627 148 HOH HOH . E 5 HOH A 128 628 149 HOH HOH . E 5 HOH A 129 629 150 HOH HOH . E 5 HOH A 130 630 151 HOH HOH . E 5 HOH A 131 631 152 HOH HOH . E 5 HOH A 132 632 153 HOH HOH . E 5 HOH A 133 633 154 HOH HOH . E 5 HOH A 134 634 155 HOH HOH . E 5 HOH A 135 635 156 HOH HOH . E 5 HOH A 136 636 157 HOH HOH . E 5 HOH A 137 637 158 HOH HOH . E 5 HOH A 138 638 159 HOH HOH . E 5 HOH A 139 639 160 HOH HOH . E 5 HOH A 140 640 161 HOH HOH . E 5 HOH A 141 641 162 HOH HOH . E 5 HOH A 142 642 163 HOH HOH . E 5 HOH A 143 643 164 HOH HOH . E 5 HOH A 144 644 165 HOH HOH . E 5 HOH A 145 645 166 HOH HOH . E 5 HOH A 146 646 167 HOH HOH . E 5 HOH A 147 647 168 HOH HOH . E 5 HOH A 148 648 169 HOH HOH . E 5 HOH A 149 649 170 HOH HOH . E 5 HOH A 150 650 171 HOH HOH . E 5 HOH A 151 651 172 HOH HOH . E 5 HOH A 152 652 173 HOH HOH . E 5 HOH A 153 653 174 HOH HOH . E 5 HOH A 154 654 175 HOH HOH . E 5 HOH A 155 655 176 HOH HOH . E 5 HOH A 156 656 177 HOH HOH . E 5 HOH A 157 657 178 HOH HOH . E 5 HOH A 158 658 179 HOH HOH . E 5 HOH A 159 659 180 HOH HOH . E 5 HOH A 160 660 181 HOH HOH . E 5 HOH A 161 661 182 HOH HOH . E 5 HOH A 162 662 183 HOH HOH . E 5 HOH A 163 663 184 HOH HOH . E 5 HOH A 164 664 185 HOH HOH . E 5 HOH A 165 665 186 HOH HOH . E 5 HOH A 166 666 187 HOH HOH . E 5 HOH A 167 667 188 HOH HOH . E 5 HOH A 168 668 189 HOH HOH . E 5 HOH A 169 669 190 HOH HOH . E 5 HOH A 170 670 191 HOH HOH . E 5 HOH A 171 671 192 HOH HOH . E 5 HOH A 172 672 193 HOH HOH . E 5 HOH A 173 673 194 HOH HOH . E 5 HOH A 174 674 195 HOH HOH . E 5 HOH A 175 675 196 HOH HOH . E 5 HOH A 176 676 197 HOH HOH . E 5 HOH A 177 677 198 HOH HOH . E 5 HOH A 178 678 199 HOH HOH . E 5 HOH A 179 679 200 HOH HOH . E 5 HOH A 180 680 201 HOH HOH . E 5 HOH A 181 681 202 HOH HOH . E 5 HOH A 182 682 203 HOH HOH . E 5 HOH A 183 683 204 HOH HOH . E 5 HOH A 184 684 205 HOH HOH . E 5 HOH A 185 685 206 HOH HOH . E 5 HOH A 186 686 207 HOH HOH . E 5 HOH A 187 687 208 HOH HOH . E 5 HOH A 188 688 209 HOH HOH . E 5 HOH A 189 689 210 HOH HOH . E 5 HOH A 190 690 211 HOH HOH . E 5 HOH A 191 691 212 HOH HOH . E 5 HOH A 192 692 213 HOH HOH . E 5 HOH A 193 693 214 HOH HOH . E 5 HOH A 194 694 215 HOH HOH . E 5 HOH A 195 695 216 HOH HOH . E 5 HOH A 196 696 217 HOH HOH . E 5 HOH A 197 697 218 HOH HOH . E 5 HOH A 198 698 219 HOH HOH . E 5 HOH A 199 699 220 HOH HOH . E 5 HOH A 200 700 221 HOH HOH . E 5 HOH A 201 701 222 HOH HOH . E 5 HOH A 202 702 223 HOH HOH . E 5 HOH A 203 703 224 HOH HOH . E 5 HOH A 204 704 225 HOH HOH . E 5 HOH A 205 705 226 HOH HOH . E 5 HOH A 206 706 227 HOH HOH . E 5 HOH A 207 707 228 HOH HOH . E 5 HOH A 208 708 229 HOH HOH . E 5 HOH A 209 709 230 HOH HOH . E 5 HOH A 210 710 231 HOH HOH . E 5 HOH A 211 711 232 HOH HOH . E 5 HOH A 212 712 233 HOH HOH . E 5 HOH A 213 713 234 HOH HOH . E 5 HOH A 214 714 235 HOH HOH . E 5 HOH A 215 715 236 HOH HOH . E 5 HOH A 216 716 237 HOH HOH . E 5 HOH A 217 717 238 HOH HOH . E 5 HOH A 218 718 239 HOH HOH . E 5 HOH A 219 719 240 HOH HOH . E 5 HOH A 220 720 241 HOH HOH . E 5 HOH A 221 721 242 HOH HOH . E 5 HOH A 222 722 243 HOH HOH . E 5 HOH A 223 723 244 HOH HOH . E 5 HOH A 224 724 245 HOH HOH . E 5 HOH A 225 725 246 HOH HOH . E 5 HOH A 226 726 247 HOH HOH . E 5 HOH A 227 727 248 HOH HOH . E 5 HOH A 228 728 249 HOH HOH . E 5 HOH A 229 729 250 HOH HOH . E 5 HOH A 230 730 251 HOH HOH . E 5 HOH A 231 731 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 73.548 23.163 5.306 1 32.06 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 72.998 22.543 4.127 1 28.62 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 73.503 22.268 6.539 1 23.9 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 74.505 22.192 7.516 1 29.29 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #