data_4KQJ # _model_server_result.job_id NgS5KSJzNfZyNB3PieObLA _model_server_result.datetime_utc '2024-11-13 05:11:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4KQJ # _exptl.entry_id 4KQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KQJ _cell.length_a 71.807 _cell.length_b 89.154 _cell.length_c 46.944 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.807 89.154 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 237 n n P O2P NCN doub 238 n n P O3P NCN sing 239 n n P O5' NCN sing 240 n n O1P HOP1 NCN sing 241 n n O5' C5' NCN sing 242 n n C5' C4' NCN sing 243 n n C5' "H5'1" NCN sing 244 n n C5' "H5'2" NCN sing 245 n n C4' O4' NCN sing 246 n n C4' C3' NCN sing 247 n n C4' H4' NCN sing 248 n n O4' C1' NCN sing 249 n n C3' O3' NCN sing 250 n n C3' C2' NCN sing 251 n n C3' H3' NCN sing 252 n n O3' "HO'3" NCN sing 253 n n C2' O2' NCN sing 254 n n C2' C1' NCN sing 255 n n C2' H2' NCN sing 256 n n O2' "HO'2" NCN sing 257 n n C1' N1 NCN sing 258 n n C1' H1' NCN sing 259 n n N1 C6 NCN sing 260 n y N1 C2 NCN doub 261 n y C6 C5 NCN doub 262 n y C6 H6 NCN sing 263 n n C5 C4 NCN sing 264 n y C5 H5 NCN sing 265 n n C4 C3 NCN doub 266 n y C4 H4 NCN sing 267 n n C3 C2 NCN sing 268 n y C3 C7 NCN sing 269 n n C2 H2 NCN sing 270 n n C7 O7 NCN sing 271 n n C7 O8 NCN doub 272 n n O7 HO7 NCN sing 273 n n # _atom_sites.entry_id 4KQJ _atom_sites.fract_transf_matrix[1][1] 0.013926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCN A 1 401 991 NCN NCN . C 3 PCR A 1 402 901 PCR PCR . D 4 SO4 A 1 403 701 SO4 SO4 . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 4 HOH HOH . E 5 HOH A 5 505 5 HOH HOH . E 5 HOH A 6 506 6 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 8 HOH HOH . E 5 HOH A 9 509 9 HOH HOH . E 5 HOH A 10 510 10 HOH HOH . E 5 HOH A 11 511 11 HOH HOH . E 5 HOH A 12 512 12 HOH HOH . E 5 HOH A 13 513 13 HOH HOH . E 5 HOH A 14 514 14 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 16 HOH HOH . E 5 HOH A 17 517 17 HOH HOH . E 5 HOH A 18 518 18 HOH HOH . E 5 HOH A 19 519 19 HOH HOH . E 5 HOH A 20 520 20 HOH HOH . E 5 HOH A 21 521 21 HOH HOH . E 5 HOH A 22 522 22 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 24 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 26 HOH HOH . E 5 HOH A 27 527 27 HOH HOH . E 5 HOH A 28 528 28 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 30 HOH HOH . E 5 HOH A 31 531 31 HOH HOH . E 5 HOH A 32 532 32 HOH HOH . E 5 HOH A 33 533 33 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 35 HOH HOH . E 5 HOH A 36 536 36 HOH HOH . E 5 HOH A 37 537 37 HOH HOH . E 5 HOH A 38 538 38 HOH HOH . E 5 HOH A 39 539 39 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 41 HOH HOH . E 5 HOH A 42 542 42 HOH HOH . E 5 HOH A 43 543 43 HOH HOH . E 5 HOH A 44 544 44 HOH HOH . E 5 HOH A 45 545 45 HOH HOH . E 5 HOH A 46 546 46 HOH HOH . E 5 HOH A 47 547 47 HOH HOH . E 5 HOH A 48 548 48 HOH HOH . E 5 HOH A 49 549 49 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 51 HOH HOH . E 5 HOH A 52 552 52 HOH HOH . E 5 HOH A 53 553 53 HOH HOH . E 5 HOH A 54 554 54 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 56 HOH HOH . E 5 HOH A 57 557 57 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 59 HOH HOH . E 5 HOH A 60 560 60 HOH HOH . E 5 HOH A 61 561 61 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 63 HOH HOH . E 5 HOH A 64 564 64 HOH HOH . E 5 HOH A 65 565 65 HOH HOH . E 5 HOH A 66 566 66 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . E 5 HOH A 68 568 68 HOH HOH . E 5 HOH A 69 569 69 HOH HOH . E 5 HOH A 70 570 70 HOH HOH . E 5 HOH A 71 571 71 HOH HOH . E 5 HOH A 72 572 72 HOH HOH . E 5 HOH A 73 573 73 HOH HOH . E 5 HOH A 74 574 74 HOH HOH . E 5 HOH A 75 575 75 HOH HOH . E 5 HOH A 76 576 76 HOH HOH . E 5 HOH A 77 577 77 HOH HOH . E 5 HOH A 78 578 78 HOH HOH . E 5 HOH A 79 579 79 HOH HOH . E 5 HOH A 80 580 80 HOH HOH . E 5 HOH A 81 581 81 HOH HOH . E 5 HOH A 82 582 82 HOH HOH . E 5 HOH A 83 583 83 HOH HOH . E 5 HOH A 84 584 84 HOH HOH . E 5 HOH A 85 585 85 HOH HOH . E 5 HOH A 86 586 86 HOH HOH . E 5 HOH A 87 587 87 HOH HOH . E 5 HOH A 88 588 88 HOH HOH . E 5 HOH A 89 589 90 HOH HOH . E 5 HOH A 90 590 91 HOH HOH . E 5 HOH A 91 591 92 HOH HOH . E 5 HOH A 92 592 93 HOH HOH . E 5 HOH A 93 593 94 HOH HOH . E 5 HOH A 94 594 95 HOH HOH . E 5 HOH A 95 595 96 HOH HOH . E 5 HOH A 96 596 97 HOH HOH . E 5 HOH A 97 597 98 HOH HOH . E 5 HOH A 98 598 99 HOH HOH . E 5 HOH A 99 599 100 HOH HOH . E 5 HOH A 100 600 101 HOH HOH . E 5 HOH A 101 601 102 HOH HOH . E 5 HOH A 102 602 103 HOH HOH . E 5 HOH A 103 603 104 HOH HOH . E 5 HOH A 104 604 105 HOH HOH . E 5 HOH A 105 605 106 HOH HOH . E 5 HOH A 106 606 107 HOH HOH . E 5 HOH A 107 607 108 HOH HOH . E 5 HOH A 108 608 109 HOH HOH . E 5 HOH A 109 609 110 HOH HOH . E 5 HOH A 110 610 111 HOH HOH . E 5 HOH A 111 611 112 HOH HOH . E 5 HOH A 112 612 113 HOH HOH . E 5 HOH A 113 613 114 HOH HOH . E 5 HOH A 114 614 115 HOH HOH . E 5 HOH A 115 615 116 HOH HOH . E 5 HOH A 116 616 117 HOH HOH . E 5 HOH A 117 617 118 HOH HOH . E 5 HOH A 118 618 119 HOH HOH . E 5 HOH A 119 619 120 HOH HOH . E 5 HOH A 120 620 121 HOH HOH . E 5 HOH A 121 621 122 HOH HOH . E 5 HOH A 122 622 123 HOH HOH . E 5 HOH A 123 623 124 HOH HOH . E 5 HOH A 124 624 125 HOH HOH . E 5 HOH A 125 625 126 HOH HOH . E 5 HOH A 126 626 127 HOH HOH . E 5 HOH A 127 627 128 HOH HOH . E 5 HOH A 128 628 129 HOH HOH . E 5 HOH A 129 629 130 HOH HOH . E 5 HOH A 130 630 131 HOH HOH . E 5 HOH A 131 631 132 HOH HOH . E 5 HOH A 132 632 133 HOH HOH . E 5 HOH A 133 633 134 HOH HOH . E 5 HOH A 134 634 135 HOH HOH . E 5 HOH A 135 635 136 HOH HOH . E 5 HOH A 136 636 137 HOH HOH . E 5 HOH A 137 637 138 HOH HOH . E 5 HOH A 138 638 139 HOH HOH . E 5 HOH A 139 639 140 HOH HOH . E 5 HOH A 140 640 141 HOH HOH . E 5 HOH A 141 641 142 HOH HOH . E 5 HOH A 142 642 143 HOH HOH . E 5 HOH A 143 643 144 HOH HOH . E 5 HOH A 144 644 145 HOH HOH . E 5 HOH A 145 645 146 HOH HOH . E 5 HOH A 146 646 147 HOH HOH . E 5 HOH A 147 647 148 HOH HOH . E 5 HOH A 148 648 149 HOH HOH . E 5 HOH A 149 649 150 HOH HOH . E 5 HOH A 150 650 151 HOH HOH . E 5 HOH A 151 651 152 HOH HOH . E 5 HOH A 152 652 153 HOH HOH . E 5 HOH A 153 653 154 HOH HOH . E 5 HOH A 154 654 155 HOH HOH . E 5 HOH A 155 655 156 HOH HOH . E 5 HOH A 156 656 157 HOH HOH . E 5 HOH A 157 657 158 HOH HOH . E 5 HOH A 158 658 159 HOH HOH . E 5 HOH A 159 659 160 HOH HOH . E 5 HOH A 160 660 161 HOH HOH . E 5 HOH A 161 661 162 HOH HOH . E 5 HOH A 162 662 163 HOH HOH . E 5 HOH A 163 663 164 HOH HOH . E 5 HOH A 164 664 165 HOH HOH . E 5 HOH A 165 665 166 HOH HOH . E 5 HOH A 166 666 167 HOH HOH . E 5 HOH A 167 667 168 HOH HOH . E 5 HOH A 168 668 169 HOH HOH . E 5 HOH A 169 669 170 HOH HOH . E 5 HOH A 170 670 171 HOH HOH . E 5 HOH A 171 671 172 HOH HOH . E 5 HOH A 172 672 173 HOH HOH . E 5 HOH A 173 673 174 HOH HOH . E 5 HOH A 174 674 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . B 2 59.448 38.958 5.753 1 6.31 ? P NCN 401 A 1 HETATM 2 O O1P NCN . . . B 2 59.05 37.644 5.019 1 6.23 ? O1P NCN 401 A 1 HETATM 3 O O2P NCN . . . B 2 59.514 40.116 4.805 1 6.68 ? O2P NCN 401 A 1 HETATM 4 O O3P NCN . . . B 2 60.582 38.728 6.658 1 6.72 ? O3P NCN 401 A 1 HETATM 5 O O5' NCN . . . B 2 58.162 39.347 6.641 1 6.85 ? O5' NCN 401 A 1 HETATM 6 C C5' NCN . . . B 2 57.873 38.454 7.74 1 7.12 ? C5' NCN 401 A 1 HETATM 7 C C4' NCN . . . B 2 57.369 39.034 9.03 1 7.5 ? C4' NCN 401 A 1 HETATM 8 O O4' NCN . . . B 2 56.678 40.236 9.039 1 7.55 ? O4' NCN 401 A 1 HETATM 9 C C3' NCN . . . B 2 57.028 38.116 10.158 1 7.93 ? C3' NCN 401 A 1 HETATM 10 O O3' NCN . . . B 2 57.601 37.943 11.426 1 7.25 ? O3' NCN 401 A 1 HETATM 11 C C2' NCN . . . B 2 55.558 38.461 10.109 1 8.01 ? C2' NCN 401 A 1 HETATM 12 O O2' NCN . . . B 2 54.532 37.803 10.869 1 8.18 ? O2' NCN 401 A 1 HETATM 13 C C1' NCN . . . B 2 55.354 39.79 9.383 1 7.93 ? C1' NCN 401 A 1 HETATM 14 N N1 NCN . . . B 2 54.384 39.882 8.268 1 8.34 ? N1 NCN 401 A 1 HETATM 15 C C6 NCN . . . B 2 54.744 40.463 7.109 1 8.27 ? C6 NCN 401 A 1 HETATM 16 C C5 NCN . . . B 2 53.793 40.621 6.112 1 8.75 ? C5 NCN 401 A 1 HETATM 17 C C4 NCN . . . B 2 52.5 40.138 6.28 1 9 ? C4 NCN 401 A 1 HETATM 18 C C3 NCN . . . B 2 52.169 39.574 7.519 1 8.7 ? C3 NCN 401 A 1 HETATM 19 C C2 NCN . . . B 2 53.154 39.434 8.48 1 8.45 ? C2 NCN 401 A 1 HETATM 20 C C7 NCN . . . B 2 50.774 39.037 7.725 1 9.08 ? C7 NCN 401 A 1 HETATM 21 O O7 NCN . . . B 2 49.945 39.219 6.811 1 8.95 ? O7 NCN 401 A 1 HETATM 22 O O8 NCN . . . B 2 50.497 38.329 8.715 1 9.46 ? O8 NCN 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #