data_4KQO # _model_server_result.job_id JdmL8I8S8oF57VI5SmMkIg _model_server_result.datetime_utc '2024-10-19 12:24:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4KQO # _exptl.entry_id 4KQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.26 _cell.angle_beta 86.04 _cell.angle_gamma 85.59 _cell.entry_id 4KQO _cell.length_a 57.049 _cell.length_b 74.935 _cell.length_c 82.785 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 279 A SER 294 1_555 C C01 JPP . A JPP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale2 B OG SER 279 B SER 294 1_555 F C01 JPP . B JPP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4KQO _atom_sites.fract_transf_matrix[1][1] 0.017529 _atom_sites.fract_transf_matrix[1][2] -0.001352 _atom_sites.fract_transf_matrix[1][3] -0.000828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013385 _atom_sites.fract_transf_matrix[2][3] -0.004483 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JPP A 1 601 999 JPP JPP . D 3 GOL A 1 602 2 GOL GOL . E 3 GOL A 1 603 1 GOL GOL . F 2 JPP B 1 601 999 JPP JPP . G 3 GOL B 1 602 1 GOL GOL . H 4 IMD B 1 603 3 IMD IMD . I 5 CL B 1 604 4 CL CL . J 5 CL B 1 605 5 CL CL . K 6 HOH A 1 701 2 HOH HOH . K 6 HOH A 2 702 5 HOH HOH . K 6 HOH A 3 703 8 HOH HOH . K 6 HOH A 4 704 10 HOH HOH . K 6 HOH A 5 705 11 HOH HOH . K 6 HOH A 6 706 14 HOH HOH . K 6 HOH A 7 707 15 HOH HOH . K 6 HOH A 8 708 17 HOH HOH . K 6 HOH A 9 709 18 HOH HOH . K 6 HOH A 10 710 19 HOH HOH . K 6 HOH A 11 711 20 HOH HOH . K 6 HOH A 12 712 26 HOH HOH . K 6 HOH A 13 713 27 HOH HOH . K 6 HOH A 14 714 28 HOH HOH . K 6 HOH A 15 715 30 HOH HOH . K 6 HOH A 16 716 31 HOH HOH . K 6 HOH A 17 717 32 HOH HOH . K 6 HOH A 18 718 34 HOH HOH . K 6 HOH A 19 719 35 HOH HOH . K 6 HOH A 20 720 37 HOH HOH . K 6 HOH A 21 721 39 HOH HOH . K 6 HOH A 22 722 40 HOH HOH . K 6 HOH A 23 723 41 HOH HOH . K 6 HOH A 24 724 51 HOH HOH . K 6 HOH A 25 725 52 HOH HOH . K 6 HOH A 26 726 55 HOH HOH . K 6 HOH A 27 727 58 HOH HOH . K 6 HOH A 28 728 62 HOH HOH . K 6 HOH A 29 729 63 HOH HOH . K 6 HOH A 30 730 64 HOH HOH . K 6 HOH A 31 731 65 HOH HOH . K 6 HOH A 32 732 66 HOH HOH . K 6 HOH A 33 733 69 HOH HOH . K 6 HOH A 34 734 72 HOH HOH . K 6 HOH A 35 735 73 HOH HOH . K 6 HOH A 36 736 75 HOH HOH . K 6 HOH A 37 737 76 HOH HOH . K 6 HOH A 38 738 77 HOH HOH . K 6 HOH A 39 739 78 HOH HOH . K 6 HOH A 40 740 81 HOH HOH . K 6 HOH A 41 741 82 HOH HOH . K 6 HOH A 42 742 83 HOH HOH . K 6 HOH A 43 743 89 HOH HOH . K 6 HOH A 44 744 90 HOH HOH . K 6 HOH A 45 745 91 HOH HOH . K 6 HOH A 46 746 92 HOH HOH . K 6 HOH A 47 747 94 HOH HOH . K 6 HOH A 48 748 95 HOH HOH . K 6 HOH A 49 749 99 HOH HOH . K 6 HOH A 50 750 100 HOH HOH . K 6 HOH A 51 751 102 HOH HOH . K 6 HOH A 52 752 104 HOH HOH . K 6 HOH A 53 753 105 HOH HOH . K 6 HOH A 54 754 106 HOH HOH . K 6 HOH A 55 755 110 HOH HOH . K 6 HOH A 56 756 116 HOH HOH . K 6 HOH A 57 757 117 HOH HOH . K 6 HOH A 58 758 118 HOH HOH . K 6 HOH A 59 759 119 HOH HOH . K 6 HOH A 60 760 121 HOH HOH . K 6 HOH A 61 761 123 HOH HOH . K 6 HOH A 62 762 124 HOH HOH . K 6 HOH A 63 763 125 HOH HOH . K 6 HOH A 64 764 126 HOH HOH . K 6 HOH A 65 765 127 HOH HOH . K 6 HOH A 66 766 128 HOH HOH . K 6 HOH A 67 767 132 HOH HOH . K 6 HOH A 68 768 135 HOH HOH . K 6 HOH A 69 769 138 HOH HOH . K 6 HOH A 70 770 139 HOH HOH . K 6 HOH A 71 771 144 HOH HOH . K 6 HOH A 72 772 145 HOH HOH . K 6 HOH A 73 773 147 HOH HOH . K 6 HOH A 74 774 150 HOH HOH . K 6 HOH A 75 775 151 HOH HOH . K 6 HOH A 76 776 153 HOH HOH . K 6 HOH A 77 777 154 HOH HOH . K 6 HOH A 78 778 158 HOH HOH . K 6 HOH A 79 779 159 HOH HOH . K 6 HOH A 80 780 160 HOH HOH . K 6 HOH A 81 781 161 HOH HOH . K 6 HOH A 82 782 162 HOH HOH . K 6 HOH A 83 783 163 HOH HOH . K 6 HOH A 84 784 166 HOH HOH . K 6 HOH A 85 785 168 HOH HOH . K 6 HOH A 86 786 169 HOH HOH . K 6 HOH A 87 787 170 HOH HOH . K 6 HOH A 88 788 172 HOH HOH . K 6 HOH A 89 789 174 HOH HOH . K 6 HOH A 90 790 175 HOH HOH . K 6 HOH A 91 791 176 HOH HOH . K 6 HOH A 92 792 180 HOH HOH . K 6 HOH A 93 793 183 HOH HOH . K 6 HOH A 94 794 184 HOH HOH . K 6 HOH A 95 795 185 HOH HOH . K 6 HOH A 96 796 186 HOH HOH . K 6 HOH A 97 797 188 HOH HOH . K 6 HOH A 98 798 190 HOH HOH . K 6 HOH A 99 799 193 HOH HOH . K 6 HOH A 100 800 194 HOH HOH . K 6 HOH A 101 801 196 HOH HOH . K 6 HOH A 102 802 197 HOH HOH . K 6 HOH A 103 803 199 HOH HOH . K 6 HOH A 104 804 201 HOH HOH . K 6 HOH A 105 805 203 HOH HOH . K 6 HOH A 106 806 204 HOH HOH . K 6 HOH A 107 807 205 HOH HOH . K 6 HOH A 108 808 210 HOH HOH . K 6 HOH A 109 809 212 HOH HOH . K 6 HOH A 110 810 213 HOH HOH . K 6 HOH A 111 811 215 HOH HOH . K 6 HOH A 112 812 217 HOH HOH . K 6 HOH A 113 813 218 HOH HOH . K 6 HOH A 114 814 219 HOH HOH . K 6 HOH A 115 815 227 HOH HOH . K 6 HOH A 116 816 229 HOH HOH . K 6 HOH A 117 817 230 HOH HOH . K 6 HOH A 118 818 231 HOH HOH . K 6 HOH A 119 819 232 HOH HOH . K 6 HOH A 120 820 233 HOH HOH . K 6 HOH A 121 821 237 HOH HOH . K 6 HOH A 122 822 238 HOH HOH . K 6 HOH A 123 823 239 HOH HOH . K 6 HOH A 124 824 241 HOH HOH . K 6 HOH A 125 825 242 HOH HOH . K 6 HOH A 126 826 245 HOH HOH . K 6 HOH A 127 827 246 HOH HOH . K 6 HOH A 128 828 247 HOH HOH . K 6 HOH A 129 829 248 HOH HOH . K 6 HOH A 130 830 252 HOH HOH . K 6 HOH A 131 831 253 HOH HOH . K 6 HOH A 132 832 255 HOH HOH . K 6 HOH A 133 833 256 HOH HOH . K 6 HOH A 134 834 257 HOH HOH . K 6 HOH A 135 835 261 HOH HOH . K 6 HOH A 136 836 263 HOH HOH . K 6 HOH A 137 837 264 HOH HOH . K 6 HOH A 138 838 266 HOH HOH . K 6 HOH A 139 839 273 HOH HOH . K 6 HOH A 140 840 274 HOH HOH . K 6 HOH A 141 841 279 HOH HOH . K 6 HOH A 142 842 280 HOH HOH . K 6 HOH A 143 843 281 HOH HOH . K 6 HOH A 144 844 282 HOH HOH . K 6 HOH A 145 845 283 HOH HOH . K 6 HOH A 146 846 284 HOH HOH . K 6 HOH A 147 847 285 HOH HOH . K 6 HOH A 148 848 286 HOH HOH . K 6 HOH A 149 849 288 HOH HOH . L 6 HOH B 1 701 1 HOH HOH . L 6 HOH B 2 702 3 HOH HOH . L 6 HOH B 3 703 4 HOH HOH . L 6 HOH B 4 704 6 HOH HOH . L 6 HOH B 5 705 9 HOH HOH . L 6 HOH B 6 706 12 HOH HOH . L 6 HOH B 7 707 16 HOH HOH . L 6 HOH B 8 708 21 HOH HOH . L 6 HOH B 9 709 22 HOH HOH . L 6 HOH B 10 710 24 HOH HOH . L 6 HOH B 11 711 25 HOH HOH . L 6 HOH B 12 712 29 HOH HOH . L 6 HOH B 13 713 33 HOH HOH . L 6 HOH B 14 714 36 HOH HOH . L 6 HOH B 15 715 38 HOH HOH . L 6 HOH B 16 716 42 HOH HOH . L 6 HOH B 17 717 43 HOH HOH . L 6 HOH B 18 718 44 HOH HOH . L 6 HOH B 19 719 45 HOH HOH . L 6 HOH B 20 720 46 HOH HOH . L 6 HOH B 21 721 47 HOH HOH . L 6 HOH B 22 722 48 HOH HOH . L 6 HOH B 23 723 49 HOH HOH . L 6 HOH B 24 724 50 HOH HOH . L 6 HOH B 25 725 53 HOH HOH . L 6 HOH B 26 726 54 HOH HOH . L 6 HOH B 27 727 56 HOH HOH . L 6 HOH B 28 728 57 HOH HOH . L 6 HOH B 29 729 59 HOH HOH . L 6 HOH B 30 730 60 HOH HOH . L 6 HOH B 31 731 67 HOH HOH . L 6 HOH B 32 732 68 HOH HOH . L 6 HOH B 33 733 70 HOH HOH . L 6 HOH B 34 734 71 HOH HOH . L 6 HOH B 35 735 74 HOH HOH . L 6 HOH B 36 736 79 HOH HOH . L 6 HOH B 37 737 80 HOH HOH . L 6 HOH B 38 738 84 HOH HOH . L 6 HOH B 39 739 85 HOH HOH . L 6 HOH B 40 740 86 HOH HOH . L 6 HOH B 41 741 87 HOH HOH . L 6 HOH B 42 742 88 HOH HOH . L 6 HOH B 43 743 93 HOH HOH . L 6 HOH B 44 744 96 HOH HOH . L 6 HOH B 45 745 97 HOH HOH . L 6 HOH B 46 746 98 HOH HOH . L 6 HOH B 47 747 101 HOH HOH . L 6 HOH B 48 748 103 HOH HOH . L 6 HOH B 49 749 107 HOH HOH . L 6 HOH B 50 750 108 HOH HOH . L 6 HOH B 51 751 109 HOH HOH . L 6 HOH B 52 752 111 HOH HOH . L 6 HOH B 53 753 112 HOH HOH . L 6 HOH B 54 754 113 HOH HOH . L 6 HOH B 55 755 114 HOH HOH . L 6 HOH B 56 756 115 HOH HOH . L 6 HOH B 57 757 120 HOH HOH . L 6 HOH B 58 758 129 HOH HOH . L 6 HOH B 59 759 130 HOH HOH . L 6 HOH B 60 760 131 HOH HOH . L 6 HOH B 61 761 133 HOH HOH . L 6 HOH B 62 762 134 HOH HOH . L 6 HOH B 63 763 136 HOH HOH . L 6 HOH B 64 764 137 HOH HOH . L 6 HOH B 65 765 140 HOH HOH . L 6 HOH B 66 766 141 HOH HOH . L 6 HOH B 67 767 142 HOH HOH . L 6 HOH B 68 768 143 HOH HOH . L 6 HOH B 69 769 146 HOH HOH . L 6 HOH B 70 770 148 HOH HOH . L 6 HOH B 71 771 149 HOH HOH . L 6 HOH B 72 772 152 HOH HOH . L 6 HOH B 73 773 155 HOH HOH . L 6 HOH B 74 774 156 HOH HOH . L 6 HOH B 75 775 157 HOH HOH . L 6 HOH B 76 776 164 HOH HOH . L 6 HOH B 77 777 171 HOH HOH . L 6 HOH B 78 778 173 HOH HOH . L 6 HOH B 79 779 177 HOH HOH . L 6 HOH B 80 780 178 HOH HOH . L 6 HOH B 81 781 179 HOH HOH . L 6 HOH B 82 782 181 HOH HOH . L 6 HOH B 83 783 182 HOH HOH . L 6 HOH B 84 784 187 HOH HOH . L 6 HOH B 85 785 191 HOH HOH . L 6 HOH B 86 786 192 HOH HOH . L 6 HOH B 87 787 195 HOH HOH . L 6 HOH B 88 788 198 HOH HOH . L 6 HOH B 89 789 200 HOH HOH . L 6 HOH B 90 790 202 HOH HOH . L 6 HOH B 91 791 206 HOH HOH . L 6 HOH B 92 792 209 HOH HOH . L 6 HOH B 93 793 211 HOH HOH . L 6 HOH B 94 794 216 HOH HOH . L 6 HOH B 95 795 220 HOH HOH . L 6 HOH B 96 796 221 HOH HOH . L 6 HOH B 97 797 222 HOH HOH . L 6 HOH B 98 798 223 HOH HOH . L 6 HOH B 99 799 224 HOH HOH . L 6 HOH B 100 800 225 HOH HOH . L 6 HOH B 101 801 226 HOH HOH . L 6 HOH B 102 802 228 HOH HOH . L 6 HOH B 103 803 234 HOH HOH . L 6 HOH B 104 804 235 HOH HOH . L 6 HOH B 105 805 236 HOH HOH . L 6 HOH B 106 806 240 HOH HOH . L 6 HOH B 107 807 243 HOH HOH . L 6 HOH B 108 808 244 HOH HOH . L 6 HOH B 109 809 249 HOH HOH . L 6 HOH B 110 810 250 HOH HOH . L 6 HOH B 111 811 251 HOH HOH . L 6 HOH B 112 812 254 HOH HOH . L 6 HOH B 113 813 258 HOH HOH . L 6 HOH B 114 814 259 HOH HOH . L 6 HOH B 115 815 262 HOH HOH . L 6 HOH B 116 816 265 HOH HOH . L 6 HOH B 117 817 267 HOH HOH . L 6 HOH B 118 818 268 HOH HOH . L 6 HOH B 119 819 269 HOH HOH . L 6 HOH B 120 820 270 HOH HOH . L 6 HOH B 121 821 271 HOH HOH . L 6 HOH B 122 822 272 HOH HOH . L 6 HOH B 123 823 275 HOH HOH . L 6 HOH B 124 824 276 HOH HOH . L 6 HOH B 125 825 277 HOH HOH . L 6 HOH B 126 826 278 HOH HOH . L 6 HOH B 127 827 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 1.656 6.376 6.588 1 32.88 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 1.034 5.15 6.999 1 31.04 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 1.009 7.571 7.301 1 33.8 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 1.781 8.781 7.155 1 33.16 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 -0.369 7.787 6.694 1 32.71 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 -0.229 8.438 5.436 1 31.17 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #