data_4KQV
#
_model_server_result.job_id            rciaJVY9rWzbwl3ckTS-9w 
_model_server_result.datetime_utc      '2025-01-10 15:48:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":403}' 
#
_entry.id    4KQV 
#
_exptl.entry_id    4KQV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              434.469 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.81 
_cell.angle_gamma         90 
_cell.entry_id            4KQV 
_cell.length_a            44.2 
_cell.length_b            163.16 
_cell.length_c            72.28 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KQV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,M 1 1 
B,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H23 F N8 O' 
_chem_comp.formula_weight    434.469 
_chem_comp.id                DOO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 N31 DOO sing 83 n n 
F30 C6 DOO sing 84 n n 
C1 C6 DOO doub 85 n y 
C1 C2 DOO sing 86 n y 
N31 C2 DOO sing 87 n n 
C6 C5 DOO sing 88 n y 
C2 C3 DOO doub 89 n y 
C5 C4 DOO doub 90 n y 
C3 C4 DOO sing 91 n y 
C3 N9 DOO sing 92 n y 
C4 C7 DOO sing 93 n y 
N9 C8 DOO sing 94 n y 
C7 C8 DOO doub 95 n y 
C7 C13 DOO sing 96 n y 
C8 N10 DOO sing 97 n y 
C23 N22 DOO sing 98 n n 
C23 C24 DOO sing 99 n n 
C13 N22 DOO sing 100 n n 
C13 N12 DOO doub 101 n y 
N22 C26 DOO sing 102 n n 
N10 C11 DOO doub 103 n y 
C26 C25 DOO sing 104 n n 
N12 C11 DOO sing 105 n y 
C11 O14 DOO sing 106 n n 
C24 C25 DOO sing 107 n n 
C24 N29 DOO sing 108 n n 
C25 C27 DOO sing 109 n n 
O14 C15 DOO sing 110 n n 
N29 C28 DOO sing 111 n n 
C20 C15 DOO doub 112 n y 
C20 N19 DOO sing 113 n y 
C15 C16 DOO sing 114 n y 
C27 C28 DOO sing 115 n n 
N19 C18 DOO doub 116 n y 
C16 N17 DOO doub 117 n y 
C18 N17 DOO sing 118 n y 
C18 C21 DOO sing 119 n n 
C1 H1 DOO sing 120 n n 
C5 H2 DOO sing 121 n n 
C26 H3 DOO sing 122 n n 
C26 H4 DOO sing 123 n n 
C25 H5 DOO sing 124 n n 
C27 H6 DOO sing 125 n n 
C27 H7 DOO sing 126 n n 
C28 H8 DOO sing 127 n n 
C28 H9 DOO sing 128 n n 
N29 H10 DOO sing 129 n n 
C24 H12 DOO sing 130 n n 
C23 H13 DOO sing 131 n n 
C23 H14 DOO sing 132 n n 
N9 H15 DOO sing 133 n n 
N31 H16 DOO sing 134 n n 
C32 H17 DOO sing 135 n n 
C32 H18 DOO sing 136 n n 
C32 H19 DOO sing 137 n n 
C20 H20 DOO sing 138 n n 
C21 H21 DOO sing 139 n n 
C21 H22 DOO sing 140 n n 
C21 H23 DOO sing 141 n n 
C16 H24 DOO sing 142 n n 
#
_atom_sites.entry_id                     4KQV 
_atom_sites.fract_transf_matrix[1][1]    0.022624 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000715 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IOD A 1 401 1 IOD IOD . 
D 2 IOD A 1 402 4 IOD IOD . 
E 3 DOO A 1 403 1 DOO DOO . 
F 2 IOD A 1 404 1 IOD IOD . 
G 2 IOD A 1 405 1 IOD IOD . 
H 2 IOD A 1 406 1 IOD IOD . 
I 2 IOD A 1 407 1 IOD IOD . 
J 2 IOD B 1 401 2 IOD IOD . 
K 2 IOD B 1 402 1 IOD IOD . 
L 3 DOO B 1 403 1 DOO DOO . 
M 4 HOH A 1 501 1 HOH HOH . 
M 4 HOH A 2 502 3 HOH HOH . 
M 4 HOH A 3 503 4 HOH HOH . 
M 4 HOH A 4 504 5 HOH HOH . 
M 4 HOH A 5 505 8 HOH HOH . 
M 4 HOH A 6 506 9 HOH HOH . 
M 4 HOH A 7 507 10 HOH HOH . 
M 4 HOH A 8 508 11 HOH HOH . 
M 4 HOH A 9 509 12 HOH HOH . 
M 4 HOH A 10 510 14 HOH HOH . 
M 4 HOH A 11 511 15 HOH HOH . 
M 4 HOH A 12 512 16 HOH HOH . 
M 4 HOH A 13 513 17 HOH HOH . 
M 4 HOH A 14 514 18 HOH HOH . 
M 4 HOH A 15 515 19 HOH HOH . 
M 4 HOH A 16 516 20 HOH HOH . 
M 4 HOH A 17 517 21 HOH HOH . 
M 4 HOH A 18 518 22 HOH HOH . 
M 4 HOH A 19 519 23 HOH HOH . 
M 4 HOH A 20 520 24 HOH HOH . 
M 4 HOH A 21 521 25 HOH HOH . 
M 4 HOH A 22 522 26 HOH HOH . 
M 4 HOH A 23 523 27 HOH HOH . 
M 4 HOH A 24 524 28 HOH HOH . 
M 4 HOH A 25 525 30 HOH HOH . 
M 4 HOH A 26 526 31 HOH HOH . 
M 4 HOH A 27 527 32 HOH HOH . 
M 4 HOH A 28 528 33 HOH HOH . 
M 4 HOH A 29 529 34 HOH HOH . 
M 4 HOH A 30 530 37 HOH HOH . 
M 4 HOH A 31 531 38 HOH HOH . 
M 4 HOH A 32 532 39 HOH HOH . 
M 4 HOH A 33 533 42 HOH HOH . 
M 4 HOH A 34 534 43 HOH HOH . 
M 4 HOH A 35 535 44 HOH HOH . 
M 4 HOH A 36 536 46 HOH HOH . 
M 4 HOH A 37 537 47 HOH HOH . 
M 4 HOH A 38 538 48 HOH HOH . 
M 4 HOH A 39 539 49 HOH HOH . 
M 4 HOH A 40 540 50 HOH HOH . 
M 4 HOH A 41 541 51 HOH HOH . 
M 4 HOH A 42 542 52 HOH HOH . 
M 4 HOH A 43 543 53 HOH HOH . 
M 4 HOH A 44 544 54 HOH HOH . 
M 4 HOH A 45 545 55 HOH HOH . 
M 4 HOH A 46 546 57 HOH HOH . 
M 4 HOH A 47 547 58 HOH HOH . 
M 4 HOH A 48 548 59 HOH HOH . 
M 4 HOH A 49 549 60 HOH HOH . 
M 4 HOH A 50 550 61 HOH HOH . 
M 4 HOH A 51 551 62 HOH HOH . 
M 4 HOH A 52 552 63 HOH HOH . 
M 4 HOH A 53 553 64 HOH HOH . 
M 4 HOH A 54 554 65 HOH HOH . 
M 4 HOH A 55 555 66 HOH HOH . 
M 4 HOH A 56 556 67 HOH HOH . 
M 4 HOH A 57 557 69 HOH HOH . 
M 4 HOH A 58 558 70 HOH HOH . 
M 4 HOH A 59 559 71 HOH HOH . 
M 4 HOH A 60 560 72 HOH HOH . 
M 4 HOH A 61 561 73 HOH HOH . 
M 4 HOH A 62 562 74 HOH HOH . 
M 4 HOH A 63 563 75 HOH HOH . 
M 4 HOH A 64 564 76 HOH HOH . 
M 4 HOH A 65 565 77 HOH HOH . 
M 4 HOH A 66 566 78 HOH HOH . 
M 4 HOH A 67 567 79 HOH HOH . 
M 4 HOH A 68 568 80 HOH HOH . 
M 4 HOH A 69 569 81 HOH HOH . 
M 4 HOH A 70 570 82 HOH HOH . 
M 4 HOH A 71 571 83 HOH HOH . 
M 4 HOH A 72 572 84 HOH HOH . 
M 4 HOH A 73 573 85 HOH HOH . 
M 4 HOH A 74 574 86 HOH HOH . 
M 4 HOH A 75 575 87 HOH HOH . 
M 4 HOH A 76 576 88 HOH HOH . 
M 4 HOH A 77 577 89 HOH HOH . 
M 4 HOH A 78 578 90 HOH HOH . 
M 4 HOH A 79 579 91 HOH HOH . 
M 4 HOH A 80 580 92 HOH HOH . 
M 4 HOH A 81 581 93 HOH HOH . 
M 4 HOH A 82 582 94 HOH HOH . 
M 4 HOH A 83 583 95 HOH HOH . 
M 4 HOH A 84 584 96 HOH HOH . 
M 4 HOH A 85 585 102 HOH HOH . 
M 4 HOH A 86 586 103 HOH HOH . 
M 4 HOH A 87 587 104 HOH HOH . 
M 4 HOH A 88 588 105 HOH HOH . 
M 4 HOH A 89 589 106 HOH HOH . 
M 4 HOH A 90 590 107 HOH HOH . 
M 4 HOH A 91 591 108 HOH HOH . 
M 4 HOH A 92 592 109 HOH HOH . 
M 4 HOH A 93 593 110 HOH HOH . 
M 4 HOH A 94 594 111 HOH HOH . 
M 4 HOH A 95 595 112 HOH HOH . 
M 4 HOH A 96 596 113 HOH HOH . 
M 4 HOH A 97 597 115 HOH HOH . 
M 4 HOH A 98 598 116 HOH HOH . 
M 4 HOH A 99 599 117 HOH HOH . 
M 4 HOH A 100 600 118 HOH HOH . 
M 4 HOH A 101 601 119 HOH HOH . 
M 4 HOH A 102 602 120 HOH HOH . 
M 4 HOH A 103 603 121 HOH HOH . 
M 4 HOH A 104 604 122 HOH HOH . 
M 4 HOH A 105 605 123 HOH HOH . 
M 4 HOH A 106 606 124 HOH HOH . 
M 4 HOH A 107 607 125 HOH HOH . 
N 4 HOH B 1 501 2 HOH HOH . 
N 4 HOH B 2 502 6 HOH HOH . 
N 4 HOH B 3 503 7 HOH HOH . 
N 4 HOH B 4 504 13 HOH HOH . 
N 4 HOH B 5 505 29 HOH HOH . 
N 4 HOH B 6 506 35 HOH HOH . 
N 4 HOH B 7 507 36 HOH HOH . 
N 4 HOH B 8 508 40 HOH HOH . 
N 4 HOH B 9 509 41 HOH HOH . 
N 4 HOH B 10 510 45 HOH HOH . 
N 4 HOH B 11 511 56 HOH HOH . 
N 4 HOH B 12 512 68 HOH HOH . 
N 4 HOH B 13 513 97 HOH HOH . 
N 4 HOH B 14 514 98 HOH HOH . 
N 4 HOH B 15 515 99 HOH HOH . 
N 4 HOH B 16 516 100 HOH HOH . 
N 4 HOH B 17 517 101 HOH HOH . 
N 4 HOH B 18 518 114 HOH HOH . 
N 4 HOH B 19 519 126 HOH HOH . 
N 4 HOH B 20 520 127 HOH HOH . 
N 4 HOH B 21 521 128 HOH HOH . 
N 4 HOH B 22 522 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F30 DOO . . . L 3 -14.433 -23.841 -4.299 1 64.95 ? F30 DOO 403 B 1 
HETATM 2 C C6 DOO . . . L 3 -13.913 -25.008 -3.906 1 61.77 ? C6 DOO 403 B 1 
HETATM 3 C C1 DOO . . . L 3 -12.534 -25.184 -4.067 1 59.8 ? C1 DOO 403 B 1 
HETATM 4 C C5 DOO . . . L 3 -14.756 -25.989 -3.359 1 64.24 ? C5 DOO 403 B 1 
HETATM 5 C C4 DOO . . . L 3 -14.192 -27.196 -2.959 1 62.63 ? C4 DOO 403 B 1 
HETATM 6 C C7 DOO . . . L 3 -14.752 -28.421 -2.369 1 62.4 ? C7 DOO 403 B 1 
HETATM 7 C C13 DOO . . . L 3 -16.106 -28.919 -1.948 1 61.85 ? C13 DOO 403 B 1 
HETATM 8 N N22 DOO . . . L 3 -17.334 -28.225 -1.946 1 58.47 ? N22 DOO 403 B 1 
HETATM 9 C C26 DOO . . . L 3 -18.616 -28.914 -1.952 1 52.57 ? C26 DOO 403 B 1 
HETATM 10 C C25 DOO . . . L 3 -19.219 -28.213 -0.741 1 53.86 ? C25 DOO 403 B 1 
HETATM 11 C C27 DOO . . . L 3 -18.92 -28.972 0.555 1 48.2 ? C27 DOO 403 B 1 
HETATM 12 C C28 DOO . . . L 3 -18.297 -27.948 1.507 1 51.05 ? C28 DOO 403 B 1 
HETATM 13 N N29 DOO . . . L 3 -18.025 -26.768 0.718 1 47.37 ? N29 DOO 403 B 1 
HETATM 14 C C24 DOO . . . L 3 -18.55 -26.842 -0.635 1 53.41 ? C24 DOO 403 B 1 
HETATM 15 C C23 DOO . . . L 3 -17.445 -26.796 -1.691 1 52.45 ? C23 DOO 403 B 1 
HETATM 16 N N12 DOO . . . L 3 -16.129 -30.177 -1.421 1 65.53 ? N12 DOO 403 B 1 
HETATM 17 C C11 DOO . . . L 3 -15.025 -30.962 -1.296 1 66.08 ? C11 DOO 403 B 1 
HETATM 18 N N10 DOO . . . L 3 -13.796 -30.543 -1.674 1 65.43 ? N10 DOO 403 B 1 
HETATM 19 C C8 DOO . . . L 3 -13.595 -29.321 -2.206 1 63.84 ? C8 DOO 403 B 1 
HETATM 20 N N9 DOO . . . L 3 -12.485 -28.681 -2.658 1 63.93 ? N9 DOO 403 B 1 
HETATM 21 C C3 DOO . . . L 3 -12.74 -27.435 -3.116 1 62.52 ? C3 DOO 403 B 1 
HETATM 22 C C2 DOO . . . L 3 -11.894 -26.361 -3.693 1 60.41 ? C2 DOO 403 B 1 
HETATM 23 N N31 DOO . . . L 3 -10.562 -26.558 -3.847 1 60.94 ? N31 DOO 403 B 1 
HETATM 24 C C32 DOO . . . L 3 -9.643 -25.473 -4.131 1 59.28 ? C32 DOO 403 B 1 
HETATM 25 O O14 DOO . . . L 3 -15.102 -32.224 -0.773 1 66.54 ? O14 DOO 403 B 1 
HETATM 26 C C15 DOO . . . L 3 -16.284 -32.855 -0.496 1 71.65 ? C15 DOO 403 B 1 
HETATM 27 C C20 DOO . . . L 3 -16.988 -32.532 0.656 1 67.35 ? C20 DOO 403 B 1 
HETATM 28 N N19 DOO . . . L 3 -18.132 -33.165 0.92 1 71.75 ? N19 DOO 403 B 1 
HETATM 29 C C18 DOO . . . L 3 -18.611 -34.115 0.084 1 73.23 ? C18 DOO 403 B 1 
HETATM 30 C C21 DOO . . . L 3 -19.91 -34.803 0.416 1 69.5 ? C21 DOO 403 B 1 
HETATM 31 N N17 DOO . . . L 3 -17.933 -34.443 -1.045 1 73.22 ? N17 DOO 403 B 1 
HETATM 32 C C16 DOO . . . L 3 -16.777 -33.838 -1.351 1 70.39 ? C16 DOO 403 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           32 
#