data_4KQZ
#
_model_server_result.job_id            RPYRgre5sW118kixNn-uAQ 
_model_server_result.datetime_utc      '2024-12-27 05:33:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kqz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4KQZ 
#
_exptl.entry_id    4KQZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KQZ 
_cell.length_a            46.977 
_cell.length_b            108.473 
_cell.length_c            125.925 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KQZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 383 1_555 A SG CYS 46 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 64 A CYS 425 1_555 A SG CYS 117 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 76 A CYS 437 1_555 A SG CYS 224 A CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 142 A CYS 503 1_555 A SG CYS 165 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 22 B CYS 383 1_555 B SG CYS 46 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf6 B SG CYS 64 B CYS 425 1_555 B SG CYS 117 B CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf7 B SG CYS 76 B CYS 437 1_555 B SG CYS 224 B CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 B SG CYS 142 B CYS 503 1_555 B SG CYS 165 B CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 49 A ASN 410 1_555 C C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 B ND2 ASN 49 B ASN 410 1_555 D C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4KQZ 
_atom_sites.fract_transf_matrix[1][1]    0.021287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 701 301 NAG NAG . 
D 2 NAG B 1 701 301 NAG NAG . 
E 3 HOH A 1 801 1 HOH HOH . 
E 3 HOH A 2 802 3 HOH HOH . 
E 3 HOH A 3 803 4 HOH HOH . 
E 3 HOH A 4 804 5 HOH HOH . 
E 3 HOH A 5 805 6 HOH HOH . 
E 3 HOH A 6 806 9 HOH HOH . 
E 3 HOH A 7 807 11 HOH HOH . 
E 3 HOH A 8 808 13 HOH HOH . 
E 3 HOH A 9 809 14 HOH HOH . 
E 3 HOH A 10 810 15 HOH HOH . 
E 3 HOH A 11 811 17 HOH HOH . 
E 3 HOH A 12 812 18 HOH HOH . 
E 3 HOH A 13 813 19 HOH HOH . 
E 3 HOH A 14 814 20 HOH HOH . 
E 3 HOH A 15 815 21 HOH HOH . 
E 3 HOH A 16 816 22 HOH HOH . 
E 3 HOH A 17 817 23 HOH HOH . 
E 3 HOH A 18 818 25 HOH HOH . 
E 3 HOH A 19 819 26 HOH HOH . 
E 3 HOH A 20 820 28 HOH HOH . 
E 3 HOH A 21 821 29 HOH HOH . 
E 3 HOH A 22 822 30 HOH HOH . 
E 3 HOH A 23 823 32 HOH HOH . 
E 3 HOH A 24 824 34 HOH HOH . 
E 3 HOH A 25 825 37 HOH HOH . 
E 3 HOH A 26 826 38 HOH HOH . 
E 3 HOH A 27 827 40 HOH HOH . 
E 3 HOH A 28 828 42 HOH HOH . 
E 3 HOH A 29 829 43 HOH HOH . 
E 3 HOH A 30 830 45 HOH HOH . 
E 3 HOH A 31 831 46 HOH HOH . 
E 3 HOH A 32 832 47 HOH HOH . 
E 3 HOH A 33 833 48 HOH HOH . 
E 3 HOH A 34 834 49 HOH HOH . 
E 3 HOH A 35 835 50 HOH HOH . 
E 3 HOH A 36 836 52 HOH HOH . 
E 3 HOH A 37 837 53 HOH HOH . 
E 3 HOH A 38 838 56 HOH HOH . 
E 3 HOH A 39 839 57 HOH HOH . 
E 3 HOH A 40 840 58 HOH HOH . 
E 3 HOH A 41 841 59 HOH HOH . 
E 3 HOH A 42 842 60 HOH HOH . 
E 3 HOH A 43 843 61 HOH HOH . 
E 3 HOH A 44 844 62 HOH HOH . 
E 3 HOH A 45 845 63 HOH HOH . 
F 3 HOH B 1 801 2 HOH HOH . 
F 3 HOH B 2 802 7 HOH HOH . 
F 3 HOH B 3 803 8 HOH HOH . 
F 3 HOH B 4 804 10 HOH HOH . 
F 3 HOH B 5 805 12 HOH HOH . 
F 3 HOH B 6 806 16 HOH HOH . 
F 3 HOH B 7 807 24 HOH HOH . 
F 3 HOH B 8 808 27 HOH HOH . 
F 3 HOH B 9 809 31 HOH HOH . 
F 3 HOH B 10 810 33 HOH HOH . 
F 3 HOH B 11 811 35 HOH HOH . 
F 3 HOH B 12 812 36 HOH HOH . 
F 3 HOH B 13 813 39 HOH HOH . 
F 3 HOH B 14 814 41 HOH HOH . 
F 3 HOH B 15 815 44 HOH HOH . 
F 3 HOH B 16 816 51 HOH HOH . 
F 3 HOH B 17 817 54 HOH HOH . 
F 3 HOH B 18 818 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 2 7.899 -71.478 -9.258 1 92.62 ? C1 NAG 701 B 1 
HETATM 2 C C2 NAG . . . D 2 7.306 -72.624 -8.446 1 95.64 ? C2 NAG 701 B 1 
HETATM 3 C C3 NAG . . . D 2 8.324 -73.136 -7.434 1 94.94 ? C3 NAG 701 B 1 
HETATM 4 C C4 NAG . . . D 2 9.609 -73.544 -8.139 1 93.57 ? C4 NAG 701 B 1 
HETATM 5 C C5 NAG . . . D 2 10.103 -72.456 -9.089 1 91.9 ? C5 NAG 701 B 1 
HETATM 6 C C6 NAG . . . D 2 11.179 -73.017 -10.014 1 91.91 ? C6 NAG 701 B 1 
HETATM 7 C C7 NAG . . . D 2 4.917 -72.736 -8.234 1 97.06 ? C7 NAG 701 B 1 
HETATM 8 C C8 NAG . . . D 2 3.772 -72.778 -7.262 1 90.91 ? C8 NAG 701 B 1 
HETATM 9 N N2 NAG . . . D 2 6.068 -72.229 -7.8 1 95.67 ? N2 NAG 701 B 1 
HETATM 10 O O3 NAG . . . D 2 7.807 -74.25 -6.741 1 90.58 ? O3 NAG 701 B 1 
HETATM 11 O O4 NAG . . . D 2 10.597 -73.833 -7.172 1 85.26 ? O4 NAG 701 B 1 
HETATM 12 O O5 NAG . . . D 2 9.068 -71.937 -9.913 1 93.03 ? O5 NAG 701 B 1 
HETATM 13 O O6 NAG . . . D 2 12.119 -73.787 -9.302 1 96.79 ? O6 NAG 701 B 1 
HETATM 14 O O7 NAG . . . D 2 4.782 -73.16 -9.382 1 96.7 ? O7 NAG 701 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#