data_4KQZ # _model_server_result.job_id 7axCnA6-nyE3GPhV_PC7tA _model_server_result.datetime_utc '2024-10-11 19:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4KQZ # _exptl.entry_id 4KQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KQZ _cell.length_a 46.977 _cell.length_b 108.473 _cell.length_c 125.925 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 383 1_555 A SG CYS 46 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 64 A CYS 425 1_555 A SG CYS 117 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 76 A CYS 437 1_555 A SG CYS 224 A CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 142 A CYS 503 1_555 A SG CYS 165 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 22 B CYS 383 1_555 B SG CYS 46 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 64 B CYS 425 1_555 B SG CYS 117 B CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 76 B CYS 437 1_555 B SG CYS 224 B CYS 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 B SG CYS 142 B CYS 503 1_555 B SG CYS 165 B CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 49 A ASN 410 1_555 C C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 49 B ASN 410 1_555 D C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4KQZ _atom_sites.fract_transf_matrix[1][1] 0.021287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 701 301 NAG NAG . D 2 NAG B 1 701 301 NAG NAG . E 3 HOH A 1 801 1 HOH HOH . E 3 HOH A 2 802 3 HOH HOH . E 3 HOH A 3 803 4 HOH HOH . E 3 HOH A 4 804 5 HOH HOH . E 3 HOH A 5 805 6 HOH HOH . E 3 HOH A 6 806 9 HOH HOH . E 3 HOH A 7 807 11 HOH HOH . E 3 HOH A 8 808 13 HOH HOH . E 3 HOH A 9 809 14 HOH HOH . E 3 HOH A 10 810 15 HOH HOH . E 3 HOH A 11 811 17 HOH HOH . E 3 HOH A 12 812 18 HOH HOH . E 3 HOH A 13 813 19 HOH HOH . E 3 HOH A 14 814 20 HOH HOH . E 3 HOH A 15 815 21 HOH HOH . E 3 HOH A 16 816 22 HOH HOH . E 3 HOH A 17 817 23 HOH HOH . E 3 HOH A 18 818 25 HOH HOH . E 3 HOH A 19 819 26 HOH HOH . E 3 HOH A 20 820 28 HOH HOH . E 3 HOH A 21 821 29 HOH HOH . E 3 HOH A 22 822 30 HOH HOH . E 3 HOH A 23 823 32 HOH HOH . E 3 HOH A 24 824 34 HOH HOH . E 3 HOH A 25 825 37 HOH HOH . E 3 HOH A 26 826 38 HOH HOH . E 3 HOH A 27 827 40 HOH HOH . E 3 HOH A 28 828 42 HOH HOH . E 3 HOH A 29 829 43 HOH HOH . E 3 HOH A 30 830 45 HOH HOH . E 3 HOH A 31 831 46 HOH HOH . E 3 HOH A 32 832 47 HOH HOH . E 3 HOH A 33 833 48 HOH HOH . E 3 HOH A 34 834 49 HOH HOH . E 3 HOH A 35 835 50 HOH HOH . E 3 HOH A 36 836 52 HOH HOH . E 3 HOH A 37 837 53 HOH HOH . E 3 HOH A 38 838 56 HOH HOH . E 3 HOH A 39 839 57 HOH HOH . E 3 HOH A 40 840 58 HOH HOH . E 3 HOH A 41 841 59 HOH HOH . E 3 HOH A 42 842 60 HOH HOH . E 3 HOH A 43 843 61 HOH HOH . E 3 HOH A 44 844 62 HOH HOH . E 3 HOH A 45 845 63 HOH HOH . F 3 HOH B 1 801 2 HOH HOH . F 3 HOH B 2 802 7 HOH HOH . F 3 HOH B 3 803 8 HOH HOH . F 3 HOH B 4 804 10 HOH HOH . F 3 HOH B 5 805 12 HOH HOH . F 3 HOH B 6 806 16 HOH HOH . F 3 HOH B 7 807 24 HOH HOH . F 3 HOH B 8 808 27 HOH HOH . F 3 HOH B 9 809 31 HOH HOH . F 3 HOH B 10 810 33 HOH HOH . F 3 HOH B 11 811 35 HOH HOH . F 3 HOH B 12 812 36 HOH HOH . F 3 HOH B 13 813 39 HOH HOH . F 3 HOH B 14 814 41 HOH HOH . F 3 HOH B 15 815 44 HOH HOH . F 3 HOH B 16 816 51 HOH HOH . F 3 HOH B 17 817 54 HOH HOH . F 3 HOH B 18 818 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 7.899 -71.478 -9.258 1 92.62 ? C1 NAG 701 B 1 HETATM 2 C C2 NAG . . . D 2 7.306 -72.624 -8.446 1 95.64 ? C2 NAG 701 B 1 HETATM 3 C C3 NAG . . . D 2 8.324 -73.136 -7.434 1 94.94 ? C3 NAG 701 B 1 HETATM 4 C C4 NAG . . . D 2 9.609 -73.544 -8.139 1 93.57 ? C4 NAG 701 B 1 HETATM 5 C C5 NAG . . . D 2 10.103 -72.456 -9.089 1 91.9 ? C5 NAG 701 B 1 HETATM 6 C C6 NAG . . . D 2 11.179 -73.017 -10.014 1 91.91 ? C6 NAG 701 B 1 HETATM 7 C C7 NAG . . . D 2 4.917 -72.736 -8.234 1 97.06 ? C7 NAG 701 B 1 HETATM 8 C C8 NAG . . . D 2 3.772 -72.778 -7.262 1 90.91 ? C8 NAG 701 B 1 HETATM 9 N N2 NAG . . . D 2 6.068 -72.229 -7.8 1 95.67 ? N2 NAG 701 B 1 HETATM 10 O O3 NAG . . . D 2 7.807 -74.25 -6.741 1 90.58 ? O3 NAG 701 B 1 HETATM 11 O O4 NAG . . . D 2 10.597 -73.833 -7.172 1 85.26 ? O4 NAG 701 B 1 HETATM 12 O O5 NAG . . . D 2 9.068 -71.937 -9.913 1 93.03 ? O5 NAG 701 B 1 HETATM 13 O O6 NAG . . . D 2 12.119 -73.787 -9.302 1 96.79 ? O6 NAG 701 B 1 HETATM 14 O O7 NAG . . . D 2 4.782 -73.16 -9.382 1 96.7 ? O7 NAG 701 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #