data_4KS8 # _model_server_result.job_id GQMYEiRw0LYKqjSWhDq-Zg _model_server_result.datetime_utc '2024-10-11 03:24:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ks8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4KS8 # _exptl.entry_id 4KS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KS8 _cell.length_a 49.616 _cell.length_b 60.099 _cell.length_c 99.979 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 177 A LYS 559 1_555 A N SEP 178 A SEP 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 178 A SEP 560 1_555 A N LEU 179 A LEU 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 70 n n C4 H4 B49 sing 71 n n C4 H4A B49 sing 72 n n C4 H4B B49 sing 73 n n C5 C6 B49 doub 74 n y C5 C15 B49 sing 75 n y C5 H5 B49 sing 76 n n C6 C16 B49 sing 77 n y C6 H6 B49 sing 78 n n C7 C15 B49 doub 79 n y C7 C17 B49 sing 80 n y C7 H7 B49 sing 81 n n C13 C3 B49 sing 82 n n C13 C18 B49 doub 83 n y C13 C19 B49 sing 84 n y C15 F29 B49 sing 85 n n C17 C20 B49 sing 86 n n C17 C16 B49 doub 87 n y C20 C21 B49 sing 88 n n C20 C12 B49 doub 89 z n C21 N24 B49 sing 90 n n C21 O27 B49 doub 91 n n C22 C19 B49 sing 92 n n C22 N25 B49 sing 93 n n C22 O28 B49 doub 94 n n C3 H3 B49 sing 95 n n C3 H3A B49 sing 96 n n C3 H3B B49 sing 97 n n C12 C18 B49 sing 98 n n C12 H12 B49 sing 99 n n C14 C19 B49 doub 100 n y C14 N23 B49 sing 101 n y C16 N24 B49 sing 102 n n C18 N23 B49 sing 103 n y N23 HN23 B49 sing 104 n n N24 HN24 B49 sing 105 n n N25 HN25 B49 sing 106 n n N25 C37 B49 sing 107 n n C37 C38 B49 sing 108 n n C38 N4 B49 sing 109 n n N4 C39 B49 sing 110 n n N4 C40 B49 sing 111 n n C40 C41 B49 sing 112 n n C39 C42 B49 sing 113 n n C37 H14 B49 sing 114 n n C37 H15 B49 sing 115 n n C38 H16 B49 sing 116 n n C38 H17 B49 sing 117 n n C39 H18 B49 sing 118 n n C39 H19 B49 sing 119 n n C40 H20 B49 sing 120 n n C40 H21 B49 sing 121 n n C41 H22 B49 sing 122 n n C41 H23 B49 sing 123 n n C41 H24 B49 sing 124 n n C42 H25 B49 sing 125 n n C42 H26 B49 sing 126 n n C42 H27 B49 sing 127 n n # _atom_sites.entry_id 4KS8 _atom_sites.fract_transf_matrix[1][1] 0.020155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B49 A 1 701 1 B49 B49 . C 3 HOH A 1 801 1 HOH HOH . C 3 HOH A 2 802 2 HOH HOH . C 3 HOH A 3 803 3 HOH HOH . C 3 HOH A 4 804 4 HOH HOH . C 3 HOH A 5 805 5 HOH HOH . C 3 HOH A 6 806 6 HOH HOH . C 3 HOH A 7 807 7 HOH HOH . C 3 HOH A 8 808 8 HOH HOH . C 3 HOH A 9 809 9 HOH HOH . C 3 HOH A 10 810 10 HOH HOH . C 3 HOH A 11 811 11 HOH HOH . C 3 HOH A 12 812 12 HOH HOH . C 3 HOH A 13 813 13 HOH HOH . C 3 HOH A 14 814 14 HOH HOH . C 3 HOH A 15 815 15 HOH HOH . C 3 HOH A 16 816 16 HOH HOH . C 3 HOH A 17 817 17 HOH HOH . C 3 HOH A 18 818 18 HOH HOH . C 3 HOH A 19 819 19 HOH HOH . C 3 HOH A 20 820 20 HOH HOH . C 3 HOH A 21 821 21 HOH HOH . C 3 HOH A 22 822 22 HOH HOH . C 3 HOH A 23 823 23 HOH HOH . C 3 HOH A 24 824 24 HOH HOH . C 3 HOH A 25 825 25 HOH HOH . C 3 HOH A 26 826 26 HOH HOH . C 3 HOH A 27 827 27 HOH HOH . C 3 HOH A 28 828 28 HOH HOH . C 3 HOH A 29 829 29 HOH HOH . C 3 HOH A 30 830 30 HOH HOH . C 3 HOH A 31 831 31 HOH HOH . C 3 HOH A 32 832 32 HOH HOH . C 3 HOH A 33 833 33 HOH HOH . C 3 HOH A 34 834 34 HOH HOH . C 3 HOH A 35 835 35 HOH HOH . C 3 HOH A 36 836 36 HOH HOH . C 3 HOH A 37 837 37 HOH HOH . C 3 HOH A 38 838 38 HOH HOH . C 3 HOH A 39 839 39 HOH HOH . C 3 HOH A 40 840 40 HOH HOH . C 3 HOH A 41 841 41 HOH HOH . C 3 HOH A 42 842 42 HOH HOH . C 3 HOH A 43 843 43 HOH HOH . C 3 HOH A 44 844 44 HOH HOH . C 3 HOH A 45 845 45 HOH HOH . C 3 HOH A 46 846 46 HOH HOH . C 3 HOH A 47 847 47 HOH HOH . C 3 HOH A 48 848 48 HOH HOH . C 3 HOH A 49 849 49 HOH HOH . C 3 HOH A 50 850 50 HOH HOH . C 3 HOH A 51 851 51 HOH HOH . C 3 HOH A 52 852 52 HOH HOH . C 3 HOH A 53 853 53 HOH HOH . C 3 HOH A 54 854 54 HOH HOH . C 3 HOH A 55 855 55 HOH HOH . C 3 HOH A 56 856 56 HOH HOH . C 3 HOH A 57 857 57 HOH HOH . C 3 HOH A 58 858 58 HOH HOH . C 3 HOH A 59 859 59 HOH HOH . C 3 HOH A 60 860 60 HOH HOH . C 3 HOH A 61 861 61 HOH HOH . C 3 HOH A 62 862 62 HOH HOH . C 3 HOH A 63 863 63 HOH HOH . C 3 HOH A 64 864 64 HOH HOH . C 3 HOH A 65 865 65 HOH HOH . C 3 HOH A 66 866 66 HOH HOH . C 3 HOH A 67 867 67 HOH HOH . C 3 HOH A 68 868 68 HOH HOH . C 3 HOH A 69 869 69 HOH HOH . C 3 HOH A 70 870 70 HOH HOH . C 3 HOH A 71 871 71 HOH HOH . C 3 HOH A 72 872 72 HOH HOH . C 3 HOH A 73 873 73 HOH HOH . C 3 HOH A 74 874 74 HOH HOH . C 3 HOH A 75 875 75 HOH HOH . C 3 HOH A 76 876 76 HOH HOH . C 3 HOH A 77 877 77 HOH HOH . C 3 HOH A 78 878 78 HOH HOH . C 3 HOH A 79 879 79 HOH HOH . C 3 HOH A 80 880 80 HOH HOH . C 3 HOH A 81 881 81 HOH HOH . C 3 HOH A 82 882 82 HOH HOH . C 3 HOH A 83 883 83 HOH HOH . C 3 HOH A 84 884 84 HOH HOH . C 3 HOH A 85 885 85 HOH HOH . C 3 HOH A 86 886 86 HOH HOH . C 3 HOH A 87 887 87 HOH HOH . C 3 HOH A 88 888 88 HOH HOH . C 3 HOH A 89 889 89 HOH HOH . C 3 HOH A 90 890 90 HOH HOH . C 3 HOH A 91 891 91 HOH HOH . C 3 HOH A 92 892 92 HOH HOH . C 3 HOH A 93 893 93 HOH HOH . C 3 HOH A 94 894 94 HOH HOH . C 3 HOH A 95 895 95 HOH HOH . C 3 HOH A 96 896 96 HOH HOH . C 3 HOH A 97 897 97 HOH HOH . C 3 HOH A 98 898 98 HOH HOH . C 3 HOH A 99 899 99 HOH HOH . C 3 HOH A 100 900 100 HOH HOH . C 3 HOH A 101 901 101 HOH HOH . C 3 HOH A 102 902 102 HOH HOH . C 3 HOH A 103 903 103 HOH HOH . C 3 HOH A 104 904 104 HOH HOH . C 3 HOH A 105 905 105 HOH HOH . C 3 HOH A 106 906 106 HOH HOH . C 3 HOH A 107 907 107 HOH HOH . C 3 HOH A 108 908 108 HOH HOH . C 3 HOH A 109 909 109 HOH HOH . C 3 HOH A 110 910 110 HOH HOH . C 3 HOH A 111 911 111 HOH HOH . C 3 HOH A 112 912 112 HOH HOH . C 3 HOH A 113 913 113 HOH HOH . C 3 HOH A 114 914 114 HOH HOH . C 3 HOH A 115 915 115 HOH HOH . C 3 HOH A 116 916 116 HOH HOH . C 3 HOH A 117 917 117 HOH HOH . C 3 HOH A 118 918 118 HOH HOH . C 3 HOH A 119 919 119 HOH HOH . C 3 HOH A 120 920 120 HOH HOH . C 3 HOH A 121 921 121 HOH HOH . C 3 HOH A 122 922 122 HOH HOH . C 3 HOH A 123 923 123 HOH HOH . C 3 HOH A 124 924 124 HOH HOH . C 3 HOH A 125 925 125 HOH HOH . C 3 HOH A 126 926 126 HOH HOH . C 3 HOH A 127 927 127 HOH HOH . C 3 HOH A 128 928 128 HOH HOH . C 3 HOH A 129 929 129 HOH HOH . C 3 HOH A 130 930 130 HOH HOH . C 3 HOH A 131 931 131 HOH HOH . C 3 HOH A 132 932 132 HOH HOH . C 3 HOH A 133 933 133 HOH HOH . C 3 HOH A 134 934 134 HOH HOH . C 3 HOH A 135 935 135 HOH HOH . C 3 HOH A 136 936 136 HOH HOH . C 3 HOH A 137 937 137 HOH HOH . C 3 HOH A 138 938 138 HOH HOH . C 3 HOH A 139 939 139 HOH HOH . C 3 HOH A 140 940 140 HOH HOH . C 3 HOH A 141 941 141 HOH HOH . C 3 HOH A 142 942 142 HOH HOH . C 3 HOH A 143 943 143 HOH HOH . C 3 HOH A 144 944 144 HOH HOH . C 3 HOH A 145 945 145 HOH HOH . C 3 HOH A 146 946 146 HOH HOH . C 3 HOH A 147 947 147 HOH HOH . C 3 HOH A 148 948 148 HOH HOH . C 3 HOH A 149 949 149 HOH HOH . C 3 HOH A 150 950 150 HOH HOH . C 3 HOH A 151 951 151 HOH HOH . C 3 HOH A 152 952 152 HOH HOH . C 3 HOH A 153 953 153 HOH HOH . C 3 HOH A 154 954 154 HOH HOH . C 3 HOH A 155 955 155 HOH HOH . C 3 HOH A 156 956 156 HOH HOH . C 3 HOH A 157 957 157 HOH HOH . C 3 HOH A 158 958 158 HOH HOH . C 3 HOH A 159 959 159 HOH HOH . C 3 HOH A 160 960 160 HOH HOH . C 3 HOH A 161 961 161 HOH HOH . C 3 HOH A 162 962 162 HOH HOH . C 3 HOH A 163 963 163 HOH HOH . C 3 HOH A 164 964 164 HOH HOH . C 3 HOH A 165 965 165 HOH HOH . C 3 HOH A 166 966 166 HOH HOH . C 3 HOH A 167 967 167 HOH HOH . C 3 HOH A 168 968 168 HOH HOH . C 3 HOH A 169 969 169 HOH HOH . C 3 HOH A 170 970 170 HOH HOH . C 3 HOH A 171 971 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . B 2 0.995 8.812 25.864 1 38.18 ? C4 B49 701 A 1 HETATM 2 C C5 B49 . . . B 2 8.739 13.822 28.99 1 32.94 ? C5 B49 701 A 1 HETATM 3 C C6 B49 . . . B 2 7.382 14.147 29.092 1 32.25 ? C6 B49 701 A 1 HETATM 4 C C7 B49 . . . B 2 8.264 11.71 27.884 1 32.88 ? C7 B49 701 A 1 HETATM 5 C C13 B49 . . . B 2 4.733 7.842 25.769 1 38.14 ? C13 B49 701 A 1 HETATM 6 C C15 B49 . . . B 2 9.175 12.632 28.405 1 33.17 ? C15 B49 701 A 1 HETATM 7 C C17 B49 . . . B 2 6.909 12.009 27.969 1 32.71 ? C17 B49 701 A 1 HETATM 8 C C20 B49 . . . B 2 5.692 11.302 27.536 1 33.52 ? C20 B49 701 A 1 HETATM 9 C C21 B49 . . . B 2 4.613 12.208 27.955 1 32.73 ? C21 B49 701 A 1 HETATM 10 C C22 B49 . . . B 2 2.749 6.294 24.891 1 43.71 ? C22 B49 701 A 1 HETATM 11 C C3 B49 . . . B 2 5.999 7.051 25.535 1 38.74 ? C3 B49 701 A 1 HETATM 12 C C12 B49 . . . B 2 5.766 9.989 26.848 1 34.67 ? C12 B49 701 A 1 HETATM 13 C C14 B49 . . . B 2 2.496 8.7 25.949 1 38.01 ? C14 B49 701 A 1 HETATM 14 C C16 B49 . . . B 2 6.417 13.276 28.591 1 32.41 ? C16 B49 701 A 1 HETATM 15 C C18 B49 . . . B 2 4.607 9.187 26.377 1 36.77 ? C18 B49 701 A 1 HETATM 16 C C19 B49 . . . B 2 3.309 7.537 25.497 1 40.17 ? C19 B49 701 A 1 HETATM 17 N N23 B49 . . . B 2 3.334 9.638 26.448 1 37.14 ? N23 B49 701 A 1 HETATM 18 N N24 B49 . . . B 2 5.057 13.328 28.549 1 32.41 ? N24 B49 701 A 1 HETATM 19 N N25 B49 . . . B 2 3.403 5.687 23.902 1 47.28 ? N25 B49 701 A 1 HETATM 20 O O27 B49 . . . B 2 3.378 11.966 27.766 1 31.29 ? O27 B49 701 A 1 HETATM 21 O O28 B49 . . . B 2 1.703 5.853 25.335 1 44.02 ? O28 B49 701 A 1 HETATM 22 F F29 B49 . . . B 2 10.491 12.387 28.338 1 35.13 ? F29 B49 701 A 1 HETATM 23 C C37 B49 . . . B 2 2.953 4.435 23.326 1 50.13 ? C37 B49 701 A 1 HETATM 24 C C38 B49 . . . B 2 1.685 4.608 22.487 1 52.43 ? C38 B49 701 A 1 HETATM 25 N N4 B49 . . . B 2 1.29 3.369 21.772 1 55.35 ? N4 B49 701 A 1 HETATM 26 C C39 B49 . . . B 2 2.226 3.045 20.656 1 56.24 ? C39 B49 701 A 1 HETATM 27 C C40 B49 . . . B 2 0.997 2.268 22.725 1 56.18 ? C40 B49 701 A 1 HETATM 28 C C41 B49 . . . B 2 0.073 1.237 22.103 1 55.71 ? C41 B49 701 A 1 HETATM 29 C C42 B49 . . . B 2 3.228 1.934 20.926 1 56.21 ? C42 B49 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #