data_4KSH # _model_server_result.job_id ZpEpTzrghSj6Y4NApnzoVg _model_server_result.datetime_utc '2025-01-12 05:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ksh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4KSH # _exptl.entry_id 4KSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.953 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)-1,5-naphthyridin-1(4H)-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KSH _cell.length_a 54.83 _cell.length_b 58.34 _cell.length_c 65.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 Cl N7 O S' _chem_comp.formula_weight 443.953 _chem_comp.id HTT _chem_comp.mon_nstd_flag . _chem_comp.name 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)-1,5-naphthyridin-1(4H)-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 HTT sing 152 n n C27 C28 HTT doub 153 n n C26 C23 HTT sing 154 n n C28 N29 HTT sing 155 n n C23 N24 HTT doub 156 n y C23 C22 HTT sing 157 n y N24 C25 HTT sing 158 n y N29 C22 HTT sing 159 n n N29 O30 HTT sing 160 n n C22 C21 HTT doub 161 n y C25 C20 HTT doub 162 n y C21 C20 HTT sing 163 n y C20 S19 HTT sing 164 n n N18 C15 HTT sing 165 n n S19 C11 HTT sing 166 n n C16 C15 HTT sing 167 n n C16 C17 HTT sing 168 n n C15 C14 HTT sing 169 n n C17 N13 HTT sing 170 n n C11 N10 HTT doub 171 n y C11 N12 HTT sing 172 n y N10 C9 HTT sing 173 n y N13 C9 HTT sing 174 n n N13 C14 HTT sing 175 n n N12 C2 HTT doub 176 n y C9 C3 HTT doub 177 n y C2 C3 HTT sing 178 n y C2 N1 HTT sing 179 n y C3 C4 HTT sing 180 n y N1 C5 HTT sing 181 n y C4 C5 HTT doub 182 n y C4 CL8 HTT sing 183 n n C5 C6 HTT sing 184 n n C6 C7 HTT sing 185 n n C6 H1 HTT sing 186 n n C6 H2 HTT sing 187 n n C7 H3 HTT sing 188 n n C7 H4 HTT sing 189 n n C7 H5 HTT sing 190 n n N1 H6 HTT sing 191 n n C17 H7 HTT sing 192 n n C17 H8 HTT sing 193 n n C16 H9 HTT sing 194 n n C16 H10 HTT sing 195 n n C15 H11 HTT sing 196 n n N18 H12 HTT sing 197 n n N18 H13 HTT sing 198 n n C14 H15 HTT sing 199 n n C14 H16 HTT sing 200 n n C25 H17 HTT sing 201 n n C26 H18 HTT sing 202 n n C27 H19 HTT sing 203 n n C28 H20 HTT sing 204 n n O30 H21 HTT sing 205 n n C21 H22 HTT sing 206 n n C26 H14 HTT sing 207 n n # _atom_sites.entry_id 4KSH _atom_sites.fract_transf_matrix[1][1] 0.018238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HTT A 1 301 1 HTT HTT . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 55 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 59 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 65 HOH HOH . D 4 HOH A 66 466 66 HOH HOH . D 4 HOH A 67 467 67 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . D 4 HOH A 77 477 77 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 80 HOH HOH . D 4 HOH A 81 481 81 HOH HOH . D 4 HOH A 82 482 82 HOH HOH . D 4 HOH A 83 483 83 HOH HOH . D 4 HOH A 84 484 84 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 86 HOH HOH . D 4 HOH A 87 487 87 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 91 HOH HOH . D 4 HOH A 92 492 92 HOH HOH . D 4 HOH A 93 493 93 HOH HOH . D 4 HOH A 94 494 94 HOH HOH . D 4 HOH A 95 495 95 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 97 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 99 HOH HOH . D 4 HOH A 100 500 100 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 102 HOH HOH . D 4 HOH A 103 503 103 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 105 HOH HOH . D 4 HOH A 106 506 106 HOH HOH . D 4 HOH A 107 507 107 HOH HOH . D 4 HOH A 108 508 108 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 110 HOH HOH . D 4 HOH A 111 511 111 HOH HOH . D 4 HOH A 112 512 112 HOH HOH . D 4 HOH A 113 513 113 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 115 HOH HOH . D 4 HOH A 116 516 116 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 119 HOH HOH . D 4 HOH A 120 520 120 HOH HOH . D 4 HOH A 121 521 121 HOH HOH . D 4 HOH A 122 522 122 HOH HOH . D 4 HOH A 123 523 123 HOH HOH . D 4 HOH A 124 524 124 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 126 HOH HOH . D 4 HOH A 127 527 127 HOH HOH . D 4 HOH A 128 528 128 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 131 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 134 HOH HOH . D 4 HOH A 135 535 135 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 137 HOH HOH . D 4 HOH A 138 538 138 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 140 HOH HOH . D 4 HOH A 141 541 141 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 144 HOH HOH . D 4 HOH A 145 545 145 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 147 HOH HOH . D 4 HOH A 148 548 148 HOH HOH . D 4 HOH A 149 549 149 HOH HOH . D 4 HOH A 150 550 150 HOH HOH . D 4 HOH A 151 551 151 HOH HOH . D 4 HOH A 152 552 152 HOH HOH . D 4 HOH A 153 553 153 HOH HOH . D 4 HOH A 154 554 154 HOH HOH . D 4 HOH A 155 555 155 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 157 HOH HOH . D 4 HOH A 158 558 158 HOH HOH . D 4 HOH A 159 559 159 HOH HOH . D 4 HOH A 160 560 160 HOH HOH . D 4 HOH A 161 561 161 HOH HOH . D 4 HOH A 162 562 162 HOH HOH . D 4 HOH A 163 563 163 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 165 HOH HOH . D 4 HOH A 166 566 167 HOH HOH . D 4 HOH A 167 567 168 HOH HOH . D 4 HOH A 168 568 169 HOH HOH . D 4 HOH A 169 569 170 HOH HOH . D 4 HOH A 170 570 171 HOH HOH . D 4 HOH A 171 571 172 HOH HOH . D 4 HOH A 172 572 173 HOH HOH . D 4 HOH A 173 573 174 HOH HOH . D 4 HOH A 174 574 175 HOH HOH . D 4 HOH A 175 575 176 HOH HOH . D 4 HOH A 176 576 177 HOH HOH . D 4 HOH A 177 577 178 HOH HOH . D 4 HOH A 178 578 179 HOH HOH . D 4 HOH A 179 579 180 HOH HOH . D 4 HOH A 180 580 181 HOH HOH . D 4 HOH A 181 581 182 HOH HOH . D 4 HOH A 182 582 183 HOH HOH . D 4 HOH A 183 583 184 HOH HOH . D 4 HOH A 184 584 185 HOH HOH . D 4 HOH A 185 585 186 HOH HOH . D 4 HOH A 186 586 187 HOH HOH . D 4 HOH A 187 587 188 HOH HOH . D 4 HOH A 188 588 189 HOH HOH . D 4 HOH A 189 589 190 HOH HOH . D 4 HOH A 190 590 191 HOH HOH . D 4 HOH A 191 591 192 HOH HOH . D 4 HOH A 192 592 193 HOH HOH . D 4 HOH A 193 593 194 HOH HOH . D 4 HOH A 194 594 195 HOH HOH . D 4 HOH A 195 595 196 HOH HOH . D 4 HOH A 196 596 197 HOH HOH . D 4 HOH A 197 597 198 HOH HOH . D 4 HOH A 198 598 199 HOH HOH . D 4 HOH A 199 599 200 HOH HOH . D 4 HOH A 200 600 201 HOH HOH . D 4 HOH A 201 601 202 HOH HOH . D 4 HOH A 202 602 203 HOH HOH . D 4 HOH A 203 603 204 HOH HOH . D 4 HOH A 204 604 205 HOH HOH . D 4 HOH A 205 605 206 HOH HOH . D 4 HOH A 206 606 207 HOH HOH . D 4 HOH A 207 607 208 HOH HOH . D 4 HOH A 208 608 209 HOH HOH . D 4 HOH A 209 609 210 HOH HOH . D 4 HOH A 210 610 211 HOH HOH . D 4 HOH A 211 611 212 HOH HOH . D 4 HOH A 212 612 213 HOH HOH . D 4 HOH A 213 613 214 HOH HOH . D 4 HOH A 214 614 215 HOH HOH . D 4 HOH A 215 615 216 HOH HOH . D 4 HOH A 216 616 217 HOH HOH . D 4 HOH A 217 617 218 HOH HOH . D 4 HOH A 218 618 220 HOH HOH . D 4 HOH A 219 619 221 HOH HOH . D 4 HOH A 220 620 222 HOH HOH . D 4 HOH A 221 621 223 HOH HOH . D 4 HOH A 222 622 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL8 HTT . . . B 2 -10.239 -2.066 -11.637 1 20.27 ? CL8 HTT 301 A 1 HETATM 2 C C4 HTT . . . B 2 -11.429 -3.229 -12.38 1 19.47 ? C4 HTT 301 A 1 HETATM 3 C C5 HTT . . . B 2 -12.828 -3.302 -11.946 1 19.66 ? C5 HTT 301 A 1 HETATM 4 C C6 HTT . . . B 2 -13.516 -2.426 -10.936 1 19.26 ? C6 HTT 301 A 1 HETATM 5 C C7 HTT . . . B 2 -14.464 -3.269 -10.105 1 18.94 ? C7 HTT 301 A 1 HETATM 6 N N1 HTT . . . B 2 -13.364 -4.329 -12.647 1 19.08 ? N1 HTT 301 A 1 HETATM 7 C C3 HTT . . . B 2 -11.124 -4.261 -13.375 1 20 ? C3 HTT 301 A 1 HETATM 8 C C9 HTT . . . B 2 -9.993 -4.801 -14.203 1 20.2 ? C9 HTT 301 A 1 HETATM 9 N N13 HTT . . . B 2 -8.715 -4.253 -14.344 1 21.42 ? N13 HTT 301 A 1 HETATM 10 C C17 HTT . . . B 2 -7.678 -4.916 -15.14 1 22.83 ? C17 HTT 301 A 1 HETATM 11 C C16 HTT . . . B 2 -6.871 -3.724 -15.659 1 24.27 ? C16 HTT 301 A 1 HETATM 12 C C15 HTT . . . B 2 -7.545 -2.434 -15.196 1 23.34 ? C15 HTT 301 A 1 HETATM 13 N N18 HTT . . . B 2 -8.357 -1.899 -16.288 1 23.76 ? N18 HTT 301 A 1 HETATM 14 C C14 HTT . . . B 2 -8.417 -2.862 -14.01 1 22.51 ? C14 HTT 301 A 1 HETATM 15 N N10 HTT . . . B 2 -10.292 -5.85 -14.996 1 20.58 ? N10 HTT 301 A 1 HETATM 16 C C11 HTT . . . B 2 -11.53 -6.4 -15.024 1 20.52 ? C11 HTT 301 A 1 HETATM 17 N N12 HTT . . . B 2 -12.568 -5.947 -14.303 1 20.04 ? N12 HTT 301 A 1 HETATM 18 C C2 HTT . . . B 2 -12.452 -4.915 -13.455 1 19.77 ? C2 HTT 301 A 1 HETATM 19 S S19 HTT . . . B 2 -11.845 -7.778 -15.943 1 21.06 ? S19 HTT 301 A 1 HETATM 20 C C20 HTT . . . B 2 -10.572 -8.147 -17.009 1 22.84 ? C20 HTT 301 A 1 HETATM 21 C C25 HTT . . . B 2 -9.846 -7.146 -17.663 1 23.33 ? C25 HTT 301 A 1 HETATM 22 N N24 HTT . . . B 2 -8.845 -7.419 -18.518 1 24.71 ? N24 HTT 301 A 1 HETATM 23 C C23 HTT . . . B 2 -8.508 -8.709 -18.768 1 25.55 ? C23 HTT 301 A 1 HETATM 24 C C26 HTT . . . B 2 -7.481 -9.041 -19.648 1 26.56 ? C26 HTT 301 A 1 HETATM 25 C C27 HTT . . . B 2 -7.182 -10.388 -19.869 1 26.44 ? C27 HTT 301 A 1 HETATM 26 C C28 HTT . . . B 2 -7.895 -11.412 -19.239 1 27.47 ? C28 HTT 301 A 1 HETATM 27 N N29 HTT . . . B 2 -8.896 -11.151 -18.377 1 26.57 ? N29 HTT 301 A 1 HETATM 28 O O30 HTT . . . B 2 -9.613 -12.222 -17.747 1 27.3 ? O30 HTT 301 A 1 HETATM 29 C C22 HTT . . . B 2 -9.252 -9.809 -18.102 1 24.99 ? C22 HTT 301 A 1 HETATM 30 C C21 HTT . . . B 2 -10.281 -9.49 -17.224 1 23.5 ? C21 HTT 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #