data_4KT8
#
_model_server_result.job_id            oHP0v9jBWLy1YnhWueQNDQ 
_model_server_result.datetime_utc      '2024-11-05 03:36:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kt8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4KT8 
#
_exptl.entry_id    4KT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.443 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-3-methyl-5-[(1R,2S,8aS)-1,2,5,5-tetramethyl-1,2,3,5,6,7,8,8a-octahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KT8 
_cell.length_a            106.287 
_cell.length_b            106.287 
_cell.length_c            66.753 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -33.3765 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H36 O7 P2' 
_chem_comp.formula_weight    450.443 
_chem_comp.id                9AX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-3-methyl-5-[(1R,2S,8aS)-1,2,5,5-tetramethyl-1,2,3,5,6,7,8,8a-octahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1A PA 9AX doub 1 n n 
O1B PB 9AX doub 2 n n 
O2A PA 9AX sing 3 n n 
PA O3A 9AX sing 4 n n 
PA O 9AX sing 5 n n 
O3A PB 9AX sing 6 n n 
PB O3B 9AX sing 7 n n 
PB O2B 9AX sing 8 n n 
C16 C13 9AX sing 9 n n 
O C15 9AX sing 10 n n 
C15 C14 9AX sing 11 n n 
C13 C14 9AX doub 12 e n 
C13 C12 9AX sing 13 n n 
C2 C1 9AX sing 14 n n 
C2 C3 9AX sing 15 n n 
C1 C10 9AX sing 16 n n 
C3 C4 9AX sing 17 n n 
C11 C12 9AX sing 18 n n 
C11 C9 9AX sing 19 n n 
C10 C9 9AX sing 20 n n 
C10 C5 9AX sing 21 n n 
C9 C20 9AX sing 22 n n 
C9 C8 9AX sing 23 n n 
C4 C5 9AX sing 24 n n 
C4 C18 9AX sing 25 n n 
C4 C19 9AX sing 26 n n 
C5 C6 9AX doub 27 n n 
C8 C17 9AX sing 28 n n 
C8 C7 9AX sing 29 n n 
C6 C7 9AX sing 30 n n 
O2A H1 9AX sing 31 n n 
O2B H2 9AX sing 32 n n 
O3B H3 9AX sing 33 n n 
C2 H4 9AX sing 34 n n 
C2 H5 9AX sing 35 n n 
C6 H6 9AX sing 36 n n 
C7 H7 9AX sing 37 n n 
C7 H8 9AX sing 38 n n 
C15 H9 9AX sing 39 n n 
C15 H10 9AX sing 40 n n 
C14 H11 9AX sing 41 n n 
C16 H12 9AX sing 42 n n 
C16 H13 9AX sing 43 n n 
C16 H14 9AX sing 44 n n 
C12 H15 9AX sing 45 n n 
C12 H16 9AX sing 46 n n 
C11 H17 9AX sing 47 n n 
C11 H18 9AX sing 48 n n 
C20 H19 9AX sing 49 n n 
C20 H20 9AX sing 50 n n 
C20 H21 9AX sing 51 n n 
C10 H22 9AX sing 52 n n 
C1 H23 9AX sing 53 n n 
C1 H24 9AX sing 54 n n 
C3 H25 9AX sing 55 n n 
C3 H26 9AX sing 56 n n 
C18 H27 9AX sing 57 n n 
C18 H28 9AX sing 58 n n 
C18 H29 9AX sing 59 n n 
C19 H30 9AX sing 60 n n 
C19 H31 9AX sing 61 n n 
C19 H32 9AX sing 62 n n 
C8 H33 9AX sing 63 n n 
C17 H34 9AX sing 64 n n 
C17 H35 9AX sing 65 n n 
C17 H36 9AX sing 66 n n 
#
_atom_sites.entry_id                     4KT8 
_atom_sites.fract_transf_matrix[1][1]    0.009408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 302 1 PO4 PO4 . 
C 2 PO4 A 1 303 2 PO4 PO4 . 
D 2 PO4 A 1 304 3 PO4 PO4 . 
E 3 9AX A 1 301 300 9AX TPP . 
F 4 HOH A 1 401 1 HOH HOH . 
F 4 HOH A 2 402 2 HOH HOH . 
F 4 HOH A 3 403 3 HOH HOH . 
F 4 HOH A 4 404 4 HOH HOH . 
F 4 HOH A 5 405 5 HOH HOH . 
F 4 HOH A 6 406 6 HOH HOH . 
F 4 HOH A 7 407 7 HOH HOH . 
F 4 HOH A 8 408 8 HOH HOH . 
F 4 HOH A 9 409 9 HOH HOH . 
F 4 HOH A 10 410 10 HOH HOH . 
F 4 HOH A 11 411 11 HOH HOH . 
F 4 HOH A 12 412 12 HOH HOH . 
F 4 HOH A 13 413 13 HOH HOH . 
F 4 HOH A 14 414 14 HOH HOH . 
F 4 HOH A 15 415 15 HOH HOH . 
F 4 HOH A 16 416 16 HOH HOH . 
F 4 HOH A 17 417 17 HOH HOH . 
F 4 HOH A 18 418 18 HOH HOH . 
F 4 HOH A 19 419 19 HOH HOH . 
F 4 HOH A 20 420 20 HOH HOH . 
F 4 HOH A 21 421 21 HOH HOH . 
F 4 HOH A 22 422 22 HOH HOH . 
F 4 HOH A 23 423 23 HOH HOH . 
F 4 HOH A 24 424 24 HOH HOH . 
F 4 HOH A 25 425 25 HOH HOH . 
F 4 HOH A 26 426 26 HOH HOH . 
F 4 HOH A 27 427 27 HOH HOH . 
F 4 HOH A 28 428 28 HOH HOH . 
F 4 HOH A 29 429 29 HOH HOH . 
F 4 HOH A 30 430 30 HOH HOH . 
F 4 HOH A 31 431 31 HOH HOH . 
F 4 HOH A 32 432 32 HOH HOH . 
F 4 HOH A 33 433 33 HOH HOH . 
F 4 HOH A 34 434 34 HOH HOH . 
F 4 HOH A 35 435 35 HOH HOH . 
F 4 HOH A 36 436 36 HOH HOH . 
F 4 HOH A 37 437 37 HOH HOH . 
F 4 HOH A 38 438 38 HOH HOH . 
F 4 HOH A 39 439 39 HOH HOH . 
F 4 HOH A 40 440 40 HOH HOH . 
F 4 HOH A 41 441 41 HOH HOH . 
F 4 HOH A 42 442 42 HOH HOH . 
F 4 HOH A 43 443 43 HOH HOH . 
F 4 HOH A 44 444 44 HOH HOH . 
F 4 HOH A 45 445 45 HOH HOH . 
F 4 HOH A 46 446 46 HOH HOH . 
F 4 HOH A 47 447 47 HOH HOH . 
F 4 HOH A 48 448 48 HOH HOH . 
F 4 HOH A 49 449 49 HOH HOH . 
F 4 HOH A 50 450 50 HOH HOH . 
F 4 HOH A 51 451 51 HOH HOH . 
F 4 HOH A 52 452 52 HOH HOH . 
F 4 HOH A 53 453 54 HOH HOH . 
F 4 HOH A 54 454 55 HOH HOH . 
F 4 HOH A 55 455 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A 9AX . . . E 3 18.348 -13.516 0.054 1 128.85 ? O1A 9AX 301 A 1 
HETATM 2 O O2A 9AX . . . E 3 19.906 -11.524 0.435 1 129.2 ? O2A 9AX 301 A 1 
HETATM 3 O O3A 9AX . . . E 3 17.456 -11.476 1.309 1 130.07 ? O3A 9AX 301 A 1 
HETATM 4 O O1B 9AX . . . E 3 18.292 -9.242 0.296 1 130.64 ? O1B 9AX 301 A 1 
HETATM 5 O O2B 9AX . . . E 3 18.528 -9.665 2.798 1 130.57 ? O2B 9AX 301 A 1 
HETATM 6 O O3B 9AX . . . E 3 16.197 -9.268 1.76 1 130.22 ? O3B 9AX 301 A 1 
HETATM 7 O O 9AX . . . E 3 19.207 -12.99 2.437 1 128.37 ? O 9AX 301 A 1 
HETATM 8 C C2 9AX . . . E 3 15.479 -20.556 4.078 1 117.44 ? C2 9AX 301 A 1 
HETATM 9 C C5 9AX . . . E 3 16.867 -20.529 6.639 1 117.92 ? C5 9AX 301 A 1 
HETATM 10 C C4 9AX . . . E 3 16.047 -21.69 6.333 1 117.57 ? C4 9AX 301 A 1 
HETATM 11 C C6 9AX . . . E 3 17.116 -20.222 8.023 1 117.75 ? C6 9AX 301 A 1 
HETATM 12 C C7 9AX . . . E 3 17.941 -19.173 8.463 1 117.94 ? C7 9AX 301 A 1 
HETATM 13 P PA 9AX . . . E 3 18.712 -12.438 1.012 1 129.79 ? PA 9AX 301 A 1 
HETATM 14 P PB 9AX . . . E 3 17.65 -9.884 1.47 1 130.58 ? PB 9AX 301 A 1 
HETATM 15 C C15 9AX . . . E 3 20.318 -13.879 2.488 1 126.94 ? C15 9AX 301 A 1 
HETATM 16 C C14 9AX . . . E 3 20.161 -14.73 3.749 1 125.01 ? C14 9AX 301 A 1 
HETATM 17 C C13 9AX . . . E 3 20.493 -16.23 3.66 1 123.67 ? C13 9AX 301 A 1 
HETATM 18 C C16 9AX . . . E 3 20.979 -16.892 2.357 1 123.55 ? C16 9AX 301 A 1 
HETATM 19 C C12 9AX . . . E 3 20.333 -17.057 4.941 1 122.24 ? C12 9AX 301 A 1 
HETATM 20 C C11 9AX . . . E 3 19.309 -18.215 4.824 1 120.2 ? C11 9AX 301 A 1 
HETATM 21 C C9 9AX . . . E 3 18.311 -18.489 6.018 1 119.16 ? C9 9AX 301 A 1 
HETATM 22 C C20 9AX . . . E 3 17.446 -17.194 6.193 1 119.29 ? C20 9AX 301 A 1 
HETATM 23 C C10 9AX . . . E 3 17.444 -19.731 5.551 1 118.67 ? C10 9AX 301 A 1 
HETATM 24 C C1 9AX . . . E 3 16.322 -19.347 4.554 1 118.02 ? C1 9AX 301 A 1 
HETATM 25 C C3 9AX . . . E 3 15.852 -21.877 4.802 1 117.43 ? C3 9AX 301 A 1 
HETATM 26 C C18 9AX . . . E 3 16.748 -22.966 6.841 1 117.33 ? C18 9AX 301 A 1 
HETATM 27 C C19 9AX . . . E 3 14.672 -21.585 7.021 1 117.17 ? C19 9AX 301 A 1 
HETATM 28 C C8 9AX . . . E 3 19.009 -18.858 7.405 1 118.77 ? C8 9AX 301 A 1 
HETATM 29 C C17 9AX . . . E 3 19.868 -17.725 8.018 1 118.56 ? C17 9AX 301 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#