data_4KTT
#
_model_server_result.job_id            Vu0TyRf982RnKBP3I8LaVA 
_model_server_result.datetime_utc      '2024-11-26 22:47:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ktt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":401}' 
#
_entry.id    4KTT 
#
_exptl.entry_id    4KTT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KTT 
_cell.length_a            72.442 
_cell.length_b            115.723 
_cell.length_c            298.455 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O ASP 32 B ASP 31 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc2 B OD2 ASP 36 B ASP 35 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc3 B O LEU 262 B LEU 261 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc4 V MG MG . B MG 410 1_555 OA O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4KTT 
_atom_sites.fract_transf_matrix[1][1]    0.013804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 EDO A 1 401 6 EDO EDO . 
H 3 EDO A 1 402 12 EDO EDO . 
I 3 EDO A 1 403 16 EDO EDO . 
J 3 EDO A 1 404 19 EDO EDO . 
K 4 SAM A 1 405 2 SAM SAM . 
L 5 PO4 A 1 406 2 PO4 PO4 . 
M 3 EDO B 1 401 4 EDO EDO . 
N 3 EDO B 1 402 5 EDO EDO . 
O 3 EDO B 1 403 9 EDO EDO . 
P 3 EDO B 1 404 11 EDO EDO . 
Q 3 EDO B 1 405 15 EDO EDO . 
R 3 EDO B 1 406 18 EDO EDO . 
S 3 EDO B 1 407 22 EDO EDO . 
T 3 EDO B 1 408 26 EDO EDO . 
U 3 EDO B 1 409 28 EDO EDO . 
V 6 MG B 1 410 1 MG MG . 
W 3 EDO C 1 401 1 EDO EDO . 
X 3 EDO C 1 402 2 EDO EDO . 
Y 3 EDO C 1 403 7 EDO EDO . 
Z 4 SAM C 1 404 1 SAM SAM . 
AA 5 PO4 C 1 405 1 PO4 PO4 . 
BA 3 EDO D 1 401 3 EDO EDO . 
CA 3 EDO D 1 402 10 EDO EDO . 
DA 3 EDO D 1 403 13 EDO EDO . 
EA 3 EDO D 1 404 14 EDO EDO . 
FA 3 EDO D 1 405 17 EDO EDO . 
GA 3 EDO D 1 406 20 EDO EDO . 
HA 3 EDO D 1 407 23 EDO EDO . 
IA 3 EDO E 1 401 8 EDO EDO . 
JA 3 EDO E 1 402 21 EDO EDO . 
KA 3 EDO E 1 403 24 EDO EDO . 
LA 3 EDO E 1 404 27 EDO EDO . 
MA 3 EDO F 1 401 29 EDO EDO . 
NA 7 HOH A 1 501 2 HOH HOH . 
NA 7 HOH A 2 502 5 HOH HOH . 
NA 7 HOH A 3 503 6 HOH HOH . 
NA 7 HOH A 4 504 8 HOH HOH . 
NA 7 HOH A 5 505 11 HOH HOH . 
NA 7 HOH A 6 506 28 HOH HOH . 
NA 7 HOH A 7 507 31 HOH HOH . 
NA 7 HOH A 8 508 34 HOH HOH . 
NA 7 HOH A 9 509 36 HOH HOH . 
NA 7 HOH A 10 510 46 HOH HOH . 
NA 7 HOH A 11 511 49 HOH HOH . 
NA 7 HOH A 12 512 50 HOH HOH . 
NA 7 HOH A 13 513 53 HOH HOH . 
NA 7 HOH A 14 514 60 HOH HOH . 
NA 7 HOH A 15 515 61 HOH HOH . 
NA 7 HOH A 16 516 62 HOH HOH . 
NA 7 HOH A 17 517 63 HOH HOH . 
NA 7 HOH A 18 518 64 HOH HOH . 
NA 7 HOH A 19 519 91 HOH HOH . 
NA 7 HOH A 20 520 97 HOH HOH . 
NA 7 HOH A 21 521 99 HOH HOH . 
NA 7 HOH A 22 522 103 HOH HOH . 
NA 7 HOH A 23 523 105 HOH HOH . 
OA 7 HOH B 1 501 7 HOH HOH . 
OA 7 HOH B 2 502 12 HOH HOH . 
OA 7 HOH B 3 503 16 HOH HOH . 
OA 7 HOH B 4 504 21 HOH HOH . 
OA 7 HOH B 5 505 24 HOH HOH . 
OA 7 HOH B 6 506 38 HOH HOH . 
OA 7 HOH B 7 507 40 HOH HOH . 
OA 7 HOH B 8 508 41 HOH HOH . 
OA 7 HOH B 9 509 43 HOH HOH . 
OA 7 HOH B 10 510 44 HOH HOH . 
OA 7 HOH B 11 511 45 HOH HOH . 
OA 7 HOH B 12 512 52 HOH HOH . 
OA 7 HOH B 13 513 54 HOH HOH . 
OA 7 HOH B 14 514 84 HOH HOH . 
OA 7 HOH B 15 515 85 HOH HOH . 
OA 7 HOH B 16 516 94 HOH HOH . 
OA 7 HOH B 17 517 95 HOH HOH . 
OA 7 HOH B 18 518 96 HOH HOH . 
OA 7 HOH B 19 519 100 HOH HOH . 
OA 7 HOH B 20 520 101 HOH HOH . 
OA 7 HOH B 21 521 104 HOH HOH . 
PA 7 HOH C 1 501 1 HOH HOH . 
PA 7 HOH C 2 502 9 HOH HOH . 
PA 7 HOH C 3 503 17 HOH HOH . 
PA 7 HOH C 4 504 18 HOH HOH . 
PA 7 HOH C 5 505 20 HOH HOH . 
PA 7 HOH C 6 506 29 HOH HOH . 
PA 7 HOH C 7 507 30 HOH HOH . 
PA 7 HOH C 8 508 57 HOH HOH . 
PA 7 HOH C 9 509 66 HOH HOH . 
PA 7 HOH C 10 510 75 HOH HOH . 
PA 7 HOH C 11 511 76 HOH HOH . 
PA 7 HOH C 12 512 77 HOH HOH . 
PA 7 HOH C 13 513 78 HOH HOH . 
PA 7 HOH C 14 514 90 HOH HOH . 
PA 7 HOH C 15 515 92 HOH HOH . 
QA 7 HOH D 1 501 3 HOH HOH . 
QA 7 HOH D 2 502 4 HOH HOH . 
QA 7 HOH D 3 503 10 HOH HOH . 
QA 7 HOH D 4 504 15 HOH HOH . 
QA 7 HOH D 5 505 19 HOH HOH . 
QA 7 HOH D 6 506 26 HOH HOH . 
QA 7 HOH D 7 507 27 HOH HOH . 
QA 7 HOH D 8 508 33 HOH HOH . 
QA 7 HOH D 9 509 37 HOH HOH . 
QA 7 HOH D 10 510 39 HOH HOH . 
QA 7 HOH D 11 511 47 HOH HOH . 
QA 7 HOH D 12 512 48 HOH HOH . 
QA 7 HOH D 13 513 51 HOH HOH . 
QA 7 HOH D 14 514 55 HOH HOH . 
QA 7 HOH D 15 515 56 HOH HOH . 
QA 7 HOH D 16 516 58 HOH HOH . 
QA 7 HOH D 17 517 59 HOH HOH . 
QA 7 HOH D 18 518 65 HOH HOH . 
QA 7 HOH D 19 519 67 HOH HOH . 
QA 7 HOH D 20 520 68 HOH HOH . 
QA 7 HOH D 21 521 69 HOH HOH . 
QA 7 HOH D 22 522 70 HOH HOH . 
QA 7 HOH D 23 523 71 HOH HOH . 
QA 7 HOH D 24 524 72 HOH HOH . 
QA 7 HOH D 25 525 73 HOH HOH . 
QA 7 HOH D 26 526 79 HOH HOH . 
QA 7 HOH D 27 527 80 HOH HOH . 
QA 7 HOH D 28 528 81 HOH HOH . 
QA 7 HOH D 29 529 82 HOH HOH . 
QA 7 HOH D 30 530 83 HOH HOH . 
QA 7 HOH D 31 531 86 HOH HOH . 
QA 7 HOH D 32 532 87 HOH HOH . 
QA 7 HOH D 33 533 88 HOH HOH . 
QA 7 HOH D 34 534 93 HOH HOH . 
QA 7 HOH D 35 535 106 HOH HOH . 
RA 7 HOH E 1 501 14 HOH HOH . 
RA 7 HOH E 2 502 22 HOH HOH . 
RA 7 HOH E 3 503 23 HOH HOH . 
RA 7 HOH E 4 504 25 HOH HOH . 
RA 7 HOH E 5 505 32 HOH HOH . 
RA 7 HOH E 6 506 35 HOH HOH . 
RA 7 HOH E 7 507 42 HOH HOH . 
RA 7 HOH E 8 508 98 HOH HOH . 
RA 7 HOH E 9 509 102 HOH HOH . 
RA 7 HOH E 10 510 107 HOH HOH . 
RA 7 HOH E 11 511 108 HOH HOH . 
SA 7 HOH F 1 501 13 HOH HOH . 
SA 7 HOH F 2 502 74 HOH HOH . 
SA 7 HOH F 3 503 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . W 3 26.619 -2.581 -42.063 1 73.05 ? C1 EDO 401 C 1 
HETATM 2 O O1 EDO . . . W 3 25.75 -2.911 -40.973 1 72.35 ? O1 EDO 401 C 1 
HETATM 3 C C2 EDO . . . W 3 27.49 -3.785 -42.412 1 71.83 ? C2 EDO 401 C 1 
HETATM 4 O O2 EDO . . . W 3 27.971 -4.423 -41.219 1 72.28 ? O2 EDO 401 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#