data_4KTT # _model_server_result.job_id 3Krpl0u9SjOf6a1EEfVdkw _model_server_result.datetime_utc '2024-11-07 03:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ktt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 4KTT # _exptl.entry_id 4KTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KTT _cell.length_a 72.442 _cell.length_b 115.723 _cell.length_c 298.455 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ASP 32 B ASP 31 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc2 B OD2 ASP 36 B ASP 35 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc3 B O LEU 262 B LEU 261 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc4 V MG MG . B MG 410 1_555 OA O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4KTT _atom_sites.fract_transf_matrix[1][1] 0.013804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 EDO A 1 401 6 EDO EDO . H 3 EDO A 1 402 12 EDO EDO . I 3 EDO A 1 403 16 EDO EDO . J 3 EDO A 1 404 19 EDO EDO . K 4 SAM A 1 405 2 SAM SAM . L 5 PO4 A 1 406 2 PO4 PO4 . M 3 EDO B 1 401 4 EDO EDO . N 3 EDO B 1 402 5 EDO EDO . O 3 EDO B 1 403 9 EDO EDO . P 3 EDO B 1 404 11 EDO EDO . Q 3 EDO B 1 405 15 EDO EDO . R 3 EDO B 1 406 18 EDO EDO . S 3 EDO B 1 407 22 EDO EDO . T 3 EDO B 1 408 26 EDO EDO . U 3 EDO B 1 409 28 EDO EDO . V 6 MG B 1 410 1 MG MG . W 3 EDO C 1 401 1 EDO EDO . X 3 EDO C 1 402 2 EDO EDO . Y 3 EDO C 1 403 7 EDO EDO . Z 4 SAM C 1 404 1 SAM SAM . AA 5 PO4 C 1 405 1 PO4 PO4 . BA 3 EDO D 1 401 3 EDO EDO . CA 3 EDO D 1 402 10 EDO EDO . DA 3 EDO D 1 403 13 EDO EDO . EA 3 EDO D 1 404 14 EDO EDO . FA 3 EDO D 1 405 17 EDO EDO . GA 3 EDO D 1 406 20 EDO EDO . HA 3 EDO D 1 407 23 EDO EDO . IA 3 EDO E 1 401 8 EDO EDO . JA 3 EDO E 1 402 21 EDO EDO . KA 3 EDO E 1 403 24 EDO EDO . LA 3 EDO E 1 404 27 EDO EDO . MA 3 EDO F 1 401 29 EDO EDO . NA 7 HOH A 1 501 2 HOH HOH . NA 7 HOH A 2 502 5 HOH HOH . NA 7 HOH A 3 503 6 HOH HOH . NA 7 HOH A 4 504 8 HOH HOH . NA 7 HOH A 5 505 11 HOH HOH . NA 7 HOH A 6 506 28 HOH HOH . NA 7 HOH A 7 507 31 HOH HOH . NA 7 HOH A 8 508 34 HOH HOH . NA 7 HOH A 9 509 36 HOH HOH . NA 7 HOH A 10 510 46 HOH HOH . NA 7 HOH A 11 511 49 HOH HOH . NA 7 HOH A 12 512 50 HOH HOH . NA 7 HOH A 13 513 53 HOH HOH . NA 7 HOH A 14 514 60 HOH HOH . NA 7 HOH A 15 515 61 HOH HOH . NA 7 HOH A 16 516 62 HOH HOH . NA 7 HOH A 17 517 63 HOH HOH . NA 7 HOH A 18 518 64 HOH HOH . NA 7 HOH A 19 519 91 HOH HOH . NA 7 HOH A 20 520 97 HOH HOH . NA 7 HOH A 21 521 99 HOH HOH . NA 7 HOH A 22 522 103 HOH HOH . NA 7 HOH A 23 523 105 HOH HOH . OA 7 HOH B 1 501 7 HOH HOH . OA 7 HOH B 2 502 12 HOH HOH . OA 7 HOH B 3 503 16 HOH HOH . OA 7 HOH B 4 504 21 HOH HOH . OA 7 HOH B 5 505 24 HOH HOH . OA 7 HOH B 6 506 38 HOH HOH . OA 7 HOH B 7 507 40 HOH HOH . OA 7 HOH B 8 508 41 HOH HOH . OA 7 HOH B 9 509 43 HOH HOH . OA 7 HOH B 10 510 44 HOH HOH . OA 7 HOH B 11 511 45 HOH HOH . OA 7 HOH B 12 512 52 HOH HOH . OA 7 HOH B 13 513 54 HOH HOH . OA 7 HOH B 14 514 84 HOH HOH . OA 7 HOH B 15 515 85 HOH HOH . OA 7 HOH B 16 516 94 HOH HOH . OA 7 HOH B 17 517 95 HOH HOH . OA 7 HOH B 18 518 96 HOH HOH . OA 7 HOH B 19 519 100 HOH HOH . OA 7 HOH B 20 520 101 HOH HOH . OA 7 HOH B 21 521 104 HOH HOH . PA 7 HOH C 1 501 1 HOH HOH . PA 7 HOH C 2 502 9 HOH HOH . PA 7 HOH C 3 503 17 HOH HOH . PA 7 HOH C 4 504 18 HOH HOH . PA 7 HOH C 5 505 20 HOH HOH . PA 7 HOH C 6 506 29 HOH HOH . PA 7 HOH C 7 507 30 HOH HOH . PA 7 HOH C 8 508 57 HOH HOH . PA 7 HOH C 9 509 66 HOH HOH . PA 7 HOH C 10 510 75 HOH HOH . PA 7 HOH C 11 511 76 HOH HOH . PA 7 HOH C 12 512 77 HOH HOH . PA 7 HOH C 13 513 78 HOH HOH . PA 7 HOH C 14 514 90 HOH HOH . PA 7 HOH C 15 515 92 HOH HOH . QA 7 HOH D 1 501 3 HOH HOH . QA 7 HOH D 2 502 4 HOH HOH . QA 7 HOH D 3 503 10 HOH HOH . QA 7 HOH D 4 504 15 HOH HOH . QA 7 HOH D 5 505 19 HOH HOH . QA 7 HOH D 6 506 26 HOH HOH . QA 7 HOH D 7 507 27 HOH HOH . QA 7 HOH D 8 508 33 HOH HOH . QA 7 HOH D 9 509 37 HOH HOH . QA 7 HOH D 10 510 39 HOH HOH . QA 7 HOH D 11 511 47 HOH HOH . QA 7 HOH D 12 512 48 HOH HOH . QA 7 HOH D 13 513 51 HOH HOH . QA 7 HOH D 14 514 55 HOH HOH . QA 7 HOH D 15 515 56 HOH HOH . QA 7 HOH D 16 516 58 HOH HOH . QA 7 HOH D 17 517 59 HOH HOH . QA 7 HOH D 18 518 65 HOH HOH . QA 7 HOH D 19 519 67 HOH HOH . QA 7 HOH D 20 520 68 HOH HOH . QA 7 HOH D 21 521 69 HOH HOH . QA 7 HOH D 22 522 70 HOH HOH . QA 7 HOH D 23 523 71 HOH HOH . QA 7 HOH D 24 524 72 HOH HOH . QA 7 HOH D 25 525 73 HOH HOH . QA 7 HOH D 26 526 79 HOH HOH . QA 7 HOH D 27 527 80 HOH HOH . QA 7 HOH D 28 528 81 HOH HOH . QA 7 HOH D 29 529 82 HOH HOH . QA 7 HOH D 30 530 83 HOH HOH . QA 7 HOH D 31 531 86 HOH HOH . QA 7 HOH D 32 532 87 HOH HOH . QA 7 HOH D 33 533 88 HOH HOH . QA 7 HOH D 34 534 93 HOH HOH . QA 7 HOH D 35 535 106 HOH HOH . RA 7 HOH E 1 501 14 HOH HOH . RA 7 HOH E 2 502 22 HOH HOH . RA 7 HOH E 3 503 23 HOH HOH . RA 7 HOH E 4 504 25 HOH HOH . RA 7 HOH E 5 505 32 HOH HOH . RA 7 HOH E 6 506 35 HOH HOH . RA 7 HOH E 7 507 42 HOH HOH . RA 7 HOH E 8 508 98 HOH HOH . RA 7 HOH E 9 509 102 HOH HOH . RA 7 HOH E 10 510 107 HOH HOH . RA 7 HOH E 11 511 108 HOH HOH . SA 7 HOH F 1 501 13 HOH HOH . SA 7 HOH F 2 502 74 HOH HOH . SA 7 HOH F 3 503 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 -14.735 -7.047 -112.678 1 71.69 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . H 3 -15.648 -6.847 -111.589 1 71.65 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . H 3 -13.449 -7.738 -112.213 1 69.97 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . H 3 -13.251 -7.555 -110.808 1 68.34 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #