data_4KTT
#
_model_server_result.job_id            TxLczJYsHLlG-N8OjwModA 
_model_server_result.datetime_utc      '2024-11-07 03:33:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ktt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":404}' 
#
_entry.id    4KTT 
#
_exptl.entry_id    4KTT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KTT 
_cell.length_a            72.442 
_cell.length_b            115.723 
_cell.length_c            298.455 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O ASP 32 B ASP 31 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc2 B OD2 ASP 36 B ASP 35 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc3 B O LEU 262 B LEU 261 1_555 V MG MG . B MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc4 V MG MG . B MG 410 1_555 OA O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 290 n n 
N HN1 SAM sing 291 n n 
N HN2 SAM sing 292 n n 
CA C SAM sing 293 n n 
CA CB SAM sing 294 n n 
CA HA SAM sing 295 n n 
C O SAM doub 296 n n 
C OXT SAM sing 297 n n 
CB CG SAM sing 298 n n 
CB HB1 SAM sing 299 n n 
CB HB2 SAM sing 300 n n 
CG SD SAM sing 301 n n 
CG HG1 SAM sing 302 n n 
CG HG2 SAM sing 303 n n 
SD CE SAM sing 304 n n 
SD C5' SAM sing 305 n n 
CE HE1 SAM sing 306 n n 
CE HE2 SAM sing 307 n n 
CE HE3 SAM sing 308 n n 
C5' C4' SAM sing 309 n n 
C5' "H5'1" SAM sing 310 n n 
C5' "H5'2" SAM sing 311 n n 
C4' O4' SAM sing 312 n n 
C4' C3' SAM sing 313 n n 
C4' H4' SAM sing 314 n n 
O4' C1' SAM sing 315 n n 
C3' O3' SAM sing 316 n n 
C3' C2' SAM sing 317 n n 
C3' H3' SAM sing 318 n n 
O3' HO3' SAM sing 319 n n 
C2' O2' SAM sing 320 n n 
C2' C1' SAM sing 321 n n 
C2' H2' SAM sing 322 n n 
O2' HO2' SAM sing 323 n n 
C1' N9 SAM sing 324 n n 
C1' H1' SAM sing 325 n n 
N9 C8 SAM sing 326 n y 
N9 C4 SAM sing 327 n y 
C8 N7 SAM doub 328 n y 
C8 H8 SAM sing 329 n n 
N7 C5 SAM sing 330 n y 
C5 C6 SAM sing 331 n y 
C5 C4 SAM doub 332 n y 
C6 N6 SAM sing 333 n n 
C6 N1 SAM doub 334 n y 
N6 HN61 SAM sing 335 n n 
N6 HN62 SAM sing 336 n n 
N1 C2 SAM sing 337 n y 
C2 N3 SAM doub 338 n y 
C2 H2 SAM sing 339 n n 
N3 C4 SAM sing 340 n y 
#
_atom_sites.entry_id                     4KTT 
_atom_sites.fract_transf_matrix[1][1]    0.013804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 EDO A 1 401 6 EDO EDO . 
H 3 EDO A 1 402 12 EDO EDO . 
I 3 EDO A 1 403 16 EDO EDO . 
J 3 EDO A 1 404 19 EDO EDO . 
K 4 SAM A 1 405 2 SAM SAM . 
L 5 PO4 A 1 406 2 PO4 PO4 . 
M 3 EDO B 1 401 4 EDO EDO . 
N 3 EDO B 1 402 5 EDO EDO . 
O 3 EDO B 1 403 9 EDO EDO . 
P 3 EDO B 1 404 11 EDO EDO . 
Q 3 EDO B 1 405 15 EDO EDO . 
R 3 EDO B 1 406 18 EDO EDO . 
S 3 EDO B 1 407 22 EDO EDO . 
T 3 EDO B 1 408 26 EDO EDO . 
U 3 EDO B 1 409 28 EDO EDO . 
V 6 MG B 1 410 1 MG MG . 
W 3 EDO C 1 401 1 EDO EDO . 
X 3 EDO C 1 402 2 EDO EDO . 
Y 3 EDO C 1 403 7 EDO EDO . 
Z 4 SAM C 1 404 1 SAM SAM . 
AA 5 PO4 C 1 405 1 PO4 PO4 . 
BA 3 EDO D 1 401 3 EDO EDO . 
CA 3 EDO D 1 402 10 EDO EDO . 
DA 3 EDO D 1 403 13 EDO EDO . 
EA 3 EDO D 1 404 14 EDO EDO . 
FA 3 EDO D 1 405 17 EDO EDO . 
GA 3 EDO D 1 406 20 EDO EDO . 
HA 3 EDO D 1 407 23 EDO EDO . 
IA 3 EDO E 1 401 8 EDO EDO . 
JA 3 EDO E 1 402 21 EDO EDO . 
KA 3 EDO E 1 403 24 EDO EDO . 
LA 3 EDO E 1 404 27 EDO EDO . 
MA 3 EDO F 1 401 29 EDO EDO . 
NA 7 HOH A 1 501 2 HOH HOH . 
NA 7 HOH A 2 502 5 HOH HOH . 
NA 7 HOH A 3 503 6 HOH HOH . 
NA 7 HOH A 4 504 8 HOH HOH . 
NA 7 HOH A 5 505 11 HOH HOH . 
NA 7 HOH A 6 506 28 HOH HOH . 
NA 7 HOH A 7 507 31 HOH HOH . 
NA 7 HOH A 8 508 34 HOH HOH . 
NA 7 HOH A 9 509 36 HOH HOH . 
NA 7 HOH A 10 510 46 HOH HOH . 
NA 7 HOH A 11 511 49 HOH HOH . 
NA 7 HOH A 12 512 50 HOH HOH . 
NA 7 HOH A 13 513 53 HOH HOH . 
NA 7 HOH A 14 514 60 HOH HOH . 
NA 7 HOH A 15 515 61 HOH HOH . 
NA 7 HOH A 16 516 62 HOH HOH . 
NA 7 HOH A 17 517 63 HOH HOH . 
NA 7 HOH A 18 518 64 HOH HOH . 
NA 7 HOH A 19 519 91 HOH HOH . 
NA 7 HOH A 20 520 97 HOH HOH . 
NA 7 HOH A 21 521 99 HOH HOH . 
NA 7 HOH A 22 522 103 HOH HOH . 
NA 7 HOH A 23 523 105 HOH HOH . 
OA 7 HOH B 1 501 7 HOH HOH . 
OA 7 HOH B 2 502 12 HOH HOH . 
OA 7 HOH B 3 503 16 HOH HOH . 
OA 7 HOH B 4 504 21 HOH HOH . 
OA 7 HOH B 5 505 24 HOH HOH . 
OA 7 HOH B 6 506 38 HOH HOH . 
OA 7 HOH B 7 507 40 HOH HOH . 
OA 7 HOH B 8 508 41 HOH HOH . 
OA 7 HOH B 9 509 43 HOH HOH . 
OA 7 HOH B 10 510 44 HOH HOH . 
OA 7 HOH B 11 511 45 HOH HOH . 
OA 7 HOH B 12 512 52 HOH HOH . 
OA 7 HOH B 13 513 54 HOH HOH . 
OA 7 HOH B 14 514 84 HOH HOH . 
OA 7 HOH B 15 515 85 HOH HOH . 
OA 7 HOH B 16 516 94 HOH HOH . 
OA 7 HOH B 17 517 95 HOH HOH . 
OA 7 HOH B 18 518 96 HOH HOH . 
OA 7 HOH B 19 519 100 HOH HOH . 
OA 7 HOH B 20 520 101 HOH HOH . 
OA 7 HOH B 21 521 104 HOH HOH . 
PA 7 HOH C 1 501 1 HOH HOH . 
PA 7 HOH C 2 502 9 HOH HOH . 
PA 7 HOH C 3 503 17 HOH HOH . 
PA 7 HOH C 4 504 18 HOH HOH . 
PA 7 HOH C 5 505 20 HOH HOH . 
PA 7 HOH C 6 506 29 HOH HOH . 
PA 7 HOH C 7 507 30 HOH HOH . 
PA 7 HOH C 8 508 57 HOH HOH . 
PA 7 HOH C 9 509 66 HOH HOH . 
PA 7 HOH C 10 510 75 HOH HOH . 
PA 7 HOH C 11 511 76 HOH HOH . 
PA 7 HOH C 12 512 77 HOH HOH . 
PA 7 HOH C 13 513 78 HOH HOH . 
PA 7 HOH C 14 514 90 HOH HOH . 
PA 7 HOH C 15 515 92 HOH HOH . 
QA 7 HOH D 1 501 3 HOH HOH . 
QA 7 HOH D 2 502 4 HOH HOH . 
QA 7 HOH D 3 503 10 HOH HOH . 
QA 7 HOH D 4 504 15 HOH HOH . 
QA 7 HOH D 5 505 19 HOH HOH . 
QA 7 HOH D 6 506 26 HOH HOH . 
QA 7 HOH D 7 507 27 HOH HOH . 
QA 7 HOH D 8 508 33 HOH HOH . 
QA 7 HOH D 9 509 37 HOH HOH . 
QA 7 HOH D 10 510 39 HOH HOH . 
QA 7 HOH D 11 511 47 HOH HOH . 
QA 7 HOH D 12 512 48 HOH HOH . 
QA 7 HOH D 13 513 51 HOH HOH . 
QA 7 HOH D 14 514 55 HOH HOH . 
QA 7 HOH D 15 515 56 HOH HOH . 
QA 7 HOH D 16 516 58 HOH HOH . 
QA 7 HOH D 17 517 59 HOH HOH . 
QA 7 HOH D 18 518 65 HOH HOH . 
QA 7 HOH D 19 519 67 HOH HOH . 
QA 7 HOH D 20 520 68 HOH HOH . 
QA 7 HOH D 21 521 69 HOH HOH . 
QA 7 HOH D 22 522 70 HOH HOH . 
QA 7 HOH D 23 523 71 HOH HOH . 
QA 7 HOH D 24 524 72 HOH HOH . 
QA 7 HOH D 25 525 73 HOH HOH . 
QA 7 HOH D 26 526 79 HOH HOH . 
QA 7 HOH D 27 527 80 HOH HOH . 
QA 7 HOH D 28 528 81 HOH HOH . 
QA 7 HOH D 29 529 82 HOH HOH . 
QA 7 HOH D 30 530 83 HOH HOH . 
QA 7 HOH D 31 531 86 HOH HOH . 
QA 7 HOH D 32 532 87 HOH HOH . 
QA 7 HOH D 33 533 88 HOH HOH . 
QA 7 HOH D 34 534 93 HOH HOH . 
QA 7 HOH D 35 535 106 HOH HOH . 
RA 7 HOH E 1 501 14 HOH HOH . 
RA 7 HOH E 2 502 22 HOH HOH . 
RA 7 HOH E 3 503 23 HOH HOH . 
RA 7 HOH E 4 504 25 HOH HOH . 
RA 7 HOH E 5 505 32 HOH HOH . 
RA 7 HOH E 6 506 35 HOH HOH . 
RA 7 HOH E 7 507 42 HOH HOH . 
RA 7 HOH E 8 508 98 HOH HOH . 
RA 7 HOH E 9 509 102 HOH HOH . 
RA 7 HOH E 10 510 107 HOH HOH . 
RA 7 HOH E 11 511 108 HOH HOH . 
SA 7 HOH F 1 501 13 HOH HOH . 
SA 7 HOH F 2 502 74 HOH HOH . 
SA 7 HOH F 3 503 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . Z 4 20.564 -24.783 -58.082 1 77.34 ? N SAM 404 C 1 
HETATM 2 C CA SAM . . . Z 4 20.193 -23.47 -58.556 1 77.34 ? CA SAM 404 C 1 
HETATM 3 C C SAM . . . Z 4 19.427 -23.746 -59.813 1 78.81 ? C SAM 404 C 1 
HETATM 4 O O SAM . . . Z 4 18.251 -24.167 -59.683 1 84.89 ? O SAM 404 C 1 
HETATM 5 O OXT SAM . . . Z 4 19.975 -23.574 -60.928 1 82.58 ? OXT SAM 404 C 1 
HETATM 6 C CB SAM . . . Z 4 21.407 -22.558 -58.79 1 78.61 ? CB SAM 404 C 1 
HETATM 7 C CG SAM . . . Z 4 22.27 -22.272 -57.546 1 80.21 ? CG SAM 404 C 1 
HETATM 8 S SD SAM . . . Z 4 23.928 -22.276 -57.878 1 83.55 ? SD SAM 404 C 1 
HETATM 9 C CE SAM . . . Z 4 24.596 -23.69 -57.319 1 78.27 ? CE SAM 404 C 1 
HETATM 10 C C5' SAM . . . Z 4 24.626 -20.957 -57.136 1 76.09 ? C5' SAM 404 C 1 
HETATM 11 C C4' SAM . . . Z 4 26.116 -20.726 -57.424 1 72.19 ? C4' SAM 404 C 1 
HETATM 12 O O4' SAM . . . Z 4 26.903 -21.924 -57.394 1 69.63 ? O4' SAM 404 C 1 
HETATM 13 C C3' SAM . . . Z 4 26.396 -20.068 -58.766 1 66.79 ? C3' SAM 404 C 1 
HETATM 14 O O3' SAM . . . Z 4 26.316 -18.642 -58.684 1 62.52 ? O3' SAM 404 C 1 
HETATM 15 C C2' SAM . . . Z 4 27.797 -20.529 -59.079 1 66.49 ? C2' SAM 404 C 1 
HETATM 16 O O2' SAM . . . Z 4 28.765 -19.658 -58.5 1 65.99 ? O2' SAM 404 C 1 
HETATM 17 C C1' SAM . . . Z 4 27.92 -21.884 -58.404 1 67.62 ? C1' SAM 404 C 1 
HETATM 18 N N9 SAM . . . Z 4 27.739 -23.025 -59.349 1 63.54 ? N9 SAM 404 C 1 
HETATM 19 C C8 SAM . . . Z 4 27.026 -23.054 -60.499 1 62.87 ? C8 SAM 404 C 1 
HETATM 20 N N7 SAM . . . Z 4 27.081 -24.278 -61.086 1 58.87 ? N7 SAM 404 C 1 
HETATM 21 C C5 SAM . . . Z 4 27.839 -25.051 -60.295 1 57.83 ? C5 SAM 404 C 1 
HETATM 22 C C6 SAM . . . Z 4 28.312 -26.446 -60.32 1 56.11 ? C6 SAM 404 C 1 
HETATM 23 N N6 SAM . . . Z 4 27.966 -27.281 -61.323 1 58.31 ? N6 SAM 404 C 1 
HETATM 24 N N1 SAM . . . Z 4 29.09 -26.859 -59.302 1 58.13 ? N1 SAM 404 C 1 
HETATM 25 C C2 SAM . . . Z 4 29.436 -26.048 -58.281 1 60.11 ? C2 SAM 404 C 1 
HETATM 26 N N3 SAM . . . Z 4 29.043 -24.764 -58.2 1 60.62 ? N3 SAM 404 C 1 
HETATM 27 C C4 SAM . . . Z 4 28.26 -24.226 -59.157 1 58.75 ? C4 SAM 404 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#