data_4KTU # _model_server_result.job_id bnnxDNBiRyc75VkwwScOPw _model_server_result.datetime_utc '2024-11-13 03:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ktu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4KTU # _exptl.entry_id 4KTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KTU _cell.length_a 71.23 _cell.length_b 71.23 _cell.length_c 72.77 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 B C ACE 1 B ACE 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 sing covale ? covale2 B OG1 THR 4 B THR 4 1_555 B CG ASP 10 B ASP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 sing covale ? covale3 B NZ LYS 6 B LYS 6 1_555 B CD GLU 13 B GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 sing covale ? covale4 B OG SER 9 B SER 9 1_555 B CD GLU 12 B GLU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 sing metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 C CA CA . A CA 301 1_555 D O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 C CA CA . A CA 301 1_555 D O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KTU _atom_sites.fract_transf_matrix[1][1] 0.014039 _atom_sites.fract_transf_matrix[1][2] 0.008105 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 22 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 24 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 30 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 33 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 35 HOH HOH . D 4 HOH A 34 434 36 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 38 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 40 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 44 HOH HOH . D 4 HOH A 43 443 45 HOH HOH . D 4 HOH A 44 444 46 HOH HOH . D 4 HOH A 45 445 47 HOH HOH . D 4 HOH A 46 446 48 HOH HOH . D 4 HOH A 47 447 49 HOH HOH . D 4 HOH A 48 448 50 HOH HOH . D 4 HOH A 49 449 51 HOH HOH . D 4 HOH A 50 450 52 HOH HOH . D 4 HOH A 51 451 53 HOH HOH . D 4 HOH A 52 452 54 HOH HOH . D 4 HOH A 53 453 55 HOH HOH . D 4 HOH A 54 454 56 HOH HOH . D 4 HOH A 55 455 57 HOH HOH . D 4 HOH A 56 456 58 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 60 HOH HOH . D 4 HOH A 59 459 61 HOH HOH . D 4 HOH A 60 460 62 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 64 HOH HOH . D 4 HOH A 63 463 65 HOH HOH . D 4 HOH A 64 464 67 HOH HOH . D 4 HOH A 65 465 68 HOH HOH . D 4 HOH A 66 466 69 HOH HOH . D 4 HOH A 67 467 70 HOH HOH . D 4 HOH A 68 468 71 HOH HOH . D 4 HOH A 69 469 72 HOH HOH . D 4 HOH A 70 470 73 HOH HOH . D 4 HOH A 71 471 74 HOH HOH . D 4 HOH A 72 472 75 HOH HOH . D 4 HOH A 73 473 76 HOH HOH . D 4 HOH A 74 474 77 HOH HOH . D 4 HOH A 75 475 78 HOH HOH . D 4 HOH A 76 476 79 HOH HOH . D 4 HOH A 77 477 80 HOH HOH . D 4 HOH A 78 478 81 HOH HOH . D 4 HOH A 79 479 82 HOH HOH . D 4 HOH A 80 480 84 HOH HOH . D 4 HOH A 81 481 85 HOH HOH . D 4 HOH A 82 482 86 HOH HOH . D 4 HOH A 83 483 87 HOH HOH . D 4 HOH A 84 484 88 HOH HOH . D 4 HOH A 85 485 89 HOH HOH . D 4 HOH A 86 486 91 HOH HOH . D 4 HOH A 87 487 92 HOH HOH . D 4 HOH A 88 488 93 HOH HOH . D 4 HOH A 89 489 94 HOH HOH . D 4 HOH A 90 490 95 HOH HOH . D 4 HOH A 91 491 96 HOH HOH . D 4 HOH A 92 492 97 HOH HOH . D 4 HOH A 93 493 98 HOH HOH . D 4 HOH A 94 494 99 HOH HOH . D 4 HOH A 95 495 100 HOH HOH . D 4 HOH A 96 496 101 HOH HOH . D 4 HOH A 97 497 102 HOH HOH . D 4 HOH A 98 498 103 HOH HOH . D 4 HOH A 99 499 104 HOH HOH . D 4 HOH A 100 500 105 HOH HOH . D 4 HOH A 101 501 106 HOH HOH . D 4 HOH A 102 502 107 HOH HOH . D 4 HOH A 103 503 108 HOH HOH . D 4 HOH A 104 504 109 HOH HOH . D 4 HOH A 105 505 110 HOH HOH . D 4 HOH A 106 506 111 HOH HOH . D 4 HOH A 107 507 112 HOH HOH . D 4 HOH A 108 508 114 HOH HOH . D 4 HOH A 109 509 115 HOH HOH . D 4 HOH A 110 510 116 HOH HOH . D 4 HOH A 111 511 117 HOH HOH . D 4 HOH A 112 512 118 HOH HOH . D 4 HOH A 113 513 119 HOH HOH . D 4 HOH A 114 514 120 HOH HOH . D 4 HOH A 115 515 121 HOH HOH . D 4 HOH A 116 516 122 HOH HOH . D 4 HOH A 117 517 123 HOH HOH . D 4 HOH A 118 518 124 HOH HOH . D 4 HOH A 119 519 125 HOH HOH . D 4 HOH A 120 520 126 HOH HOH . D 4 HOH A 121 521 128 HOH HOH . D 4 HOH A 122 522 129 HOH HOH . D 4 HOH A 123 523 130 HOH HOH . D 4 HOH A 124 524 132 HOH HOH . D 4 HOH A 125 525 133 HOH HOH . D 4 HOH A 126 526 134 HOH HOH . D 4 HOH A 127 527 135 HOH HOH . D 4 HOH A 128 528 136 HOH HOH . D 4 HOH A 129 529 137 HOH HOH . D 4 HOH A 130 530 138 HOH HOH . D 4 HOH A 131 531 139 HOH HOH . D 4 HOH A 132 532 140 HOH HOH . D 4 HOH A 133 533 141 HOH HOH . D 4 HOH A 134 534 142 HOH HOH . D 4 HOH A 135 535 143 HOH HOH . D 4 HOH A 136 536 144 HOH HOH . D 4 HOH A 137 537 145 HOH HOH . D 4 HOH A 138 538 146 HOH HOH . D 4 HOH A 139 539 147 HOH HOH . D 4 HOH A 140 540 148 HOH HOH . D 4 HOH A 141 541 149 HOH HOH . D 4 HOH A 142 542 150 HOH HOH . D 4 HOH A 143 543 152 HOH HOH . D 4 HOH A 144 544 153 HOH HOH . D 4 HOH A 145 545 154 HOH HOH . D 4 HOH A 146 546 155 HOH HOH . D 4 HOH A 147 547 157 HOH HOH . D 4 HOH A 148 548 158 HOH HOH . D 4 HOH A 149 549 159 HOH HOH . D 4 HOH A 150 550 160 HOH HOH . D 4 HOH A 151 551 161 HOH HOH . D 4 HOH A 152 552 163 HOH HOH . D 4 HOH A 153 553 164 HOH HOH . D 4 HOH A 154 554 165 HOH HOH . D 4 HOH A 155 555 166 HOH HOH . D 4 HOH A 156 556 167 HOH HOH . D 4 HOH A 157 557 168 HOH HOH . D 4 HOH A 158 558 169 HOH HOH . D 4 HOH A 159 559 170 HOH HOH . D 4 HOH A 160 560 171 HOH HOH . D 4 HOH A 161 561 172 HOH HOH . D 4 HOH A 162 562 173 HOH HOH . D 4 HOH A 163 563 174 HOH HOH . D 4 HOH A 164 564 175 HOH HOH . D 4 HOH A 165 565 176 HOH HOH . D 4 HOH A 166 566 177 HOH HOH . D 4 HOH A 167 567 178 HOH HOH . D 4 HOH A 168 568 179 HOH HOH . D 4 HOH A 169 569 180 HOH HOH . D 4 HOH A 170 570 181 HOH HOH . D 4 HOH A 171 571 182 HOH HOH . D 4 HOH A 172 572 183 HOH HOH . D 4 HOH A 173 573 184 HOH HOH . D 4 HOH A 174 574 185 HOH HOH . D 4 HOH A 175 575 186 HOH HOH . D 4 HOH A 176 576 187 HOH HOH . D 4 HOH A 177 577 188 HOH HOH . D 4 HOH A 178 578 189 HOH HOH . D 4 HOH A 179 579 190 HOH HOH . D 4 HOH A 180 580 191 HOH HOH . D 4 HOH A 181 581 192 HOH HOH . D 4 HOH A 182 582 193 HOH HOH . D 4 HOH A 183 583 194 HOH HOH . D 4 HOH A 184 584 195 HOH HOH . D 4 HOH A 185 585 196 HOH HOH . D 4 HOH A 186 586 197 HOH HOH . D 4 HOH A 187 587 198 HOH HOH . D 4 HOH A 188 588 199 HOH HOH . D 4 HOH A 189 589 200 HOH HOH . D 4 HOH A 190 590 201 HOH HOH . D 4 HOH A 191 591 202 HOH HOH . D 4 HOH A 192 592 203 HOH HOH . D 4 HOH A 193 593 204 HOH HOH . D 4 HOH A 194 594 205 HOH HOH . D 4 HOH A 195 595 206 HOH HOH . D 4 HOH A 196 596 207 HOH HOH . D 4 HOH A 197 597 208 HOH HOH . D 4 HOH A 198 598 209 HOH HOH . D 4 HOH A 199 599 210 HOH HOH . D 4 HOH A 200 600 211 HOH HOH . D 4 HOH A 201 601 212 HOH HOH . D 4 HOH A 202 602 213 HOH HOH . D 4 HOH A 203 603 214 HOH HOH . D 4 HOH A 204 604 215 HOH HOH . D 4 HOH A 205 605 216 HOH HOH . D 4 HOH A 206 606 217 HOH HOH . D 4 HOH A 207 607 218 HOH HOH . D 4 HOH A 208 608 219 HOH HOH . D 4 HOH A 209 609 220 HOH HOH . D 4 HOH A 210 610 221 HOH HOH . D 4 HOH A 211 611 222 HOH HOH . D 4 HOH A 212 612 224 HOH HOH . D 4 HOH A 213 613 225 HOH HOH . D 4 HOH A 214 614 226 HOH HOH . D 4 HOH A 215 615 227 HOH HOH . D 4 HOH A 216 616 228 HOH HOH . D 4 HOH A 217 617 229 HOH HOH . D 4 HOH A 218 618 230 HOH HOH . D 4 HOH A 219 619 231 HOH HOH . D 4 HOH A 220 620 232 HOH HOH . D 4 HOH A 221 621 233 HOH HOH . D 4 HOH A 222 622 234 HOH HOH . D 4 HOH A 223 623 235 HOH HOH . D 4 HOH A 224 624 236 HOH HOH . D 4 HOH A 225 625 237 HOH HOH . D 4 HOH A 226 626 238 HOH HOH . D 4 HOH A 227 627 239 HOH HOH . D 4 HOH A 228 628 240 HOH HOH . D 4 HOH A 229 629 241 HOH HOH . D 4 HOH A 230 630 243 HOH HOH . D 4 HOH A 231 631 244 HOH HOH . D 4 HOH A 232 632 245 HOH HOH . D 4 HOH A 233 633 246 HOH HOH . D 4 HOH A 234 634 247 HOH HOH . D 4 HOH A 235 635 248 HOH HOH . D 4 HOH A 236 636 249 HOH HOH . D 4 HOH A 237 637 250 HOH HOH . D 4 HOH A 238 638 251 HOH HOH . D 4 HOH A 239 639 252 HOH HOH . D 4 HOH A 240 640 253 HOH HOH . D 4 HOH A 241 641 254 HOH HOH . E 4 HOH B 1 101 15 HOH HOH . E 4 HOH B 2 102 21 HOH HOH . E 4 HOH B 3 103 66 HOH HOH . E 4 HOH B 4 104 83 HOH HOH . E 4 HOH B 5 105 90 HOH HOH . E 4 HOH B 6 106 113 HOH HOH . E 4 HOH B 7 107 127 HOH HOH . E 4 HOH B 8 108 131 HOH HOH . E 4 HOH B 9 109 151 HOH HOH . E 4 HOH B 10 110 156 HOH HOH . E 4 HOH B 11 111 162 HOH HOH . E 4 HOH B 12 112 223 HOH HOH . E 4 HOH B 13 113 242 HOH HOH . E 4 HOH B 14 114 255 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.81 _atom_site.Cartn_y -3.645 _atom_site.Cartn_z 56.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #