data_4KTV # _model_server_result.job_id aTefQ8SuurXnuyLwEe0Ziw _model_server_result.datetime_utc '2024-11-07 01:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ktv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 4KTV # _exptl.entry_id 4KTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KTV _cell.length_a 72.09 _cell.length_b 116.57 _cell.length_c 299.48 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 W N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id R _struct_conn.ptnr1_label_atom_id O3 _struct_conn.ptnr1_label_comp_id POP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id POP _struct_conn.ptnr1_auth_seq_id 404 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id V _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 404 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.632 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 117 n n C1 C2 EDO sing 118 n n C1 H11 EDO sing 119 n n C1 H12 EDO sing 120 n n O1 HO1 EDO sing 121 n n C2 O2 EDO sing 122 n n C2 H21 EDO sing 123 n n C2 H22 EDO sing 124 n n O2 HO2 EDO sing 125 n n # _atom_sites.entry_id 4KTV _atom_sites.fract_transf_matrix[1][1] 0.013872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 EDO A 1 401 3 EDO EDO . H 3 EDO A 1 402 11 EDO EDO . I 4 ADN A 1 403 1 ADN ADN . J 5 PO4 A 1 404 1 PO4 PO4 . K 3 EDO B 1 401 4 EDO EDO . L 3 EDO B 1 402 5 EDO EDO . M 3 EDO B 1 403 7 EDO EDO . N 3 EDO B 1 404 9 EDO EDO . O 3 EDO C 1 401 1 EDO EDO . P 3 EDO C 1 402 14 EDO EDO . Q 4 ADN C 1 403 2 ADN ADN . R 6 POP C 1 404 1 POP POP . S 3 EDO D 1 401 2 EDO EDO . T 3 EDO D 1 402 10 EDO EDO . U 3 EDO D 1 403 12 EDO EDO . V 7 MG D 1 404 2 MG MG . W 3 EDO E 1 401 6 EDO EDO . X 8 HOH A 1 501 1 HOH HOH . X 8 HOH A 2 502 2 HOH HOH . X 8 HOH A 3 503 3 HOH HOH . X 8 HOH A 4 504 17 HOH HOH . X 8 HOH A 5 505 18 HOH HOH . X 8 HOH A 6 506 32 HOH HOH . X 8 HOH A 7 507 33 HOH HOH . Y 8 HOH B 1 501 4 HOH HOH . Y 8 HOH B 2 502 5 HOH HOH . Y 8 HOH B 3 503 6 HOH HOH . Y 8 HOH B 4 504 7 HOH HOH . Y 8 HOH B 5 505 19 HOH HOH . Y 8 HOH B 6 506 20 HOH HOH . Y 8 HOH B 7 507 21 HOH HOH . Y 8 HOH B 8 508 23 HOH HOH . Z 8 HOH C 1 501 8 HOH HOH . Z 8 HOH C 2 502 22 HOH HOH . Z 8 HOH C 3 503 30 HOH HOH . Z 8 HOH C 4 504 34 HOH HOH . AA 8 HOH D 1 501 9 HOH HOH . AA 8 HOH D 2 502 10 HOH HOH . AA 8 HOH D 3 503 11 HOH HOH . AA 8 HOH D 4 504 12 HOH HOH . AA 8 HOH D 5 505 13 HOH HOH . AA 8 HOH D 6 506 14 HOH HOH . AA 8 HOH D 7 507 16 HOH HOH . AA 8 HOH D 8 508 24 HOH HOH . AA 8 HOH D 9 509 26 HOH HOH . AA 8 HOH D 10 510 27 HOH HOH . AA 8 HOH D 11 511 29 HOH HOH . AA 8 HOH D 12 512 35 HOH HOH . AA 8 HOH D 13 513 36 HOH HOH . BA 8 HOH E 1 501 15 HOH HOH . BA 8 HOH E 2 502 28 HOH HOH . BA 8 HOH E 3 503 37 HOH HOH . CA 8 HOH F 1 401 25 HOH HOH . CA 8 HOH F 2 402 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 8.625 -12.131 68.763 1 75.47 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . H 3 9.331 -10.907 68.527 1 71.41 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . H 3 7.167 -12.017 68.311 1 76.31 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . H 3 6.29 -12.803 69.143 1 74.84 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #