data_4KTV
#
_model_server_result.job_id            '_v3rZ2tOHSLkShKgsHKzgQ' 
_model_server_result.datetime_utc      '2024-11-24 16:12:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ktv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":403}' 
#
_entry.id    4KTV 
#
_exptl.entry_id    4KTV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KTV 
_cell.length_a            72.09 
_cell.length_b            116.57 
_cell.length_c            299.48 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KTV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 Q N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            R 
_struct_conn.ptnr1_label_atom_id            O3 
_struct_conn.ptnr1_label_comp_id            POP 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             C 
_struct_conn.ptnr1_auth_comp_id             POP 
_struct_conn.ptnr1_auth_seq_id              404 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            V 
_struct_conn.ptnr2_label_atom_id            MG 
_struct_conn.ptnr2_label_comp_id            MG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             D 
_struct_conn.ptnr2_auth_comp_id             MG 
_struct_conn.ptnr2_auth_seq_id              404 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.632 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     4KTV 
_atom_sites.fract_transf_matrix[1][1]    0.013872 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 EDO A 1 401 3 EDO EDO . 
H 3 EDO A 1 402 11 EDO EDO . 
I 4 ADN A 1 403 1 ADN ADN . 
J 5 PO4 A 1 404 1 PO4 PO4 . 
K 3 EDO B 1 401 4 EDO EDO . 
L 3 EDO B 1 402 5 EDO EDO . 
M 3 EDO B 1 403 7 EDO EDO . 
N 3 EDO B 1 404 9 EDO EDO . 
O 3 EDO C 1 401 1 EDO EDO . 
P 3 EDO C 1 402 14 EDO EDO . 
Q 4 ADN C 1 403 2 ADN ADN . 
R 6 POP C 1 404 1 POP POP . 
S 3 EDO D 1 401 2 EDO EDO . 
T 3 EDO D 1 402 10 EDO EDO . 
U 3 EDO D 1 403 12 EDO EDO . 
V 7 MG D 1 404 2 MG MG . 
W 3 EDO E 1 401 6 EDO EDO . 
X 8 HOH A 1 501 1 HOH HOH . 
X 8 HOH A 2 502 2 HOH HOH . 
X 8 HOH A 3 503 3 HOH HOH . 
X 8 HOH A 4 504 17 HOH HOH . 
X 8 HOH A 5 505 18 HOH HOH . 
X 8 HOH A 6 506 32 HOH HOH . 
X 8 HOH A 7 507 33 HOH HOH . 
Y 8 HOH B 1 501 4 HOH HOH . 
Y 8 HOH B 2 502 5 HOH HOH . 
Y 8 HOH B 3 503 6 HOH HOH . 
Y 8 HOH B 4 504 7 HOH HOH . 
Y 8 HOH B 5 505 19 HOH HOH . 
Y 8 HOH B 6 506 20 HOH HOH . 
Y 8 HOH B 7 507 21 HOH HOH . 
Y 8 HOH B 8 508 23 HOH HOH . 
Z 8 HOH C 1 501 8 HOH HOH . 
Z 8 HOH C 2 502 22 HOH HOH . 
Z 8 HOH C 3 503 30 HOH HOH . 
Z 8 HOH C 4 504 34 HOH HOH . 
AA 8 HOH D 1 501 9 HOH HOH . 
AA 8 HOH D 2 502 10 HOH HOH . 
AA 8 HOH D 3 503 11 HOH HOH . 
AA 8 HOH D 4 504 12 HOH HOH . 
AA 8 HOH D 5 505 13 HOH HOH . 
AA 8 HOH D 6 506 14 HOH HOH . 
AA 8 HOH D 7 507 16 HOH HOH . 
AA 8 HOH D 8 508 24 HOH HOH . 
AA 8 HOH D 9 509 26 HOH HOH . 
AA 8 HOH D 10 510 27 HOH HOH . 
AA 8 HOH D 11 511 29 HOH HOH . 
AA 8 HOH D 12 512 35 HOH HOH . 
AA 8 HOH D 13 513 36 HOH HOH . 
BA 8 HOH E 1 501 15 HOH HOH . 
BA 8 HOH E 2 502 28 HOH HOH . 
BA 8 HOH E 3 503 37 HOH HOH . 
CA 8 HOH F 1 401 25 HOH HOH . 
CA 8 HOH F 2 402 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . Q 4 24.269 23.135 57.426 1 51.42 ? O5' ADN 403 C 1 
HETATM 2 C C5' ADN . . . Q 4 24.427 21.902 58.148 1 58.95 ? C5' ADN 403 C 1 
HETATM 3 C C4' ADN . . . Q 4 25.817 21.244 57.961 1 65.57 ? C4' ADN 403 C 1 
HETATM 4 O O4' ADN . . . Q 4 26.867 22.201 57.707 1 69.35 ? O4' ADN 403 C 1 
HETATM 5 C C3' ADN . . . Q 4 26.292 20.432 59.183 1 68.82 ? C3' ADN 403 C 1 
HETATM 6 O O3' ADN . . . Q 4 26.223 19.015 59.008 1 71.61 ? O3' ADN 403 C 1 
HETATM 7 C C2' ADN . . . Q 4 27.739 20.809 59.41 1 67.28 ? C2' ADN 403 C 1 
HETATM 8 O O2' ADN . . . Q 4 28.582 19.811 58.842 1 64.96 ? O2' ADN 403 C 1 
HETATM 9 C C1' ADN . . . Q 4 27.9 22.147 58.706 1 68.14 ? C1' ADN 403 C 1 
HETATM 10 N N9 ADN . . . Q 4 27.718 23.285 59.657 1 69.93 ? N9 ADN 403 C 1 
HETATM 11 C C8 ADN . . . Q 4 27.032 23.28 60.835 1 71.74 ? C8 ADN 403 C 1 
HETATM 12 N N7 ADN . . . Q 4 27.062 24.498 61.439 1 69.89 ? N7 ADN 403 C 1 
HETATM 13 C C5 ADN . . . Q 4 27.769 25.302 60.636 1 67.74 ? C5 ADN 403 C 1 
HETATM 14 C C6 ADN . . . Q 4 28.17 26.713 60.684 1 67.93 ? C6 ADN 403 C 1 
HETATM 15 N N6 ADN . . . Q 4 27.795 27.47 61.737 1 71.41 ? N6 ADN 403 C 1 
HETATM 16 N N1 ADN . . . Q 4 28.906 27.191 59.658 1 67.67 ? N1 ADN 403 C 1 
HETATM 17 C C2 ADN . . . Q 4 29.267 26.413 58.614 1 70.72 ? C2 ADN 403 C 1 
HETATM 18 N N3 ADN . . . Q 4 28.929 25.111 58.505 1 69.47 ? N3 ADN 403 C 1 
HETATM 19 C C4 ADN . . . Q 4 28.196 24.512 59.469 1 67.93 ? C4 ADN 403 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#