data_4KU7 # _model_server_result.job_id UbmYwEEM15A2rfgYfsoBSw _model_server_result.datetime_utc '2024-11-26 03:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ku7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":425}' # _entry.id 4KU7 # _exptl.entry_id 4KU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KU7 _cell.length_a 47.118 _cell.length_b 47.118 _cell.length_c 101.799 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 4KU7 _atom_sites.fract_transf_matrix[1][1] 0.021223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 1 IOD I . C 2 IOD A 1 402 2 IOD I . D 2 IOD A 1 403 3 IOD I . E 2 IOD A 1 404 4 IOD I . F 2 IOD A 1 405 5 IOD I . G 2 IOD A 1 406 6 IOD I . H 2 IOD A 1 407 7 IOD I . I 2 IOD A 1 408 8 IOD I . J 2 IOD A 1 409 9 IOD I . K 2 IOD A 1 410 10 IOD I . L 2 IOD A 1 411 11 IOD I . M 2 IOD A 1 412 12 IOD I . N 2 IOD A 1 413 13 IOD I . O 2 IOD A 1 414 14 IOD I . P 2 IOD A 1 415 15 IOD I . Q 2 IOD A 1 416 16 IOD I . R 2 IOD A 1 417 17 IOD I . S 2 IOD A 1 418 18 IOD I . T 2 IOD A 1 419 19 IOD I . U 2 IOD A 1 420 20 IOD I . V 2 IOD A 1 421 21 IOD I . W 2 IOD A 1 422 22 IOD I . X 2 IOD A 1 423 23 IOD I . Y 2 IOD A 1 424 28 IOD I . Z 3 PCG A 1 425 1 PCG PCG . AA 4 HOH A 1 501 1 HOH HOH . AA 4 HOH A 2 502 2 HOH HOH . AA 4 HOH A 3 503 3 HOH HOH . AA 4 HOH A 4 504 4 HOH HOH . AA 4 HOH A 5 505 5 HOH HOH . AA 4 HOH A 6 506 6 HOH HOH . AA 4 HOH A 7 507 7 HOH HOH . AA 4 HOH A 8 508 8 HOH HOH . AA 4 HOH A 9 509 9 HOH HOH . AA 4 HOH A 10 510 10 HOH HOH . AA 4 HOH A 11 511 11 HOH HOH . AA 4 HOH A 12 512 12 HOH HOH . AA 4 HOH A 13 513 13 HOH HOH . AA 4 HOH A 14 514 14 HOH HOH . AA 4 HOH A 15 515 15 HOH HOH . AA 4 HOH A 16 516 16 HOH HOH . AA 4 HOH A 17 517 17 HOH HOH . AA 4 HOH A 18 518 18 HOH HOH . AA 4 HOH A 19 519 19 HOH HOH . AA 4 HOH A 20 520 20 HOH HOH . AA 4 HOH A 21 521 21 HOH HOH . AA 4 HOH A 22 522 22 HOH HOH . AA 4 HOH A 23 523 23 HOH HOH . AA 4 HOH A 24 524 24 HOH HOH . AA 4 HOH A 25 525 25 HOH HOH . AA 4 HOH A 26 526 26 HOH HOH . AA 4 HOH A 27 527 27 HOH HOH . AA 4 HOH A 28 528 28 HOH HOH . AA 4 HOH A 29 529 29 HOH HOH . AA 4 HOH A 30 530 30 HOH HOH . AA 4 HOH A 31 531 31 HOH HOH . AA 4 HOH A 32 532 32 HOH HOH . AA 4 HOH A 33 533 33 HOH HOH . AA 4 HOH A 34 534 34 HOH HOH . AA 4 HOH A 35 535 35 HOH HOH . AA 4 HOH A 36 536 36 HOH HOH . AA 4 HOH A 37 537 37 HOH HOH . AA 4 HOH A 38 538 38 HOH HOH . AA 4 HOH A 39 539 39 HOH HOH . AA 4 HOH A 40 540 40 HOH HOH . AA 4 HOH A 41 541 41 HOH HOH . AA 4 HOH A 42 542 42 HOH HOH . AA 4 HOH A 43 543 43 HOH HOH . AA 4 HOH A 44 544 44 HOH HOH . AA 4 HOH A 45 545 45 HOH HOH . AA 4 HOH A 46 546 46 HOH HOH . AA 4 HOH A 47 547 47 HOH HOH . AA 4 HOH A 48 548 48 HOH HOH . AA 4 HOH A 49 549 49 HOH HOH . AA 4 HOH A 50 550 50 HOH HOH . AA 4 HOH A 51 551 51 HOH HOH . AA 4 HOH A 52 552 53 HOH HOH . AA 4 HOH A 53 553 54 HOH HOH . AA 4 HOH A 54 554 58 HOH HOH . AA 4 HOH A 55 555 59 HOH HOH . AA 4 HOH A 56 556 60 HOH HOH . AA 4 HOH A 57 557 61 HOH HOH . AA 4 HOH A 58 558 63 HOH HOH . AA 4 HOH A 59 559 64 HOH HOH . AA 4 HOH A 60 560 67 HOH HOH . AA 4 HOH A 61 561 69 HOH HOH . AA 4 HOH A 62 562 70 HOH HOH . AA 4 HOH A 63 563 71 HOH HOH . AA 4 HOH A 64 564 72 HOH HOH . AA 4 HOH A 65 565 73 HOH HOH . AA 4 HOH A 66 566 74 HOH HOH . AA 4 HOH A 67 567 75 HOH HOH . AA 4 HOH A 68 568 76 HOH HOH . AA 4 HOH A 69 569 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . Z 3 33.484 25.299 33.854 1 17.41 ? PA PCG 425 A 1 HETATM 2 O O1A PCG . . . Z 3 33.608 24.001 33.171 1 16.2 ? O1A PCG 425 A 1 HETATM 3 O O2A PCG . . . Z 3 33.566 26.639 32.938 1 17.15 ? O2A PCG 425 A 1 HETATM 4 O O5' PCG . . . Z 3 34.552 25.409 34.95 1 18.2 ? O5' PCG 425 A 1 HETATM 5 C C5' PCG . . . Z 3 34.419 26.683 35.795 1 18.81 ? C5' PCG 425 A 1 HETATM 6 C C4' PCG . . . Z 3 33.163 26.521 36.557 1 19.31 ? C4' PCG 425 A 1 HETATM 7 O O4' PCG . . . Z 3 32.733 27.531 37.493 1 20.96 ? O4' PCG 425 A 1 HETATM 8 C C3' PCG . . . Z 3 31.998 26.482 35.581 1 16.84 ? C3' PCG 425 A 1 HETATM 9 O O3' PCG . . . Z 3 32.053 25.339 34.674 1 16.51 ? O3' PCG 425 A 1 HETATM 10 C C2' PCG . . . Z 3 30.779 26.444 36.502 1 17.95 ? C2' PCG 425 A 1 HETATM 11 O O2' PCG . . . Z 3 30.352 25.15 36.818 1 19.61 ? O2' PCG 425 A 1 HETATM 12 C C1' PCG . . . Z 3 31.318 27.243 37.707 1 21.43 ? C1' PCG 425 A 1 HETATM 13 N N9 PCG . . . Z 3 30.62 28.514 37.916 1 25.78 ? N9 PCG 425 A 1 HETATM 14 C C8 PCG . . . Z 3 30.018 28.942 39.167 1 29.89 ? C8 PCG 425 A 1 HETATM 15 N N7 PCG . . . Z 3 29.501 30.28 38.932 1 28.07 ? N7 PCG 425 A 1 HETATM 16 C C5 PCG . . . Z 3 29.815 30.661 37.547 1 25.45 ? C5 PCG 425 A 1 HETATM 17 C C6 PCG . . . Z 3 29.524 31.901 36.75 1 30.85 ? C6 PCG 425 A 1 HETATM 18 O O6 PCG . . . Z 3 28.809 32.943 37.343 1 31.42 ? O6 PCG 425 A 1 HETATM 19 N N1 PCG . . . Z 3 29.938 32.001 35.434 1 32.11 ? N1 PCG 425 A 1 HETATM 20 C C2 PCG . . . Z 3 30.648 30.924 34.833 1 28.53 ? C2 PCG 425 A 1 HETATM 21 N N2 PCG . . . Z 3 31.098 31.04 33.457 1 32.25 ? N2 PCG 425 A 1 HETATM 22 N N3 PCG . . . Z 3 30.943 29.681 35.621 1 22.33 ? N3 PCG 425 A 1 HETATM 23 C C4 PCG . . . Z 3 30.518 29.591 36.927 1 23.49 ? C4 PCG 425 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #