data_4KUB
#
_model_server_result.job_id            WoQO0_GMsNRw8m6nnVt34w 
_model_server_result.datetime_utc      '2024-11-23 00:53:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kub 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":207}' 
#
_entry.id    4KUB 
#
_exptl.entry_id    4KUB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KUB 
_cell.length_a            57.359 
_cell.length_b            76.796 
_cell.length_c            39.31 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KUB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 57.359 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 169 n n 
C1 C2 EDO sing 170 n n 
C1 H11 EDO sing 171 n n 
C1 H12 EDO sing 172 n n 
O1 HO1 EDO sing 173 n n 
C2 O2 EDO sing 174 n n 
C2 H21 EDO sing 175 n n 
C2 H22 EDO sing 176 n n 
O2 HO2 EDO sing 177 n n 
#
_atom_sites.entry_id                     4KUB 
_atom_sites.fract_transf_matrix[1][1]    0.017434 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 201 1423 COA COA . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 3 SO4 A 1 203 2 SO4 SO4 . 
E 3 SO4 A 1 204 3 SO4 SO4 . 
F 3 SO4 A 1 205 4 SO4 SO4 . 
G 3 SO4 A 1 206 5 SO4 SO4 . 
H 4 EDO A 1 207 1 EDO EDO . 
I 4 EDO A 1 208 1 EDO EDO . 
J 4 EDO A 1 209 1 EDO EDO . 
K 4 EDO A 1 210 1 EDO EDO . 
L 4 EDO A 1 211 1 EDO EDO . 
M 4 EDO A 1 212 1 EDO EDO . 
N 5 HOH A 1 301 1 HOH HOH . 
N 5 HOH A 2 302 2 HOH HOH . 
N 5 HOH A 3 303 3 HOH HOH . 
N 5 HOH A 4 304 4 HOH HOH . 
N 5 HOH A 5 305 6 HOH HOH . 
N 5 HOH A 6 306 8 HOH HOH . 
N 5 HOH A 7 307 9 HOH HOH . 
N 5 HOH A 8 308 10 HOH HOH . 
N 5 HOH A 9 309 11 HOH HOH . 
N 5 HOH A 10 310 12 HOH HOH . 
N 5 HOH A 11 311 13 HOH HOH . 
N 5 HOH A 12 312 14 HOH HOH . 
N 5 HOH A 13 313 15 HOH HOH . 
N 5 HOH A 14 314 16 HOH HOH . 
N 5 HOH A 15 315 17 HOH HOH . 
N 5 HOH A 16 316 19 HOH HOH . 
N 5 HOH A 17 317 20 HOH HOH . 
N 5 HOH A 18 318 21 HOH HOH . 
N 5 HOH A 19 319 22 HOH HOH . 
N 5 HOH A 20 320 23 HOH HOH . 
N 5 HOH A 21 321 24 HOH HOH . 
N 5 HOH A 22 322 25 HOH HOH . 
N 5 HOH A 23 323 26 HOH HOH . 
N 5 HOH A 24 324 28 HOH HOH . 
N 5 HOH A 25 325 29 HOH HOH . 
N 5 HOH A 26 326 30 HOH HOH . 
N 5 HOH A 27 327 31 HOH HOH . 
N 5 HOH A 28 328 32 HOH HOH . 
N 5 HOH A 29 329 33 HOH HOH . 
N 5 HOH A 30 330 34 HOH HOH . 
N 5 HOH A 31 331 35 HOH HOH . 
N 5 HOH A 32 332 36 HOH HOH . 
N 5 HOH A 33 333 37 HOH HOH . 
N 5 HOH A 34 334 38 HOH HOH . 
N 5 HOH A 35 335 39 HOH HOH . 
N 5 HOH A 36 336 40 HOH HOH . 
N 5 HOH A 37 337 41 HOH HOH . 
N 5 HOH A 38 338 42 HOH HOH . 
N 5 HOH A 39 339 43 HOH HOH . 
N 5 HOH A 40 340 44 HOH HOH . 
N 5 HOH A 41 341 45 HOH HOH . 
N 5 HOH A 42 342 46 HOH HOH . 
N 5 HOH A 43 343 47 HOH HOH . 
N 5 HOH A 44 344 48 HOH HOH . 
N 5 HOH A 45 345 49 HOH HOH . 
N 5 HOH A 46 346 50 HOH HOH . 
N 5 HOH A 47 347 51 HOH HOH . 
N 5 HOH A 48 348 52 HOH HOH . 
N 5 HOH A 49 349 54 HOH HOH . 
N 5 HOH A 50 350 55 HOH HOH . 
N 5 HOH A 51 351 56 HOH HOH . 
N 5 HOH A 52 352 57 HOH HOH . 
N 5 HOH A 53 353 58 HOH HOH . 
N 5 HOH A 54 354 59 HOH HOH . 
N 5 HOH A 55 355 60 HOH HOH . 
N 5 HOH A 56 356 61 HOH HOH . 
N 5 HOH A 57 357 62 HOH HOH . 
N 5 HOH A 58 358 63 HOH HOH . 
N 5 HOH A 59 359 64 HOH HOH . 
N 5 HOH A 60 360 65 HOH HOH . 
N 5 HOH A 61 361 67 HOH HOH . 
N 5 HOH A 62 362 68 HOH HOH . 
N 5 HOH A 63 363 69 HOH HOH . 
N 5 HOH A 64 364 70 HOH HOH . 
N 5 HOH A 65 365 71 HOH HOH . 
N 5 HOH A 66 366 72 HOH HOH . 
N 5 HOH A 67 367 73 HOH HOH . 
N 5 HOH A 68 368 74 HOH HOH . 
N 5 HOH A 69 369 75 HOH HOH . 
N 5 HOH A 70 370 76 HOH HOH . 
N 5 HOH A 71 371 77 HOH HOH . 
N 5 HOH A 72 372 78 HOH HOH . 
N 5 HOH A 73 373 79 HOH HOH . 
N 5 HOH A 74 374 81 HOH HOH . 
N 5 HOH A 75 375 82 HOH HOH . 
N 5 HOH A 76 376 83 HOH HOH . 
N 5 HOH A 77 377 85 HOH HOH . 
N 5 HOH A 78 378 86 HOH HOH . 
N 5 HOH A 79 379 87 HOH HOH . 
N 5 HOH A 80 380 88 HOH HOH . 
N 5 HOH A 81 381 90 HOH HOH . 
N 5 HOH A 82 382 92 HOH HOH . 
N 5 HOH A 83 383 93 HOH HOH . 
N 5 HOH A 84 384 94 HOH HOH . 
N 5 HOH A 85 385 95 HOH HOH . 
N 5 HOH A 86 386 96 HOH HOH . 
N 5 HOH A 87 387 97 HOH HOH . 
N 5 HOH A 88 388 98 HOH HOH . 
N 5 HOH A 89 389 99 HOH HOH . 
N 5 HOH A 90 390 100 HOH HOH . 
N 5 HOH A 91 391 101 HOH HOH . 
N 5 HOH A 92 392 102 HOH HOH . 
N 5 HOH A 93 393 103 HOH HOH . 
N 5 HOH A 94 394 104 HOH HOH . 
N 5 HOH A 95 395 105 HOH HOH . 
N 5 HOH A 96 396 106 HOH HOH . 
N 5 HOH A 97 397 108 HOH HOH . 
N 5 HOH A 98 398 109 HOH HOH . 
N 5 HOH A 99 399 110 HOH HOH . 
N 5 HOH A 100 400 111 HOH HOH . 
N 5 HOH A 101 401 112 HOH HOH . 
N 5 HOH A 102 402 115 HOH HOH . 
N 5 HOH A 103 403 117 HOH HOH . 
N 5 HOH A 104 404 121 HOH HOH . 
N 5 HOH A 105 405 122 HOH HOH . 
N 5 HOH A 106 406 124 HOH HOH . 
N 5 HOH A 107 407 125 HOH HOH . 
N 5 HOH A 108 408 126 HOH HOH . 
N 5 HOH A 109 409 127 HOH HOH . 
N 5 HOH A 110 410 128 HOH HOH . 
N 5 HOH A 111 411 129 HOH HOH . 
N 5 HOH A 112 412 130 HOH HOH . 
N 5 HOH A 113 413 131 HOH HOH . 
N 5 HOH A 114 414 133 HOH HOH . 
N 5 HOH A 115 415 135 HOH HOH . 
N 5 HOH A 116 416 136 HOH HOH . 
N 5 HOH A 117 417 137 HOH HOH . 
N 5 HOH A 118 418 138 HOH HOH . 
N 5 HOH A 119 419 139 HOH HOH . 
N 5 HOH A 120 420 140 HOH HOH . 
N 5 HOH A 121 421 141 HOH HOH . 
N 5 HOH A 122 422 143 HOH HOH . 
N 5 HOH A 123 423 146 HOH HOH . 
N 5 HOH A 124 424 147 HOH HOH . 
N 5 HOH A 125 425 148 HOH HOH . 
N 5 HOH A 126 426 150 HOH HOH . 
N 5 HOH A 127 427 151 HOH HOH . 
N 5 HOH A 128 428 152 HOH HOH . 
N 5 HOH A 129 429 155 HOH HOH . 
N 5 HOH A 130 430 157 HOH HOH . 
N 5 HOH A 131 431 159 HOH HOH . 
N 5 HOH A 132 432 160 HOH HOH . 
N 5 HOH A 133 433 161 HOH HOH . 
N 5 HOH A 134 434 162 HOH HOH . 
N 5 HOH A 135 435 163 HOH HOH . 
N 5 HOH A 136 436 164 HOH HOH . 
N 5 HOH A 137 437 165 HOH HOH . 
N 5 HOH A 138 438 166 HOH HOH . 
N 5 HOH A 139 439 168 HOH HOH . 
N 5 HOH A 140 440 169 HOH HOH . 
N 5 HOH A 141 441 171 HOH HOH . 
N 5 HOH A 142 442 172 HOH HOH . 
N 5 HOH A 143 443 174 HOH HOH . 
N 5 HOH A 144 444 177 HOH HOH . 
N 5 HOH A 145 445 178 HOH HOH . 
N 5 HOH A 146 446 179 HOH HOH . 
N 5 HOH A 147 447 180 HOH HOH . 
N 5 HOH A 148 448 181 HOH HOH . 
N 5 HOH A 149 449 184 HOH HOH . 
N 5 HOH A 150 450 185 HOH HOH . 
N 5 HOH A 151 451 187 HOH HOH . 
N 5 HOH A 152 452 188 HOH HOH . 
N 5 HOH A 153 453 189 HOH HOH . 
N 5 HOH A 154 454 196 HOH HOH . 
N 5 HOH A 155 455 197 HOH HOH . 
N 5 HOH A 156 456 199 HOH HOH . 
N 5 HOH A 157 457 204 HOH HOH . 
N 5 HOH A 158 458 206 HOH HOH . 
N 5 HOH A 159 459 211 HOH HOH . 
N 5 HOH A 160 460 220 HOH HOH . 
N 5 HOH A 161 461 243 HOH HOH . 
N 5 HOH A 162 462 244 HOH HOH . 
N 5 HOH A 163 463 246 HOH HOH . 
N 5 HOH A 164 464 247 HOH HOH . 
N 5 HOH A 165 465 248 HOH HOH . 
N 5 HOH A 166 466 249 HOH HOH . 
N 5 HOH A 167 467 250 HOH HOH . 
N 5 HOH A 168 468 251 HOH HOH . 
N 5 HOH A 169 469 252 HOH HOH . 
N 5 HOH A 170 470 253 HOH HOH . 
N 5 HOH A 171 471 254 HOH HOH . 
N 5 HOH A 172 472 255 HOH HOH . 
N 5 HOH A 173 473 257 HOH HOH . 
N 5 HOH A 174 474 258 HOH HOH . 
N 5 HOH A 175 475 259 HOH HOH . 
N 5 HOH A 176 476 260 HOH HOH . 
N 5 HOH A 177 477 261 HOH HOH . 
N 5 HOH A 178 478 262 HOH HOH . 
N 5 HOH A 179 479 264 HOH HOH . 
N 5 HOH A 180 480 265 HOH HOH . 
N 5 HOH A 181 481 266 HOH HOH . 
N 5 HOH A 182 482 267 HOH HOH . 
N 5 HOH A 183 483 268 HOH HOH . 
N 5 HOH A 184 484 269 HOH HOH . 
N 5 HOH A 185 485 270 HOH HOH . 
N 5 HOH A 186 486 272 HOH HOH . 
N 5 HOH A 187 487 273 HOH HOH . 
N 5 HOH A 188 488 275 HOH HOH . 
N 5 HOH A 189 489 278 HOH HOH . 
N 5 HOH A 190 490 279 HOH HOH . 
N 5 HOH A 191 491 280 HOH HOH . 
N 5 HOH A 192 492 281 HOH HOH . 
N 5 HOH A 193 493 282 HOH HOH . 
N 5 HOH A 194 494 283 HOH HOH . 
N 5 HOH A 195 495 284 HOH HOH . 
N 5 HOH A 196 496 287 HOH HOH . 
N 5 HOH A 197 497 291 HOH HOH . 
N 5 HOH A 198 498 292 HOH HOH . 
N 5 HOH A 199 499 293 HOH HOH . 
N 5 HOH A 200 500 294 HOH HOH . 
N 5 HOH A 201 501 295 HOH HOH . 
N 5 HOH A 202 502 296 HOH HOH . 
N 5 HOH A 203 503 297 HOH HOH . 
N 5 HOH A 204 504 298 HOH HOH . 
N 5 HOH A 205 505 299 HOH HOH . 
N 5 HOH A 206 506 300 HOH HOH . 
N 5 HOH A 207 507 301 HOH HOH . 
N 5 HOH A 208 508 302 HOH HOH . 
N 5 HOH A 209 509 303 HOH HOH . 
N 5 HOH A 210 510 304 HOH HOH . 
N 5 HOH A 211 511 305 HOH HOH . 
N 5 HOH A 212 512 306 HOH HOH . 
N 5 HOH A 213 513 307 HOH HOH . 
N 5 HOH A 214 514 308 HOH HOH . 
N 5 HOH A 215 515 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 8.873 -13.221 -31.744 1 35.02 ? C1 EDO 207 A 1 
HETATM 2 O O1 EDO . . . H 4 8.272 -14.519 -31.855 1 43.38 ? O1 EDO 207 A 1 
HETATM 3 C C2 EDO . . . H 4 10.205 -13.271 -32.416 1 28.18 ? C2 EDO 207 A 1 
HETATM 4 O O2 EDO . . . H 4 10.89 -14.472 -32.156 1 24.75 ? O2 EDO 207 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#