data_4KUK
#
_model_server_result.job_id            WWahH7QB01Tmy9odndJJ7w 
_model_server_result.datetime_utc      '2024-11-17 11:27:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kuk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4KUK 
#
_exptl.entry_id    4KUK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.364 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOFLAVIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.03 
_cell.angle_gamma         90 
_cell.entry_id            4KUK 
_cell.length_a            89.978 
_cell.length_b            30.595 
_cell.length_c            49.332 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KUK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 19.299322 0 -45.400247 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 96 A THR 96 1_555 A N NMM 97 A NMM 97 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C NMM 97 A NMM 97 1_555 A N PHE 98 A PHE 98 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C17 H20 N4 O6' 
_chem_comp.formula_weight    376.364 
_chem_comp.id                RBF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOFLAVIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVINE;VITAMIN B2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 RBF sing 312 n n 
N1 C10 RBF doub 313 n n 
C2 O2 RBF doub 314 n n 
C2 N3 RBF sing 315 n n 
N3 C4 RBF sing 316 n n 
N3 HN3 RBF sing 317 n n 
C4 O4 RBF doub 318 n n 
C4 C4A RBF sing 319 n n 
C4A N5 RBF doub 320 n n 
C4A C10 RBF sing 321 n n 
N5 C5A RBF sing 322 n n 
C5A C6 RBF doub 323 n y 
C5A C9A RBF sing 324 n y 
C6 C7 RBF sing 325 n y 
C6 HC6 RBF sing 326 n n 
C7 C7M RBF sing 327 n n 
C7 C8 RBF doub 328 n y 
C7M HC71 RBF sing 329 n n 
C7M HC72 RBF sing 330 n n 
C7M HC73 RBF sing 331 n n 
C8 C8M RBF sing 332 n n 
C8 C9 RBF sing 333 n y 
C8M HC81 RBF sing 334 n n 
C8M HC82 RBF sing 335 n n 
C8M HC83 RBF sing 336 n n 
C9 C9A RBF doub 337 n y 
C9 HC9 RBF sing 338 n n 
C9A N10 RBF sing 339 n n 
N10 C10 RBF sing 340 n n 
N10 C1' RBF sing 341 n n 
C1' C2' RBF sing 342 n n 
C1' HC11 RBF sing 343 n n 
C1' HC12 RBF sing 344 n n 
C2' O2' RBF sing 345 n n 
C2' C3' RBF sing 346 n n 
C2' HC2' RBF sing 347 n n 
O2' HO2' RBF sing 348 n n 
C3' O3' RBF sing 349 n n 
C3' C4' RBF sing 350 n n 
C3' HC3' RBF sing 351 n n 
O3' HO3' RBF sing 352 n n 
C4' O4' RBF sing 353 n n 
C4' C5' RBF sing 354 n n 
C4' HC4' RBF sing 355 n n 
O4' HO4' RBF sing 356 n n 
C5' O5' RBF sing 357 n n 
C5' HC51 RBF sing 358 n n 
C5' HC52 RBF sing 359 n n 
O5' HO5' RBF sing 360 n n 
#
_atom_sites.entry_id                     4KUK 
_atom_sites.fract_transf_matrix[1][1]    0.011114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004724 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RBF A 1 201 500 RBF RBF . 
C 3 ACY A 1 202 1 ACY ACY . 
D 4 HOH A 1 301 1 HOH HOH . 
D 4 HOH A 2 302 2 HOH HOH . 
D 4 HOH A 3 303 3 HOH HOH . 
D 4 HOH A 4 304 4 HOH HOH . 
D 4 HOH A 5 305 5 HOH HOH . 
D 4 HOH A 6 306 6 HOH HOH . 
D 4 HOH A 7 307 7 HOH HOH . 
D 4 HOH A 8 308 8 HOH HOH . 
D 4 HOH A 9 309 9 HOH HOH . 
D 4 HOH A 10 310 10 HOH HOH . 
D 4 HOH A 11 311 11 HOH HOH . 
D 4 HOH A 12 312 12 HOH HOH . 
D 4 HOH A 13 313 13 HOH HOH . 
D 4 HOH A 14 314 14 HOH HOH . 
D 4 HOH A 15 315 15 HOH HOH . 
D 4 HOH A 16 316 16 HOH HOH . 
D 4 HOH A 17 317 17 HOH HOH . 
D 4 HOH A 18 318 18 HOH HOH . 
D 4 HOH A 19 319 19 HOH HOH . 
D 4 HOH A 20 320 20 HOH HOH . 
D 4 HOH A 21 321 21 HOH HOH . 
D 4 HOH A 22 322 22 HOH HOH . 
D 4 HOH A 23 323 23 HOH HOH . 
D 4 HOH A 24 324 24 HOH HOH . 
D 4 HOH A 25 325 25 HOH HOH . 
D 4 HOH A 26 326 26 HOH HOH . 
D 4 HOH A 27 327 27 HOH HOH . 
D 4 HOH A 28 328 28 HOH HOH . 
D 4 HOH A 29 329 29 HOH HOH . 
D 4 HOH A 30 330 30 HOH HOH . 
D 4 HOH A 31 331 31 HOH HOH . 
D 4 HOH A 32 332 32 HOH HOH . 
D 4 HOH A 33 333 33 HOH HOH . 
D 4 HOH A 34 334 34 HOH HOH . 
D 4 HOH A 35 335 35 HOH HOH . 
D 4 HOH A 36 336 36 HOH HOH . 
D 4 HOH A 37 337 37 HOH HOH . 
D 4 HOH A 38 338 38 HOH HOH . 
D 4 HOH A 39 339 39 HOH HOH . 
D 4 HOH A 40 340 40 HOH HOH . 
D 4 HOH A 41 341 41 HOH HOH . 
D 4 HOH A 42 342 42 HOH HOH . 
D 4 HOH A 43 343 43 HOH HOH . 
D 4 HOH A 44 344 44 HOH HOH . 
D 4 HOH A 45 345 45 HOH HOH . 
D 4 HOH A 46 346 46 HOH HOH . 
D 4 HOH A 47 347 47 HOH HOH . 
D 4 HOH A 48 348 48 HOH HOH . 
D 4 HOH A 49 349 49 HOH HOH . 
D 4 HOH A 50 350 50 HOH HOH . 
D 4 HOH A 51 351 51 HOH HOH . 
D 4 HOH A 52 352 52 HOH HOH . 
D 4 HOH A 53 353 53 HOH HOH . 
D 4 HOH A 54 354 54 HOH HOH . 
D 4 HOH A 55 355 55 HOH HOH . 
D 4 HOH A 56 356 56 HOH HOH . 
D 4 HOH A 57 357 57 HOH HOH . 
D 4 HOH A 58 358 58 HOH HOH . 
D 4 HOH A 59 359 59 HOH HOH . 
D 4 HOH A 60 360 60 HOH HOH . 
D 4 HOH A 61 361 61 HOH HOH . 
D 4 HOH A 62 362 62 HOH HOH . 
D 4 HOH A 63 363 63 HOH HOH . 
D 4 HOH A 64 364 64 HOH HOH . 
D 4 HOH A 65 365 65 HOH HOH . 
D 4 HOH A 66 366 66 HOH HOH . 
D 4 HOH A 67 367 67 HOH HOH . 
D 4 HOH A 68 368 68 HOH HOH . 
D 4 HOH A 69 369 69 HOH HOH . 
D 4 HOH A 70 370 70 HOH HOH . 
D 4 HOH A 71 371 71 HOH HOH . 
D 4 HOH A 72 372 72 HOH HOH . 
D 4 HOH A 73 373 73 HOH HOH . 
D 4 HOH A 74 374 74 HOH HOH . 
D 4 HOH A 75 375 75 HOH HOH . 
D 4 HOH A 76 376 76 HOH HOH . 
D 4 HOH A 77 377 77 HOH HOH . 
D 4 HOH A 78 378 78 HOH HOH . 
D 4 HOH A 79 379 79 HOH HOH . 
D 4 HOH A 80 380 80 HOH HOH . 
D 4 HOH A 81 381 81 HOH HOH . 
D 4 HOH A 82 382 82 HOH HOH . 
D 4 HOH A 83 383 83 HOH HOH . 
D 4 HOH A 84 384 84 HOH HOH . 
D 4 HOH A 85 385 85 HOH HOH . 
D 4 HOH A 86 386 86 HOH HOH . 
D 4 HOH A 87 387 87 HOH HOH . 
D 4 HOH A 88 388 88 HOH HOH . 
D 4 HOH A 89 389 89 HOH HOH . 
D 4 HOH A 90 390 90 HOH HOH . 
D 4 HOH A 91 391 91 HOH HOH . 
D 4 HOH A 92 392 92 HOH HOH . 
D 4 HOH A 93 393 93 HOH HOH . 
D 4 HOH A 94 394 94 HOH HOH . 
D 4 HOH A 95 395 95 HOH HOH . 
D 4 HOH A 96 396 396 HOH HOH . 
D 4 HOH A 97 397 97 HOH HOH . 
D 4 HOH A 98 398 98 HOH HOH . 
D 4 HOH A 99 399 99 HOH HOH . 
D 4 HOH A 100 400 100 HOH HOH . 
D 4 HOH A 101 401 101 HOH HOH . 
D 4 HOH A 102 402 102 HOH HOH . 
D 4 HOH A 103 403 103 HOH HOH . 
D 4 HOH A 104 404 104 HOH HOH . 
D 4 HOH A 105 405 105 HOH HOH . 
D 4 HOH A 106 406 106 HOH HOH . 
D 4 HOH A 107 407 107 HOH HOH . 
D 4 HOH A 108 408 108 HOH HOH . 
D 4 HOH A 109 409 109 HOH HOH . 
D 4 HOH A 110 410 110 HOH HOH . 
D 4 HOH A 111 411 111 HOH HOH . 
D 4 HOH A 112 412 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RBF . . . B 2 11.301 -2.567 -2.398 1 8.79 ? N1 RBF 201 A 1 
HETATM 2 C C2 RBF . . . B 2 11.927 -1.904 -1.385 1 10.28 ? C2 RBF 201 A 1 
HETATM 3 O O2 RBF . . . B 2 12.097 -2.534 -0.318 1 10.96 ? O2 RBF 201 A 1 
HETATM 4 N N3 RBF . . . B 2 12.368 -0.63 -1.492 1 10.88 ? N3 RBF 201 A 1 
HETATM 5 C C4 RBF . . . B 2 12.176 0.088 -2.595 1 8.6 ? C4 RBF 201 A 1 
HETATM 6 O O4 RBF . . . B 2 12.534 1.27 -2.706 1 9.11 ? O4 RBF 201 A 1 
HETATM 7 C C4A RBF . . . B 2 11.509 -0.559 -3.724 1 8.52 ? C4A RBF 201 A 1 
HETATM 8 N N5 RBF . . . B 2 11.285 0.103 -4.879 1 8.37 ? N5 RBF 201 A 1 
HETATM 9 C C5A RBF . . . B 2 10.594 -0.498 -5.891 1 8.28 ? C5A RBF 201 A 1 
HETATM 10 C C6 RBF . . . B 2 10.338 0.214 -7.069 1 11.65 ? C6 RBF 201 A 1 
HETATM 11 C C7 RBF . . . B 2 9.646 -0.383 -8.134 1 9.74 ? C7 RBF 201 A 1 
HETATM 12 C C7M RBF . . . B 2 9.36 0.364 -9.403 1 13.43 ? C7M RBF 201 A 1 
HETATM 13 C C8 RBF . . . B 2 9.185 -1.785 -7.97 1 9.54 ? C8 RBF 201 A 1 
HETATM 14 C C8M RBF . . . B 2 8.435 -2.484 -9.1 1 13.81 ? C8M RBF 201 A 1 
HETATM 15 C C9 RBF . . . B 2 9.435 -2.484 -6.801 1 11.85 ? C9 RBF 201 A 1 
HETATM 16 C C9A RBF . . . B 2 10.142 -1.894 -5.753 1 9.53 ? C9A RBF 201 A 1 
HETATM 17 N N10 RBF . . . B 2 10.414 -2.593 -4.584 1 10.06 ? N10 RBF 201 A 1 
HETATM 18 C C10 RBF . . . B 2 11.053 -1.932 -3.546 1 10.36 ? C10 RBF 201 A 1 
HETATM 19 C C1' RBF . . . B 2 9.88 -3.939 -4.325 1 9.8 ? C1' RBF 201 A 1 
HETATM 20 C C2' RBF . . . B 2 10.744 -5.09 -4.741 1 12.5 ? C2' RBF 201 A 1 
HETATM 21 O O2' RBF . . . B 2 11.414 -4.735 -5.966 1 12.66 ? O2' RBF 201 A 1 
HETATM 22 C C3' RBF . . . B 2 9.873 -6.352 -4.894 1 14.24 ? C3' RBF 201 A 1 
HETATM 23 O O3' RBF . . . B 2 8.835 -6.074 -5.816 1 13.89 ? O3' RBF 201 A 1 
HETATM 24 C C4' RBF . . . B 2 9.233 -6.748 -3.557 1 14.22 ? C4' RBF 201 A 1 
HETATM 25 O O4' RBF . . . B 2 10.304 -7.174 -2.714 1 16.54 ? O4' RBF 201 A 1 
HETATM 26 C C5' RBF . . . B 2 8.182 -7.855 -3.697 1 15.42 ? C5' RBF 201 A 1 
HETATM 27 O O5' RBF . . . B 2 8.72 -8.931 -4.493 1 17.65 ? O5' RBF 201 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#