data_4KUM # _model_server_result.job_id VgkH4JZZOGqbwpAGDDzVgA _model_server_result.datetime_utc '2024-11-22 20:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 4KUM # _exptl.entry_id 4KUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.429 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-5,6,7,8-TETRAHYDROFOLATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KUM _cell.length_a 123.864 _cell.length_b 179.371 _cell.length_c 235.054 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O6' _chem_comp.formula_weight 445.429 _chem_comp.id THG _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-5,6,7,8-TETRAHYDROFOLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 THG sing 394 n y N3 C4 THG sing 395 n y N3 HN3 THG sing 396 n n C2 N1 THG doub 397 n y C2 N2 THG sing 398 n n N1 C8A THG sing 399 n y C8A C4A THG doub 400 n y C8A N8 THG sing 401 n n C4A C4 THG sing 402 n y C4A N5 THG sing 403 n n C4 O4 THG doub 404 n n N8 C7 THG sing 405 n n N8 HN8 THG sing 406 n n C7 C6 THG sing 407 n n C7 HC71 THG sing 408 n n C7 HC72 THG sing 409 n n C6 N5 THG sing 410 n n C6 C9 THG sing 411 n n C6 HC6 THG sing 412 n n N5 HN5 THG sing 413 n n C9 N10 THG sing 414 n n C9 HC91 THG sing 415 n n C9 HC92 THG sing 416 n n N10 C4' THG sing 417 n n N10 H10 THG sing 418 n n C4' C3' THG doub 419 n y C4' C5' THG sing 420 n y C3' C2' THG sing 421 n y C3' HC3 THG sing 422 n n C2' C1' THG doub 423 n y C2' HC2 THG sing 424 n n C1' C6' THG sing 425 n y C1' C11 THG sing 426 n n C6' C5' THG doub 427 n y C6' HC61 THG sing 428 n n C5' HC5 THG sing 429 n n C11 N THG sing 430 n n C11 O11 THG doub 431 n n N CA THG sing 432 n n N HN THG sing 433 n n CA C THG sing 434 n n CA CB THG sing 435 n n CA HCA THG sing 436 n n C OX2 THG sing 437 n n C OX1 THG doub 438 n n OX2 HX2 THG sing 439 n n CB CG THG sing 440 n n CB HCB1 THG sing 441 n n CB HCB2 THG sing 442 n n CG CD THG sing 443 n n CG HCG1 THG sing 444 n n CG HCG2 THG sing 445 n n CD OE1 THG doub 446 n n CD OE2 THG sing 447 n n OE2 HE2 THG sing 448 n n N2 HN21 THG sing 449 n n N2 HN22 THG sing 450 n n # _atom_sites.entry_id 4KUM _atom_sites.fract_transf_matrix[1][1] 0.008073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 901 901 FAD FAD . D 4 GOL A 1 902 902 GOL GOL . E 5 THG A 1 903 903 THG THG . F 6 CL A 1 904 904 CL CL . G 7 HOH A 1 1001 1001 HOH HOH . G 7 HOH A 2 1002 1002 HOH HOH . G 7 HOH A 3 1003 1003 HOH HOH . G 7 HOH A 4 1004 1004 HOH HOH . G 7 HOH A 5 1005 1005 HOH HOH . G 7 HOH A 6 1006 1006 HOH HOH . G 7 HOH A 7 1007 1007 HOH HOH . G 7 HOH A 8 1008 1008 HOH HOH . G 7 HOH A 9 1009 1009 HOH HOH . G 7 HOH A 10 1010 1010 HOH HOH . G 7 HOH A 11 1011 1011 HOH HOH . G 7 HOH A 12 1012 1012 HOH HOH . G 7 HOH A 13 1013 1013 HOH HOH . G 7 HOH A 14 1014 1014 HOH HOH . G 7 HOH A 15 1015 1015 HOH HOH . G 7 HOH A 16 1016 1016 HOH HOH . G 7 HOH A 17 1017 1017 HOH HOH . G 7 HOH A 18 1018 1018 HOH HOH . G 7 HOH A 19 1019 1019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 THG . . . E 5 66.499 50.241 33.625 1 136.28 ? N3 THG 903 A 1 HETATM 2 C C2 THG . . . E 5 66.668 50.301 32.282 1 133.52 ? C2 THG 903 A 1 HETATM 3 N N1 THG . . . E 5 66.34 51.391 31.538 1 121.76 ? N1 THG 903 A 1 HETATM 4 C C8A THG . . . E 5 65.82 52.497 32.119 1 124.42 ? C8A THG 903 A 1 HETATM 5 C C4A THG . . . E 5 65.581 52.494 33.585 1 125.91 ? C4A THG 903 A 1 HETATM 6 C C4 THG . . . E 5 65.981 51.263 34.333 1 125.08 ? C4 THG 903 A 1 HETATM 7 N N8 THG . . . E 5 65.454 53.576 31.39 1 114.98 ? N8 THG 903 A 1 HETATM 8 C C7 THG . . . E 5 64.685 54.652 31.995 1 104.09 ? C7 THG 903 A 1 HETATM 9 C C6 THG . . . E 5 65.073 54.89 33.454 1 106.4 ? C6 THG 903 A 1 HETATM 10 N N5 THG . . . E 5 65.112 53.619 34.182 1 119.43 ? N5 THG 903 A 1 HETATM 11 C C9 THG . . . E 5 66.402 55.664 33.504 1 105.27 ? C9 THG 903 A 1 HETATM 12 N N10 THG . . . E 5 66.848 55.943 34.869 1 111.49 ? N10 THG 903 A 1 HETATM 13 C C4' THG . . . E 5 67.537 55.048 35.616 1 110.01 ? C4' THG 903 A 1 HETATM 14 C C3' THG . . . E 5 67.593 55.218 37.002 1 103.96 ? C3' THG 903 A 1 HETATM 15 C C2' THG . . . E 5 68.25 54.272 37.787 1 107.68 ? C2' THG 903 A 1 HETATM 16 C C1' THG . . . E 5 68.838 53.158 37.194 1 111.45 ? C1' THG 903 A 1 HETATM 17 C C6' THG . . . E 5 68.76 52.986 35.814 1 106.67 ? C6' THG 903 A 1 HETATM 18 C C5' THG . . . E 5 68.122 53.923 35.027 1 108.13 ? C5' THG 903 A 1 HETATM 19 C C11 THG . . . E 5 69.499 52.062 37.987 1 125.3 ? C11 THG 903 A 1 HETATM 20 N N THG . . . E 5 68.978 50.851 37.667 1 135.1 ? N THG 903 A 1 HETATM 21 C CA THG . . . E 5 69.317 49.506 38.125 1 136.52 ? CA THG 903 A 1 HETATM 22 C C THG . . . E 5 70.792 49.262 38.397 1 126 ? C THG 903 A 1 HETATM 23 O OX2 THG . . . E 5 71.587 49.055 37.449 1 115.25 ? OX2 THG 903 A 1 HETATM 24 O OX1 THG . . . E 5 71.194 49.254 39.578 1 116.47 ? OX1 THG 903 A 1 HETATM 25 C CB THG . . . E 5 68.83 48.523 37.034 1 141.91 ? CB THG 903 A 1 HETATM 26 C CG THG . . . E 5 67.346 48.128 36.982 1 136.79 ? CG THG 903 A 1 HETATM 27 C CD THG . . . E 5 67.192 46.92 36.055 1 133.16 ? CD THG 903 A 1 HETATM 28 O OE1 THG . . . E 5 66.752 47.063 34.888 1 108.67 ? OE1 THG 903 A 1 HETATM 29 O OE2 THG . . . E 5 67.527 45.787 36.481 1 133.73 ? OE2 THG 903 A 1 HETATM 30 O O11 THG . . . E 5 70.361 52.29 38.821 1 127.89 ? O11 THG 903 A 1 HETATM 31 O O4 THG . . . E 5 65.84 51.156 35.579 1 102.34 ? O4 THG 903 A 1 HETATM 32 N N2 THG . . . E 5 67.19 49.228 31.639 1 142.63 ? N2 THG 903 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #