data_4KVF # _model_server_result.job_id NmLwG1SX4bvN8NMQ1bSlEA _model_server_result.datetime_utc '2024-12-12 08:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4KVF # _exptl.entry_id 4KVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KVF _cell.length_a 71.274 _cell.length_b 78.451 _cell.length_c 49.705 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 132 1_555 A SG CYS 135 A CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A C LYS 154 A LYS 175 1_555 A N MSE 155 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 155 A MSE 176 1_555 A N ALA 156 A ALA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C VAL 184 A VAL 205 1_555 A N MSE 185 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 185 A MSE 206 1_555 A N LYS 186 A LYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLN 263 A GLN 284 1_555 A N MSE 264 A MSE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 264 A MSE 285 1_555 A N ARG 265 A ARG 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4KVF _atom_sites.fract_transf_matrix[1][1] 0.01403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 HOH A 1 501 1 HOH HOH . D 3 HOH A 2 502 2 HOH HOH . D 3 HOH A 3 503 3 HOH HOH . D 3 HOH A 4 504 4 HOH HOH . D 3 HOH A 5 505 5 HOH HOH . D 3 HOH A 6 506 6 HOH HOH . D 3 HOH A 7 507 7 HOH HOH . D 3 HOH A 8 508 8 HOH HOH . D 3 HOH A 9 509 9 HOH HOH . D 3 HOH A 10 510 10 HOH HOH . D 3 HOH A 11 511 11 HOH HOH . D 3 HOH A 12 512 12 HOH HOH . D 3 HOH A 13 513 13 HOH HOH . D 3 HOH A 14 514 14 HOH HOH . D 3 HOH A 15 515 15 HOH HOH . D 3 HOH A 16 516 16 HOH HOH . D 3 HOH A 17 517 17 HOH HOH . D 3 HOH A 18 518 18 HOH HOH . D 3 HOH A 19 519 19 HOH HOH . D 3 HOH A 20 520 20 HOH HOH . D 3 HOH A 21 521 21 HOH HOH . D 3 HOH A 22 522 22 HOH HOH . D 3 HOH A 23 523 23 HOH HOH . D 3 HOH A 24 524 24 HOH HOH . D 3 HOH A 25 525 25 HOH HOH . D 3 HOH A 26 526 26 HOH HOH . D 3 HOH A 27 527 27 HOH HOH . D 3 HOH A 28 528 28 HOH HOH . D 3 HOH A 29 529 29 HOH HOH . D 3 HOH A 30 530 30 HOH HOH . D 3 HOH A 31 531 31 HOH HOH . D 3 HOH A 32 532 32 HOH HOH . D 3 HOH A 33 533 33 HOH HOH . D 3 HOH A 34 534 34 HOH HOH . D 3 HOH A 35 535 35 HOH HOH . D 3 HOH A 36 536 36 HOH HOH . D 3 HOH A 37 537 37 HOH HOH . D 3 HOH A 38 538 38 HOH HOH . D 3 HOH A 39 539 39 HOH HOH . D 3 HOH A 40 540 40 HOH HOH . D 3 HOH A 41 541 41 HOH HOH . D 3 HOH A 42 542 42 HOH HOH . D 3 HOH A 43 543 43 HOH HOH . D 3 HOH A 44 544 44 HOH HOH . D 3 HOH A 45 545 45 HOH HOH . D 3 HOH A 46 546 46 HOH HOH . D 3 HOH A 47 547 47 HOH HOH . D 3 HOH A 48 548 48 HOH HOH . D 3 HOH A 49 549 49 HOH HOH . D 3 HOH A 50 550 50 HOH HOH . D 3 HOH A 51 551 51 HOH HOH . D 3 HOH A 52 552 52 HOH HOH . D 3 HOH A 53 553 53 HOH HOH . D 3 HOH A 54 554 54 HOH HOH . D 3 HOH A 55 555 55 HOH HOH . D 3 HOH A 56 556 56 HOH HOH . D 3 HOH A 57 557 57 HOH HOH . D 3 HOH A 58 558 58 HOH HOH . D 3 HOH A 59 559 59 HOH HOH . D 3 HOH A 60 560 60 HOH HOH . D 3 HOH A 61 561 61 HOH HOH . D 3 HOH A 62 562 62 HOH HOH . D 3 HOH A 63 563 63 HOH HOH . D 3 HOH A 64 564 64 HOH HOH . D 3 HOH A 65 565 65 HOH HOH . D 3 HOH A 66 566 66 HOH HOH . D 3 HOH A 67 567 67 HOH HOH . D 3 HOH A 68 568 68 HOH HOH . D 3 HOH A 69 569 69 HOH HOH . D 3 HOH A 70 570 70 HOH HOH . D 3 HOH A 71 571 71 HOH HOH . D 3 HOH A 72 572 72 HOH HOH . D 3 HOH A 73 573 73 HOH HOH . D 3 HOH A 74 574 74 HOH HOH . D 3 HOH A 75 575 75 HOH HOH . D 3 HOH A 76 576 76 HOH HOH . D 3 HOH A 77 577 77 HOH HOH . D 3 HOH A 78 578 78 HOH HOH . D 3 HOH A 79 579 79 HOH HOH . D 3 HOH A 80 580 80 HOH HOH . D 3 HOH A 81 581 81 HOH HOH . D 3 HOH A 82 582 82 HOH HOH . D 3 HOH A 83 583 83 HOH HOH . D 3 HOH A 84 584 84 HOH HOH . D 3 HOH A 85 585 85 HOH HOH . D 3 HOH A 86 586 86 HOH HOH . D 3 HOH A 87 587 87 HOH HOH . D 3 HOH A 88 588 88 HOH HOH . D 3 HOH A 89 589 89 HOH HOH . D 3 HOH A 90 590 90 HOH HOH . D 3 HOH A 91 591 91 HOH HOH . D 3 HOH A 92 592 92 HOH HOH . D 3 HOH A 93 593 93 HOH HOH . D 3 HOH A 94 594 94 HOH HOH . D 3 HOH A 95 595 95 HOH HOH . D 3 HOH A 96 596 96 HOH HOH . D 3 HOH A 97 597 97 HOH HOH . D 3 HOH A 98 598 98 HOH HOH . D 3 HOH A 99 599 99 HOH HOH . D 3 HOH A 100 600 100 HOH HOH . D 3 HOH A 101 601 101 HOH HOH . D 3 HOH A 102 602 102 HOH HOH . D 3 HOH A 103 603 103 HOH HOH . D 3 HOH A 104 604 104 HOH HOH . D 3 HOH A 105 605 105 HOH HOH . D 3 HOH A 106 606 106 HOH HOH . D 3 HOH A 107 607 107 HOH HOH . D 3 HOH A 108 608 108 HOH HOH . D 3 HOH A 109 609 109 HOH HOH . D 3 HOH A 110 610 110 HOH HOH . D 3 HOH A 111 611 111 HOH HOH . D 3 HOH A 112 612 112 HOH HOH . D 3 HOH A 113 613 113 HOH HOH . D 3 HOH A 114 614 114 HOH HOH . D 3 HOH A 115 615 115 HOH HOH . D 3 HOH A 116 616 116 HOH HOH . D 3 HOH A 117 617 117 HOH HOH . D 3 HOH A 118 618 118 HOH HOH . D 3 HOH A 119 619 119 HOH HOH . D 3 HOH A 120 620 120 HOH HOH . D 3 HOH A 121 621 121 HOH HOH . D 3 HOH A 122 622 122 HOH HOH . D 3 HOH A 123 623 123 HOH HOH . D 3 HOH A 124 624 124 HOH HOH . D 3 HOH A 125 625 125 HOH HOH . D 3 HOH A 126 626 126 HOH HOH . D 3 HOH A 127 627 127 HOH HOH . D 3 HOH A 128 628 128 HOH HOH . D 3 HOH A 129 629 129 HOH HOH . D 3 HOH A 130 630 130 HOH HOH . D 3 HOH A 131 631 131 HOH HOH . D 3 HOH A 132 632 132 HOH HOH . D 3 HOH A 133 633 133 HOH HOH . D 3 HOH A 134 634 134 HOH HOH . D 3 HOH A 135 635 135 HOH HOH . D 3 HOH A 136 636 136 HOH HOH . D 3 HOH A 137 637 137 HOH HOH . D 3 HOH A 138 638 138 HOH HOH . D 3 HOH A 139 639 139 HOH HOH . D 3 HOH A 140 640 140 HOH HOH . D 3 HOH A 141 641 141 HOH HOH . D 3 HOH A 142 642 142 HOH HOH . D 3 HOH A 143 643 143 HOH HOH . D 3 HOH A 144 644 144 HOH HOH . D 3 HOH A 145 645 145 HOH HOH . D 3 HOH A 146 646 146 HOH HOH . D 3 HOH A 147 647 147 HOH HOH . D 3 HOH A 148 648 148 HOH HOH . D 3 HOH A 149 649 149 HOH HOH . D 3 HOH A 150 650 150 HOH HOH . D 3 HOH A 151 651 151 HOH HOH . D 3 HOH A 152 652 152 HOH HOH . D 3 HOH A 153 653 153 HOH HOH . D 3 HOH A 154 654 154 HOH HOH . D 3 HOH A 155 655 155 HOH HOH . D 3 HOH A 156 656 156 HOH HOH . D 3 HOH A 157 657 157 HOH HOH . D 3 HOH A 158 658 158 HOH HOH . D 3 HOH A 159 659 159 HOH HOH . D 3 HOH A 160 660 160 HOH HOH . D 3 HOH A 161 661 161 HOH HOH . D 3 HOH A 162 662 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -12.732 22.259 16.838 1 67.89 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 -13.732 21.815 15.945 1 72.51 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 -11.612 22.986 16.095 1 71.92 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 -11.06 22.164 15.085 1 65.27 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 -12.137 24.288 15.494 1 77.5 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 -11.564 25.391 16.166 1 77.87 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 931 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #