data_4KW6 # _model_server_result.job_id jzEnH77MEFG6ZRzgpQ2cVQ _model_server_result.datetime_utc '2024-10-10 06:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 4KW6 # _exptl.entry_id 4KW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.991 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-bis(bromomethyl)quinoxaline 1,4-dioxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 4KW6 _cell.length_a 141.554 _cell.length_b 141.657 _cell.length_c 68.855 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -20.354834 0 136.197375 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 178 A CYS 170 1_555 F C12 QDO . B QDO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? covale ? covale2 B SG CYS 57 B CYS 49 1_555 F C1 QDO . B QDO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? covale ? covale3 C SG CYS 57 C CYS 49 1_555 G C1 QDO . C QDO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale4 G C12 QDO . C QDO 201 1_555 D SG CYS 178 D CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? # _chem_comp.formula 'C10 H8 Br2 N2 O2' _chem_comp.formula_weight 347.991 _chem_comp.id QDO _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-bis(bromomethyl)quinoxaline 1,4-dioxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'conoidin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QDO sing 277 n n O3 N3 QDO sing 278 n n C2 N3 QDO doub 279 n y C2 C11 QDO sing 280 n y N3 C4 QDO sing 281 n y C12 C11 QDO sing 282 n n C11 N10 QDO doub 283 n y C4 C5 QDO doub 284 n y C4 C9 QDO sing 285 n y C5 C6 QDO sing 286 n y N10 C9 QDO sing 287 n y N10 O10 QDO sing 288 n n C9 C8 QDO doub 289 n y C6 C7 QDO doub 290 n y C8 C7 QDO sing 291 n y C1 H2 QDO sing 292 n n C1 H3 QDO sing 293 n n C12 H5 QDO sing 294 n n C12 H6 QDO sing 295 n n C5 H8 QDO sing 296 n n C6 H9 QDO sing 297 n n C7 H10 QDO sing 298 n n C8 H11 QDO sing 299 n n C12 BR1 QDO sing 300 n n C1 BR2 QDO sing 301 n n # _atom_sites.entry_id 4KW6 _atom_sites.fract_transf_matrix[1][1] 0.007064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 QDO B 1 201 1 QDO QDO . G 2 QDO C 1 201 2 QDO QDO . H 3 HOH A 1 201 5 HOH HOH . H 3 HOH A 2 202 8 HOH HOH . H 3 HOH A 3 203 15 HOH HOH . I 3 HOH B 1 301 2 HOH HOH . I 3 HOH B 2 302 3 HOH HOH . I 3 HOH B 3 303 6 HOH HOH . I 3 HOH B 4 304 7 HOH HOH . I 3 HOH B 5 305 10 HOH HOH . I 3 HOH B 6 306 13 HOH HOH . I 3 HOH B 7 307 14 HOH HOH . J 3 HOH D 1 201 9 HOH HOH . J 3 HOH D 2 202 12 HOH HOH . K 3 HOH E 1 201 1 HOH HOH . K 3 HOH E 2 202 4 HOH HOH . K 3 HOH E 3 203 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 QDO . . . G 2 39.604 -35.962 98.176 0.5 115.49 ? O3 QDO 201 C 1 HETATM 2 N N3 QDO . . . G 2 40.053 -34.928 98.717 0.5 111.5 ? N3 QDO 201 C 1 HETATM 3 C C2 QDO . . . G 2 39.37 -33.768 98.639 0.5 108.66 ? C2 QDO 201 C 1 HETATM 4 C C1 QDO . . . G 2 38.065 -33.795 97.88 0.5 107.1 ? C1 QDO 201 C 1 HETATM 5 C C11 QDO . . . G 2 39.874 -32.606 99.25 0.5 107.34 ? C11 QDO 201 C 1 HETATM 6 C C12 QDO . . . G 2 39.156 -31.276 99.195 0.5 108.9 ? C12 QDO 201 C 1 HETATM 7 C C4 QDO . . . G 2 41.223 -34.977 99.381 0.5 107.31 ? C4 QDO 201 C 1 HETATM 8 C C5 QDO . . . G 2 41.934 -36.178 99.463 0.5 106 ? C5 QDO 201 C 1 HETATM 9 C C6 QDO . . . G 2 43.145 -36.231 100.147 0.5 108.71 ? C6 QDO 201 C 1 HETATM 10 C C7 QDO . . . G 2 43.656 -35.082 100.756 0.5 111.53 ? C7 QDO 201 C 1 HETATM 11 C C8 QDO . . . G 2 42.949 -33.883 100.678 0.5 111.98 ? C8 QDO 201 C 1 HETATM 12 C C9 QDO . . . G 2 41.729 -33.819 99.991 0.5 110.05 ? C9 QDO 201 C 1 HETATM 13 N N10 QDO . . . G 2 41.045 -32.658 99.914 0.5 109.92 ? N10 QDO 201 C 1 HETATM 14 O O10 QDO . . . G 2 41.497 -31.627 100.456 0.5 114.42 ? O10 QDO 201 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #