data_4KWI # _model_server_result.job_id myK5OiTNwV4wWXlGaumO0Q _model_server_result.datetime_utc '2024-11-26 02:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4KWI # _exptl.entry_id 4KWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.296 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,8-dihydroxy-3-methyltetraphene-6,7,12(5H)-trione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KWI _cell.length_a 92.61 _cell.length_b 92.61 _cell.length_c 106.33 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -53.165 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C19 H12 O5' _chem_comp.formula_weight 320.296 _chem_comp.id 1TJ _chem_comp.mon_nstd_flag . _chem_comp.name 1,8-dihydroxy-3-methyltetraphene-6,7,12(5H)-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 11-DEOXY-6-OXYLANDOMYCINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAN 1TJ sing 1 n n CAN CAJ 1TJ doub 2 n y CAN CAK 1TJ sing 3 n y CAJ CAO 1TJ sing 4 n y CAK CAQ 1TJ doub 5 n y CAO OAE 1TJ sing 6 n n CAO CAS 1TJ doub 7 n y OAD CAV 1TJ doub 8 n n CAQ CAS 1TJ sing 9 n y CAQ CAL 1TJ sing 10 n n CAS CAT 1TJ sing 11 n n CAL CAM 1TJ sing 12 n n CAV CAT 1TJ sing 13 n n CAV CAW 1TJ sing 14 n n CAT CAR 1TJ doub 15 n n CAI CAW 1TJ doub 16 n y CAI CAG 1TJ sing 17 n y CAW CAX 1TJ sing 18 n y CAM CAR 1TJ sing 19 n n CAM OAB 1TJ doub 20 n n CAR CAU 1TJ sing 21 n n CAG CAH 1TJ doub 22 n y CAX CAU 1TJ sing 23 n n CAX CAP 1TJ doub 24 n y CAU OAC 1TJ doub 25 n n CAH CAP 1TJ sing 26 n y CAP OAF 1TJ sing 27 n n OAE H1 1TJ sing 28 n n CAJ H2 1TJ sing 29 n n CAA H3 1TJ sing 30 n n CAA H4 1TJ sing 31 n n CAA H5 1TJ sing 32 n n CAK H6 1TJ sing 33 n n CAL H7 1TJ sing 34 n n CAL H8 1TJ sing 35 n n CAI H9 1TJ sing 36 n n CAG H10 1TJ sing 37 n n CAH H11 1TJ sing 38 n n OAF H12 1TJ sing 39 n n # _atom_sites.entry_id 4KWI _atom_sites.fract_transf_matrix[1][1] 0.010798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 2 NAP NAP . D 3 1TJ A 1 302 1 1TJ DRG . E 4 PEG A 1 303 1 PEG PEG . F 2 NAP B 1 301 1 NAP NAP . G 3 1TJ B 1 302 1 1TJ DRG . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 7 HOH HOH . H 5 HOH A 3 403 10 HOH HOH . H 5 HOH A 4 404 11 HOH HOH . H 5 HOH A 5 405 13 HOH HOH . H 5 HOH A 6 406 15 HOH HOH . H 5 HOH A 7 407 16 HOH HOH . H 5 HOH A 8 408 18 HOH HOH . H 5 HOH A 9 409 20 HOH HOH . H 5 HOH A 10 410 27 HOH HOH . H 5 HOH A 11 411 29 HOH HOH . H 5 HOH A 12 412 32 HOH HOH . H 5 HOH A 13 413 33 HOH HOH . H 5 HOH A 14 414 35 HOH HOH . H 5 HOH A 15 415 38 HOH HOH . H 5 HOH A 16 416 41 HOH HOH . H 5 HOH A 17 417 42 HOH HOH . H 5 HOH A 18 418 44 HOH HOH . H 5 HOH A 19 419 45 HOH HOH . H 5 HOH A 20 420 48 HOH HOH . H 5 HOH A 21 421 51 HOH HOH . H 5 HOH A 22 422 52 HOH HOH . H 5 HOH A 23 423 55 HOH HOH . H 5 HOH A 24 424 58 HOH HOH . H 5 HOH A 25 425 61 HOH HOH . H 5 HOH A 26 426 63 HOH HOH . H 5 HOH A 27 427 65 HOH HOH . H 5 HOH A 28 428 68 HOH HOH . H 5 HOH A 29 429 69 HOH HOH . H 5 HOH A 30 430 70 HOH HOH . H 5 HOH A 31 431 75 HOH HOH . H 5 HOH A 32 432 76 HOH HOH . H 5 HOH A 33 433 77 HOH HOH . H 5 HOH A 34 434 78 HOH HOH . H 5 HOH A 35 435 79 HOH HOH . H 5 HOH A 36 436 80 HOH HOH . H 5 HOH A 37 437 81 HOH HOH . H 5 HOH A 38 438 83 HOH HOH . H 5 HOH A 39 439 84 HOH HOH . H 5 HOH A 40 440 85 HOH HOH . H 5 HOH A 41 441 86 HOH HOH . H 5 HOH A 42 442 87 HOH HOH . H 5 HOH A 43 443 88 HOH HOH . H 5 HOH A 44 444 90 HOH HOH . H 5 HOH A 45 445 92 HOH HOH . H 5 HOH A 46 446 93 HOH HOH . H 5 HOH A 47 447 97 HOH HOH . H 5 HOH A 48 448 98 HOH HOH . H 5 HOH A 49 449 99 HOH HOH . H 5 HOH A 50 450 100 HOH HOH . H 5 HOH A 51 451 101 HOH HOH . H 5 HOH A 52 452 103 HOH HOH . H 5 HOH A 53 453 104 HOH HOH . H 5 HOH A 54 454 105 HOH HOH . H 5 HOH A 55 455 106 HOH HOH . H 5 HOH A 56 456 107 HOH HOH . H 5 HOH A 57 457 108 HOH HOH . H 5 HOH A 58 458 110 HOH HOH . H 5 HOH A 59 459 111 HOH HOH . H 5 HOH A 60 460 112 HOH HOH . H 5 HOH A 61 461 113 HOH HOH . H 5 HOH A 62 462 114 HOH HOH . H 5 HOH A 63 463 116 HOH HOH . H 5 HOH A 64 464 134 HOH HOH . H 5 HOH A 65 465 162 HOH HOH . H 5 HOH A 66 466 163 HOH HOH . H 5 HOH A 67 467 164 HOH HOH . H 5 HOH A 68 468 165 HOH HOH . H 5 HOH A 69 469 166 HOH HOH . H 5 HOH A 70 470 167 HOH HOH . H 5 HOH A 71 471 168 HOH HOH . H 5 HOH A 72 472 169 HOH HOH . H 5 HOH A 73 473 170 HOH HOH . H 5 HOH A 74 474 171 HOH HOH . H 5 HOH A 75 475 172 HOH HOH . H 5 HOH A 76 476 173 HOH HOH . H 5 HOH A 77 477 174 HOH HOH . H 5 HOH A 78 478 175 HOH HOH . H 5 HOH A 79 479 176 HOH HOH . H 5 HOH A 80 480 177 HOH HOH . H 5 HOH A 81 481 178 HOH HOH . H 5 HOH A 82 482 179 HOH HOH . H 5 HOH A 83 483 180 HOH HOH . H 5 HOH A 84 484 181 HOH HOH . H 5 HOH A 85 485 182 HOH HOH . H 5 HOH A 86 486 183 HOH HOH . H 5 HOH A 87 487 186 HOH HOH . H 5 HOH A 88 488 187 HOH HOH . H 5 HOH A 89 489 188 HOH HOH . H 5 HOH A 90 490 189 HOH HOH . H 5 HOH A 91 491 190 HOH HOH . H 5 HOH A 92 492 193 HOH HOH . H 5 HOH A 93 493 194 HOH HOH . H 5 HOH A 94 494 195 HOH HOH . H 5 HOH A 95 495 196 HOH HOH . H 5 HOH A 96 496 197 HOH HOH . H 5 HOH A 97 497 206 HOH HOH . H 5 HOH A 98 498 207 HOH HOH . H 5 HOH A 99 499 208 HOH HOH . H 5 HOH A 100 500 210 HOH HOH . H 5 HOH A 101 501 211 HOH HOH . H 5 HOH A 102 502 216 HOH HOH . H 5 HOH A 103 503 217 HOH HOH . H 5 HOH A 104 504 218 HOH HOH . H 5 HOH A 105 505 219 HOH HOH . H 5 HOH A 106 506 221 HOH HOH . H 5 HOH A 107 507 222 HOH HOH . H 5 HOH A 108 508 223 HOH HOH . H 5 HOH A 109 509 224 HOH HOH . H 5 HOH A 110 510 225 HOH HOH . H 5 HOH A 111 511 226 HOH HOH . H 5 HOH A 112 512 227 HOH HOH . H 5 HOH A 113 513 236 HOH HOH . H 5 HOH A 114 514 237 HOH HOH . H 5 HOH A 115 515 239 HOH HOH . H 5 HOH A 116 516 240 HOH HOH . H 5 HOH A 117 517 248 HOH HOH . H 5 HOH A 118 518 250 HOH HOH . H 5 HOH A 119 519 251 HOH HOH . H 5 HOH A 120 520 252 HOH HOH . H 5 HOH A 121 521 253 HOH HOH . H 5 HOH A 122 522 254 HOH HOH . H 5 HOH A 123 523 255 HOH HOH . H 5 HOH A 124 524 256 HOH HOH . H 5 HOH A 125 525 258 HOH HOH . I 5 HOH B 1 401 2 HOH HOH . I 5 HOH B 2 402 3 HOH HOH . I 5 HOH B 3 403 4 HOH HOH . I 5 HOH B 4 404 5 HOH HOH . I 5 HOH B 5 405 6 HOH HOH . I 5 HOH B 6 406 8 HOH HOH . I 5 HOH B 7 407 9 HOH HOH . I 5 HOH B 8 408 12 HOH HOH . I 5 HOH B 9 409 14 HOH HOH . I 5 HOH B 10 410 17 HOH HOH . I 5 HOH B 11 411 19 HOH HOH . I 5 HOH B 12 412 21 HOH HOH . I 5 HOH B 13 413 22 HOH HOH . I 5 HOH B 14 414 23 HOH HOH . I 5 HOH B 15 415 24 HOH HOH . I 5 HOH B 16 416 25 HOH HOH . I 5 HOH B 17 417 26 HOH HOH . I 5 HOH B 18 418 28 HOH HOH . I 5 HOH B 19 419 30 HOH HOH . I 5 HOH B 20 420 31 HOH HOH . I 5 HOH B 21 421 34 HOH HOH . I 5 HOH B 22 422 39 HOH HOH . I 5 HOH B 23 423 40 HOH HOH . I 5 HOH B 24 424 43 HOH HOH . I 5 HOH B 25 425 46 HOH HOH . I 5 HOH B 26 426 47 HOH HOH . I 5 HOH B 27 427 50 HOH HOH . I 5 HOH B 28 428 53 HOH HOH . I 5 HOH B 29 429 54 HOH HOH . I 5 HOH B 30 430 56 HOH HOH . I 5 HOH B 31 431 57 HOH HOH . I 5 HOH B 32 432 59 HOH HOH . I 5 HOH B 33 433 60 HOH HOH . I 5 HOH B 34 434 62 HOH HOH . I 5 HOH B 35 435 64 HOH HOH . I 5 HOH B 36 436 71 HOH HOH . I 5 HOH B 37 437 72 HOH HOH . I 5 HOH B 38 438 73 HOH HOH . I 5 HOH B 39 439 74 HOH HOH . I 5 HOH B 40 440 82 HOH HOH . I 5 HOH B 41 441 89 HOH HOH . I 5 HOH B 42 442 91 HOH HOH . I 5 HOH B 43 443 96 HOH HOH . I 5 HOH B 44 444 102 HOH HOH . I 5 HOH B 45 445 115 HOH HOH . I 5 HOH B 46 446 117 HOH HOH . I 5 HOH B 47 447 118 HOH HOH . I 5 HOH B 48 448 119 HOH HOH . I 5 HOH B 49 449 120 HOH HOH . I 5 HOH B 50 450 121 HOH HOH . I 5 HOH B 51 451 122 HOH HOH . I 5 HOH B 52 452 123 HOH HOH . I 5 HOH B 53 453 124 HOH HOH . I 5 HOH B 54 454 125 HOH HOH . I 5 HOH B 55 455 126 HOH HOH . I 5 HOH B 56 456 128 HOH HOH . I 5 HOH B 57 457 129 HOH HOH . I 5 HOH B 58 458 130 HOH HOH . I 5 HOH B 59 459 131 HOH HOH . I 5 HOH B 60 460 132 HOH HOH . I 5 HOH B 61 461 133 HOH HOH . I 5 HOH B 62 462 136 HOH HOH . I 5 HOH B 63 463 137 HOH HOH . I 5 HOH B 64 464 138 HOH HOH . I 5 HOH B 65 465 139 HOH HOH . I 5 HOH B 66 466 140 HOH HOH . I 5 HOH B 67 467 144 HOH HOH . I 5 HOH B 68 468 147 HOH HOH . I 5 HOH B 69 469 148 HOH HOH . I 5 HOH B 70 470 150 HOH HOH . I 5 HOH B 71 471 152 HOH HOH . I 5 HOH B 72 472 153 HOH HOH . I 5 HOH B 73 473 154 HOH HOH . I 5 HOH B 74 474 155 HOH HOH . I 5 HOH B 75 475 156 HOH HOH . I 5 HOH B 76 476 157 HOH HOH . I 5 HOH B 77 477 158 HOH HOH . I 5 HOH B 78 478 184 HOH HOH . I 5 HOH B 79 479 185 HOH HOH . I 5 HOH B 80 480 191 HOH HOH . I 5 HOH B 81 481 192 HOH HOH . I 5 HOH B 82 482 198 HOH HOH . I 5 HOH B 83 483 199 HOH HOH . I 5 HOH B 84 484 200 HOH HOH . I 5 HOH B 85 485 201 HOH HOH . I 5 HOH B 86 486 202 HOH HOH . I 5 HOH B 87 487 203 HOH HOH . I 5 HOH B 88 488 204 HOH HOH . I 5 HOH B 89 489 205 HOH HOH . I 5 HOH B 90 490 209 HOH HOH . I 5 HOH B 91 491 213 HOH HOH . I 5 HOH B 92 492 214 HOH HOH . I 5 HOH B 93 493 215 HOH HOH . I 5 HOH B 94 494 220 HOH HOH . I 5 HOH B 95 495 228 HOH HOH . I 5 HOH B 96 496 229 HOH HOH . I 5 HOH B 97 497 230 HOH HOH . I 5 HOH B 98 498 231 HOH HOH . I 5 HOH B 99 499 232 HOH HOH . I 5 HOH B 100 500 233 HOH HOH . I 5 HOH B 101 501 234 HOH HOH . I 5 HOH B 102 502 235 HOH HOH . I 5 HOH B 103 503 238 HOH HOH . I 5 HOH B 104 504 241 HOH HOH . I 5 HOH B 105 505 242 HOH HOH . I 5 HOH B 106 506 243 HOH HOH . I 5 HOH B 107 507 244 HOH HOH . I 5 HOH B 108 508 245 HOH HOH . I 5 HOH B 109 509 246 HOH HOH . I 5 HOH B 110 510 247 HOH HOH . I 5 HOH B 111 511 249 HOH HOH . I 5 HOH B 112 512 257 HOH HOH . I 5 HOH B 113 513 259 HOH HOH . I 5 HOH B 114 514 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1TJ . . . G 3 4.05 -8.947 -9.767 1 37.59 ? OAD 1TJ 302 B 1 HETATM 2 C CAV 1TJ . . . G 3 3.406 -9.649 -10.545 1 35.4 ? CAV 1TJ 302 B 1 HETATM 3 C CAT 1TJ . . . G 3 3.481 -11.052 -10.492 1 36.41 ? CAT 1TJ 302 B 1 HETATM 4 C CAS 1TJ . . . G 3 4.239 -11.822 -9.553 1 39.52 ? CAS 1TJ 302 B 1 HETATM 5 C CAO 1TJ . . . G 3 5.421 -11.416 -8.872 1 41.8 ? CAO 1TJ 302 B 1 HETATM 6 O OAE 1TJ . . . G 3 5.934 -10.174 -9.115 1 40.77 ? OAE 1TJ 302 B 1 HETATM 7 C CAJ 1TJ . . . G 3 6.076 -12.264 -7.963 1 41.92 ? CAJ 1TJ 302 B 1 HETATM 8 C CAN 1TJ . . . G 3 5.568 -13.541 -7.714 1 42.35 ? CAN 1TJ 302 B 1 HETATM 9 C CAA 1TJ . . . G 3 6.197 -14.396 -6.818 1 43.08 ? CAA 1TJ 302 B 1 HETATM 10 C CAK 1TJ . . . G 3 4.413 -13.966 -8.367 1 40.95 ? CAK 1TJ 302 B 1 HETATM 11 C CAQ 1TJ . . . G 3 3.751 -13.122 -9.26 1 40.12 ? CAQ 1TJ 302 B 1 HETATM 12 C CAL 1TJ . . . G 3 2.609 -13.594 -9.923 1 38.63 ? CAL 1TJ 302 B 1 HETATM 13 C CAM 1TJ . . . G 3 2.818 -13.162 -11.229 1 36.97 ? CAM 1TJ 302 B 1 HETATM 14 O OAB 1TJ . . . G 3 3.296 -13.9 -12.094 1 35.91 ? OAB 1TJ 302 B 1 HETATM 15 C CAR 1TJ . . . G 3 2.701 -11.787 -11.391 1 34.98 ? CAR 1TJ 302 B 1 HETATM 16 C CAU 1TJ . . . G 3 1.869 -11.183 -12.346 1 34.32 ? CAU 1TJ 302 B 1 HETATM 17 O OAC 1TJ . . . G 3 1.205 -11.873 -13.132 1 32.34 ? OAC 1TJ 302 B 1 HETATM 18 C CAX 1TJ . . . G 3 1.816 -9.776 -12.398 1 32.82 ? CAX 1TJ 302 B 1 HETATM 19 C CAW 1TJ . . . G 3 2.587 -9.024 -11.495 1 33.71 ? CAW 1TJ 302 B 1 HETATM 20 C CAI 1TJ . . . G 3 2.544 -7.625 -11.54 1 32.44 ? CAI 1TJ 302 B 1 HETATM 21 C CAG 1TJ . . . G 3 1.746 -6.959 -12.47 1 32.02 ? CAG 1TJ 302 B 1 HETATM 22 C CAH 1TJ . . . G 3 0.988 -7.692 -13.382 1 31.2 ? CAH 1TJ 302 B 1 HETATM 23 C CAP 1TJ . . . G 3 1.025 -9.085 -13.337 1 31.38 ? CAP 1TJ 302 B 1 HETATM 24 O OAF 1TJ . . . G 3 0.29 -9.816 -14.211 1 28.63 ? OAF 1TJ 302 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #