data_4KX3 # _model_server_result.job_id 6lnXVxwx2kRNkoOLwsOciA _model_server_result.datetime_utc '2024-11-15 13:55:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4KX3 # _exptl.entry_id 4KX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KX3 _cell.length_a 46.872 _cell.length_b 46.872 _cell.length_c 285.873 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 34 A CYS 34 1_555 G S2 BME . A BME 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc1 A OD2 ASP 49 A ASP 49 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A O ASN 51 A ASN 51 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A OD1 ASP 238 A ASP 238 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 B OP1 DT . A DT 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 C MG MG . A MG 302 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 C MG MG . A MG 302 1_555 K O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 129 n n C1 C2 EDO sing 130 n n C1 H11 EDO sing 131 n n C1 H12 EDO sing 132 n n O1 HO1 EDO sing 133 n n C2 O2 EDO sing 134 n n C2 H21 EDO sing 135 n n C2 H22 EDO sing 136 n n O2 HO2 EDO sing 137 n n # _atom_sites.entry_id 4KX3 _atom_sites.fract_transf_matrix[1][1] 0.021335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DT A 1 301 1 DT Td . C 3 MG A 1 302 1 MG MG . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 3 EDO EDO . F 4 EDO A 1 305 4 EDO EDO . G 5 BME A 1 306 5 BME BME . H 5 BME A 1 307 6 BME BME . I 6 EPE A 1 308 7 EPE EPE . J 4 EDO A 1 309 1 EDO EDO . K 7 HOH A 1 401 1 HOH HOH . K 7 HOH A 2 402 2 HOH HOH . K 7 HOH A 3 403 3 HOH HOH . K 7 HOH A 4 404 4 HOH HOH . K 7 HOH A 5 405 5 HOH HOH . K 7 HOH A 6 406 6 HOH HOH . K 7 HOH A 7 407 7 HOH HOH . K 7 HOH A 8 408 8 HOH HOH . K 7 HOH A 9 409 9 HOH HOH . K 7 HOH A 10 410 10 HOH HOH . K 7 HOH A 11 411 11 HOH HOH . K 7 HOH A 12 412 12 HOH HOH . K 7 HOH A 13 413 13 HOH HOH . K 7 HOH A 14 414 14 HOH HOH . K 7 HOH A 15 415 15 HOH HOH . K 7 HOH A 16 416 16 HOH HOH . K 7 HOH A 17 417 17 HOH HOH . K 7 HOH A 18 418 18 HOH HOH . K 7 HOH A 19 419 19 HOH HOH . K 7 HOH A 20 420 20 HOH HOH . K 7 HOH A 21 421 21 HOH HOH . K 7 HOH A 22 422 22 HOH HOH . K 7 HOH A 23 423 23 HOH HOH . K 7 HOH A 24 424 24 HOH HOH . K 7 HOH A 25 425 25 HOH HOH . K 7 HOH A 26 426 26 HOH HOH . K 7 HOH A 27 427 27 HOH HOH . K 7 HOH A 28 428 28 HOH HOH . K 7 HOH A 29 429 29 HOH HOH . K 7 HOH A 30 430 30 HOH HOH . K 7 HOH A 31 431 31 HOH HOH . K 7 HOH A 32 432 32 HOH HOH . K 7 HOH A 33 433 33 HOH HOH . K 7 HOH A 34 434 34 HOH HOH . K 7 HOH A 35 435 35 HOH HOH . K 7 HOH A 36 436 36 HOH HOH . K 7 HOH A 37 437 37 HOH HOH . K 7 HOH A 38 438 38 HOH HOH . K 7 HOH A 39 439 39 HOH HOH . K 7 HOH A 40 440 40 HOH HOH . K 7 HOH A 41 441 41 HOH HOH . K 7 HOH A 42 442 42 HOH HOH . K 7 HOH A 43 443 43 HOH HOH . K 7 HOH A 44 444 44 HOH HOH . K 7 HOH A 45 445 45 HOH HOH . K 7 HOH A 46 446 46 HOH HOH . K 7 HOH A 47 447 47 HOH HOH . K 7 HOH A 48 448 48 HOH HOH . K 7 HOH A 49 449 49 HOH HOH . K 7 HOH A 50 450 50 HOH HOH . K 7 HOH A 51 451 51 HOH HOH . K 7 HOH A 52 452 52 HOH HOH . K 7 HOH A 53 453 53 HOH HOH . K 7 HOH A 54 454 54 HOH HOH . K 7 HOH A 55 455 55 HOH HOH . K 7 HOH A 56 456 56 HOH HOH . K 7 HOH A 57 457 57 HOH HOH . K 7 HOH A 58 458 58 HOH HOH . K 7 HOH A 59 459 59 HOH HOH . K 7 HOH A 60 460 60 HOH HOH . K 7 HOH A 61 461 61 HOH HOH . K 7 HOH A 62 462 62 HOH HOH . K 7 HOH A 63 463 63 HOH HOH . K 7 HOH A 64 464 64 HOH HOH . K 7 HOH A 65 465 65 HOH HOH . K 7 HOH A 66 466 66 HOH HOH . K 7 HOH A 67 467 67 HOH HOH . K 7 HOH A 68 468 68 HOH HOH . K 7 HOH A 69 469 69 HOH HOH . K 7 HOH A 70 470 70 HOH HOH . K 7 HOH A 71 471 71 HOH HOH . K 7 HOH A 72 472 72 HOH HOH . K 7 HOH A 73 473 73 HOH HOH . K 7 HOH A 74 474 74 HOH HOH . K 7 HOH A 75 475 75 HOH HOH . K 7 HOH A 76 476 76 HOH HOH . K 7 HOH A 77 477 77 HOH HOH . K 7 HOH A 78 478 78 HOH HOH . K 7 HOH A 79 479 79 HOH HOH . K 7 HOH A 80 480 80 HOH HOH . K 7 HOH A 81 481 81 HOH HOH . K 7 HOH A 82 482 82 HOH HOH . K 7 HOH A 83 483 83 HOH HOH . K 7 HOH A 84 484 84 HOH HOH . K 7 HOH A 85 485 85 HOH HOH . K 7 HOH A 86 486 86 HOH HOH . K 7 HOH A 87 487 87 HOH HOH . K 7 HOH A 88 488 88 HOH HOH . K 7 HOH A 89 489 89 HOH HOH . K 7 HOH A 90 490 90 HOH HOH . K 7 HOH A 91 491 91 HOH HOH . K 7 HOH A 92 492 92 HOH HOH . K 7 HOH A 93 493 94 HOH HOH . K 7 HOH A 94 494 95 HOH HOH . K 7 HOH A 95 495 96 HOH HOH . K 7 HOH A 96 496 97 HOH HOH . K 7 HOH A 97 497 98 HOH HOH . K 7 HOH A 98 498 99 HOH HOH . K 7 HOH A 99 499 100 HOH HOH . K 7 HOH A 100 500 101 HOH HOH . K 7 HOH A 101 501 102 HOH HOH . K 7 HOH A 102 502 103 HOH HOH . K 7 HOH A 103 503 104 HOH HOH . K 7 HOH A 104 504 105 HOH HOH . K 7 HOH A 105 505 106 HOH HOH . K 7 HOH A 106 506 107 HOH HOH . K 7 HOH A 107 507 108 HOH HOH . K 7 HOH A 108 508 109 HOH HOH . K 7 HOH A 109 509 110 HOH HOH . K 7 HOH A 110 510 111 HOH HOH . K 7 HOH A 111 511 112 HOH HOH . K 7 HOH A 112 512 113 HOH HOH . K 7 HOH A 113 513 114 HOH HOH . K 7 HOH A 114 514 115 HOH HOH . K 7 HOH A 115 515 116 HOH HOH . K 7 HOH A 116 516 117 HOH HOH . K 7 HOH A 117 517 118 HOH HOH . K 7 HOH A 118 518 119 HOH HOH . K 7 HOH A 119 519 120 HOH HOH . K 7 HOH A 120 520 121 HOH HOH . K 7 HOH A 121 521 122 HOH HOH . K 7 HOH A 122 522 123 HOH HOH . K 7 HOH A 123 523 124 HOH HOH . K 7 HOH A 124 524 125 HOH HOH . K 7 HOH A 125 525 126 HOH HOH . K 7 HOH A 126 526 127 HOH HOH . K 7 HOH A 127 527 128 HOH HOH . K 7 HOH A 128 528 129 HOH HOH . K 7 HOH A 129 529 130 HOH HOH . K 7 HOH A 130 530 131 HOH HOH . K 7 HOH A 131 531 132 HOH HOH . K 7 HOH A 132 532 133 HOH HOH . K 7 HOH A 133 533 134 HOH HOH . K 7 HOH A 134 534 135 HOH HOH . K 7 HOH A 135 535 136 HOH HOH . K 7 HOH A 136 536 137 HOH HOH . K 7 HOH A 137 537 138 HOH HOH . K 7 HOH A 138 538 139 HOH HOH . K 7 HOH A 139 539 140 HOH HOH . K 7 HOH A 140 540 142 HOH HOH . K 7 HOH A 141 541 143 HOH HOH . K 7 HOH A 142 542 144 HOH HOH . K 7 HOH A 143 543 145 HOH HOH . K 7 HOH A 144 544 147 HOH HOH . K 7 HOH A 145 545 148 HOH HOH . K 7 HOH A 146 546 149 HOH HOH . K 7 HOH A 147 547 150 HOH HOH . K 7 HOH A 148 548 151 HOH HOH . K 7 HOH A 149 549 152 HOH HOH . K 7 HOH A 150 550 153 HOH HOH . K 7 HOH A 151 551 154 HOH HOH . K 7 HOH A 152 552 155 HOH HOH . K 7 HOH A 153 553 156 HOH HOH . K 7 HOH A 154 554 158 HOH HOH . K 7 HOH A 155 555 159 HOH HOH . K 7 HOH A 156 556 160 HOH HOH . K 7 HOH A 157 557 161 HOH HOH . K 7 HOH A 158 558 162 HOH HOH . K 7 HOH A 159 559 163 HOH HOH . K 7 HOH A 160 560 164 HOH HOH . K 7 HOH A 161 561 165 HOH HOH . K 7 HOH A 162 562 166 HOH HOH . K 7 HOH A 163 563 167 HOH HOH . K 7 HOH A 164 564 168 HOH HOH . K 7 HOH A 165 565 169 HOH HOH . K 7 HOH A 166 566 170 HOH HOH . K 7 HOH A 167 567 171 HOH HOH . K 7 HOH A 168 568 172 HOH HOH . K 7 HOH A 169 569 173 HOH HOH . K 7 HOH A 170 570 174 HOH HOH . K 7 HOH A 171 571 175 HOH HOH . K 7 HOH A 172 572 176 HOH HOH . K 7 HOH A 173 573 177 HOH HOH . K 7 HOH A 174 574 178 HOH HOH . K 7 HOH A 175 575 179 HOH HOH . K 7 HOH A 176 576 180 HOH HOH . K 7 HOH A 177 577 181 HOH HOH . K 7 HOH A 178 578 182 HOH HOH . K 7 HOH A 179 579 183 HOH HOH . K 7 HOH A 180 580 184 HOH HOH . K 7 HOH A 181 581 185 HOH HOH . K 7 HOH A 182 582 186 HOH HOH . K 7 HOH A 183 583 187 HOH HOH . K 7 HOH A 184 584 188 HOH HOH . K 7 HOH A 185 585 189 HOH HOH . K 7 HOH A 186 586 190 HOH HOH . K 7 HOH A 187 587 191 HOH HOH . K 7 HOH A 188 588 192 HOH HOH . K 7 HOH A 189 589 193 HOH HOH . K 7 HOH A 190 590 194 HOH HOH . K 7 HOH A 191 591 195 HOH HOH . K 7 HOH A 192 592 196 HOH HOH . K 7 HOH A 193 593 198 HOH HOH . K 7 HOH A 194 594 199 HOH HOH . K 7 HOH A 195 595 200 HOH HOH . K 7 HOH A 196 596 201 HOH HOH . K 7 HOH A 197 597 202 HOH HOH . K 7 HOH A 198 598 204 HOH HOH . K 7 HOH A 199 599 205 HOH HOH . K 7 HOH A 200 600 206 HOH HOH . K 7 HOH A 201 601 207 HOH HOH . K 7 HOH A 202 602 208 HOH HOH . K 7 HOH A 203 603 209 HOH HOH . K 7 HOH A 204 604 210 HOH HOH . K 7 HOH A 205 605 211 HOH HOH . K 7 HOH A 206 606 212 HOH HOH . K 7 HOH A 207 607 213 HOH HOH . K 7 HOH A 208 608 214 HOH HOH . K 7 HOH A 209 609 215 HOH HOH . K 7 HOH A 210 610 216 HOH HOH . K 7 HOH A 211 611 217 HOH HOH . K 7 HOH A 212 612 218 HOH HOH . K 7 HOH A 213 613 219 HOH HOH . K 7 HOH A 214 614 220 HOH HOH . K 7 HOH A 215 615 221 HOH HOH . K 7 HOH A 216 616 223 HOH HOH . K 7 HOH A 217 617 224 HOH HOH . K 7 HOH A 218 618 225 HOH HOH . K 7 HOH A 219 619 226 HOH HOH . K 7 HOH A 220 620 227 HOH HOH . K 7 HOH A 221 621 229 HOH HOH . K 7 HOH A 222 622 230 HOH HOH . K 7 HOH A 223 623 231 HOH HOH . K 7 HOH A 224 624 232 HOH HOH . K 7 HOH A 225 625 233 HOH HOH . K 7 HOH A 226 626 234 HOH HOH . K 7 HOH A 227 627 235 HOH HOH . K 7 HOH A 228 628 236 HOH HOH . K 7 HOH A 229 629 237 HOH HOH . K 7 HOH A 230 630 238 HOH HOH . K 7 HOH A 231 631 239 HOH HOH . K 7 HOH A 232 632 241 HOH HOH . K 7 HOH A 233 633 242 HOH HOH . K 7 HOH A 234 634 243 HOH HOH . K 7 HOH A 235 635 244 HOH HOH . K 7 HOH A 236 636 245 HOH HOH . K 7 HOH A 237 637 246 HOH HOH . K 7 HOH A 238 638 247 HOH HOH . K 7 HOH A 239 639 248 HOH HOH . K 7 HOH A 240 640 249 HOH HOH . K 7 HOH A 241 641 250 HOH HOH . K 7 HOH A 242 642 251 HOH HOH . K 7 HOH A 243 643 252 HOH HOH . K 7 HOH A 244 644 253 HOH HOH . K 7 HOH A 245 645 254 HOH HOH . K 7 HOH A 246 646 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -10.726 -18.888 36.519 1 34.84 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 4 -11.169 -20.043 35.817 1 43.3 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 4 -9.479 -19.105 37.377 1 36.98 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 4 -8.432 -18.103 37.199 1 31.18 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 445 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #