data_4KXI # _model_server_result.job_id Ce9RrxGY3KdTu8Frz7iYOA _model_server_result.datetime_utc '2024-11-17 15:45:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4KXI # _exptl.entry_id 4KXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.008 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(N1E,N2E)-N1,N2-bis(pyridine-2-ylmethylene)propane-1,2-diamine,nickel(II) salt' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KXI _cell.length_a 77.589 _cell.length_b 77.589 _cell.length_c 36.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OD2 ASP 52 A ASP 52 1_555 C NI SNF . A SNF 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A OXT LEU 129 A LEU 129 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc3 A O LEU 129 A LEU 129 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc4 B NI NI . A NI 201 1_555 E O2 LCP . A LCP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C15 H16 N4 Ni' _chem_comp.formula_weight 311.008 _chem_comp.id SNF _chem_comp.mon_nstd_flag . _chem_comp.name '(N1E, N2E)-N1, N2-bis(pyridine-2-ylmethylene)propane-1,2-diamine, nickel(II) salt' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C18 SNF sing 294 n n C18 N19 SNF sing 295 n n C18 C16 SNF sing 296 n n C20 N19 SNF doub 297 n n C20 C9 SNF sing 298 n n N19 NI SNF sing 299 n n C16 N15 SNF sing 300 n n C10 C9 SNF doub 301 n y C10 C11 SNF sing 302 n y C9 N8 SNF sing 303 n y N15 NI SNF sing 304 n n N15 C14 SNF doub 305 n n C11 C12 SNF doub 306 n y N8 NI SNF sing 307 n n N8 C7 SNF doub 308 n y NI N2 SNF sing 309 n n C14 C1 SNF sing 310 n n C12 C7 SNF sing 311 n y C1 N2 SNF doub 312 n y C1 C6 SNF sing 313 n y N2 C3 SNF sing 314 n y C6 C5 SNF doub 315 n y C3 C4 SNF doub 316 n y C5 C4 SNF sing 317 n y C10 H1 SNF sing 318 n n C11 H2 SNF sing 319 n n C12 H3 SNF sing 320 n n C7 H4 SNF sing 321 n n C20 H5 SNF sing 322 n n C18 H7 SNF sing 323 n n C21 H8 SNF sing 324 n n C21 H9 SNF sing 325 n n C21 H10 SNF sing 326 n n C16 H11 SNF sing 327 n n C16 H12 SNF sing 328 n n C14 H13 SNF sing 329 n n C3 H15 SNF sing 330 n n C4 H16 SNF sing 331 n n C5 H17 SNF sing 332 n n C6 H18 SNF sing 333 n n # _atom_sites.entry_id 4KXI _atom_sites.fract_transf_matrix[1][1] 0.012888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 3 NI NI . C 3 SNF A 1 202 1 SNF SCF . D 4 LCP A 1 203 2 LCP LCP . E 4 LCP A 1 204 3 LCP LCP . F 4 LCP A 1 205 4 LCP LCP . G 4 LCP A 1 206 5 LCP LCP . H 4 LCP A 1 207 7 LCP LCP . I 5 CL A 1 208 6 CL CL . J 6 HOH A 1 301 1 HOH HOH . J 6 HOH A 2 302 2 HOH HOH . J 6 HOH A 3 303 3 HOH HOH . J 6 HOH A 4 304 4 HOH HOH . J 6 HOH A 5 305 5 HOH HOH . J 6 HOH A 6 306 6 HOH HOH . J 6 HOH A 7 307 7 HOH HOH . J 6 HOH A 8 308 8 HOH HOH . J 6 HOH A 9 309 9 HOH HOH . J 6 HOH A 10 310 10 HOH HOH . J 6 HOH A 11 311 11 HOH HOH . J 6 HOH A 12 312 12 HOH HOH . J 6 HOH A 13 313 13 HOH HOH . J 6 HOH A 14 314 14 HOH HOH . J 6 HOH A 15 315 15 HOH HOH . J 6 HOH A 16 316 16 HOH HOH . J 6 HOH A 17 317 17 HOH HOH . J 6 HOH A 18 318 18 HOH HOH . J 6 HOH A 19 319 19 HOH HOH . J 6 HOH A 20 320 20 HOH HOH . J 6 HOH A 21 321 21 HOH HOH . J 6 HOH A 22 322 22 HOH HOH . J 6 HOH A 23 323 23 HOH HOH . J 6 HOH A 24 324 24 HOH HOH . J 6 HOH A 25 325 25 HOH HOH . J 6 HOH A 26 326 26 HOH HOH . J 6 HOH A 27 327 27 HOH HOH . J 6 HOH A 28 328 28 HOH HOH . J 6 HOH A 29 329 29 HOH HOH . J 6 HOH A 30 330 30 HOH HOH . J 6 HOH A 31 331 31 HOH HOH . J 6 HOH A 32 332 32 HOH HOH . J 6 HOH A 33 333 33 HOH HOH . J 6 HOH A 34 334 34 HOH HOH . J 6 HOH A 35 335 35 HOH HOH . J 6 HOH A 36 336 36 HOH HOH . J 6 HOH A 37 337 37 HOH HOH . J 6 HOH A 38 338 38 HOH HOH . J 6 HOH A 39 339 39 HOH HOH . J 6 HOH A 40 340 40 HOH HOH . J 6 HOH A 41 341 41 HOH HOH . J 6 HOH A 42 342 42 HOH HOH . J 6 HOH A 43 343 43 HOH HOH . J 6 HOH A 44 344 44 HOH HOH . J 6 HOH A 45 345 45 HOH HOH . J 6 HOH A 46 346 46 HOH HOH . J 6 HOH A 47 347 47 HOH HOH . J 6 HOH A 48 348 48 HOH HOH . J 6 HOH A 49 349 49 HOH HOH . J 6 HOH A 50 350 50 HOH HOH . J 6 HOH A 51 351 51 HOH HOH . J 6 HOH A 52 352 52 HOH HOH . J 6 HOH A 53 353 53 HOH HOH . J 6 HOH A 54 354 54 HOH HOH . J 6 HOH A 55 355 55 HOH HOH . J 6 HOH A 56 356 56 HOH HOH . J 6 HOH A 57 357 57 HOH HOH . J 6 HOH A 58 358 58 HOH HOH . J 6 HOH A 59 359 59 HOH HOH . J 6 HOH A 60 360 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 SNF . . . C 3 4.233 22.199 20.094 1 88.33 ? C10 SNF 202 A 1 HETATM 2 C C11 SNF . . . C 3 3.325 21.876 21.09 1 91.38 ? C11 SNF 202 A 1 HETATM 3 C C12 SNF . . . C 3 3.603 22.177 22.426 1 95.66 ? C12 SNF 202 A 1 HETATM 4 C C7 SNF . . . C 3 4.843 22.795 22.684 1 92.4 ? C7 SNF 202 A 1 HETATM 5 N N8 SNF . . . C 3 5.732 23.089 21.613 1 87.38 ? N8 SNF 202 A 1 HETATM 6 C C9 SNF . . . C 3 5.429 22.803 20.35 1 82.94 ? C9 SNF 202 A 1 HETATM 7 C C20 SNF . . . C 3 6.24 23.046 19.236 1 74.68 ? C20 SNF 202 A 1 HETATM 8 N N19 SNF . . . C 3 7.643 23.436 19.572 1 64.1 ? N19 SNF 202 A 1 HETATM 9 C C18 SNF . . . C 3 8.776 23.159 18.582 1 70.72 ? C18 SNF 202 A 1 HETATM 10 C C21 SNF . . . C 3 9.359 21.759 18.323 1 62.82 ? C21 SNF 202 A 1 HETATM 11 C C16 SNF . . . C 3 9.69 23.745 19.612 1 83.76 ? C16 SNF 202 A 1 HETATM 12 N N15 SNF . . . C 3 9.188 23.418 21.021 1 95.7 ? N15 SNF 202 A 1 HETATM 13 C C14 SNF . . . C 3 9.817 23.977 22.269 1 108.83 ? C14 SNF 202 A 1 HETATM 14 C C1 SNF . . . C 3 9.17 23.716 23.487 1 120.05 ? C1 SNF 202 A 1 HETATM 15 N N2 SNF . . . C 3 8.093 22.934 23.565 1 118.13 ? N2 SNF 202 A 1 HETATM 16 C C3 SNF . . . C 3 7.413 22.661 24.783 1 114.82 ? C3 SNF 202 A 1 HETATM 17 C C4 SNF . . . C 3 7.9 23.253 25.957 1 125.42 ? C4 SNF 202 A 1 HETATM 18 C C5 SNF . . . C 3 9.023 24.073 25.866 1 124.13 ? C5 SNF 202 A 1 HETATM 19 C C6 SNF . . . C 3 9.625 24.278 24.643 1 121.39 ? C6 SNF 202 A 1 HETATM 20 NI NI SNF . . . C 3 7.526 23.089 21.703 1 64.66 2 NI SNF 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #