data_4KXP # _model_server_result.job_id iuFm3wQJxltE0TlvlpiiGA _model_server_result.datetime_utc '2024-10-20 19:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 4KXP # _exptl.entry_id 4KXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KXP _cell.length_a 59.544 _cell.length_b 166.382 _cell.length_c 78.946 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 98 A GLU 97 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OD2 ASP 119 A ASP 118 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc3 A OD1 ASP 119 A ASP 118 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A O LEU 121 A LEU 120 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc5 A OD2 ASP 122 A ASP 121 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc6 A OE2 GLU 281 A GLU 280 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc7 D O2 PO4 . A PO4 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc8 D O1 PO4 . A PO4 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc9 D O1 PO4 . A PO4 402 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc10 B OD2 ASP 75 B ASP 74 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc11 B OD2 ASP 119 B ASP 118 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc12 B O LEU 121 B LEU 120 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc13 B OD2 ASP 122 B ASP 121 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc14 B OE1 GLU 281 B GLU 280 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc15 I O3 PO4 . B PO4 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KXP _atom_sites.fract_transf_matrix[1][1] 0.016794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 401 338 F6P F6P . D 3 PO4 A 1 402 434 PO4 PO4 . E 4 MG A 1 403 341 MG MG . F 4 MG A 1 404 342 MG MG . G 5 AMP A 1 405 435 AMP AMP . H 2 F6P B 1 401 338 F6P F6P . I 3 PO4 B 1 402 435 PO4 PO4 . J 4 MG B 1 403 343 MG MG . K 4 MG B 1 404 344 MG MG . L 5 AMP B 1 405 339 AMP AMP . M 6 HOH A 1 501 504 HOH HOH . M 6 HOH A 2 502 505 HOH HOH . M 6 HOH A 3 503 507 HOH HOH . M 6 HOH A 4 504 512 HOH HOH . M 6 HOH A 5 505 515 HOH HOH . M 6 HOH A 6 506 516 HOH HOH . M 6 HOH A 7 507 519 HOH HOH . M 6 HOH A 8 508 520 HOH HOH . M 6 HOH A 9 509 522 HOH HOH . M 6 HOH A 10 510 526 HOH HOH . M 6 HOH A 11 511 528 HOH HOH . M 6 HOH A 12 512 530 HOH HOH . M 6 HOH A 13 513 532 HOH HOH . M 6 HOH A 14 514 535 HOH HOH . M 6 HOH A 15 515 536 HOH HOH . M 6 HOH A 16 516 537 HOH HOH . M 6 HOH A 17 517 538 HOH HOH . M 6 HOH A 18 518 539 HOH HOH . M 6 HOH A 19 519 545 HOH HOH . M 6 HOH A 20 520 546 HOH HOH . M 6 HOH A 21 521 548 HOH HOH . M 6 HOH A 22 522 549 HOH HOH . M 6 HOH A 23 523 550 HOH HOH . M 6 HOH A 24 524 553 HOH HOH . M 6 HOH A 25 525 554 HOH HOH . M 6 HOH A 26 526 555 HOH HOH . M 6 HOH A 27 527 559 HOH HOH . M 6 HOH A 28 528 560 HOH HOH . M 6 HOH A 29 529 561 HOH HOH . M 6 HOH A 30 530 562 HOH HOH . M 6 HOH A 31 531 563 HOH HOH . M 6 HOH A 32 532 565 HOH HOH . M 6 HOH A 33 533 570 HOH HOH . M 6 HOH A 34 534 572 HOH HOH . M 6 HOH A 35 535 573 HOH HOH . M 6 HOH A 36 536 574 HOH HOH . M 6 HOH A 37 537 575 HOH HOH . M 6 HOH A 38 538 577 HOH HOH . M 6 HOH A 39 539 578 HOH HOH . M 6 HOH A 40 540 579 HOH HOH . M 6 HOH A 41 541 581 HOH HOH . M 6 HOH A 42 542 582 HOH HOH . M 6 HOH A 43 543 583 HOH HOH . M 6 HOH A 44 544 585 HOH HOH . M 6 HOH A 45 545 590 HOH HOH . M 6 HOH A 46 546 591 HOH HOH . M 6 HOH A 47 547 593 HOH HOH . M 6 HOH A 48 548 596 HOH HOH . M 6 HOH A 49 549 599 HOH HOH . M 6 HOH A 50 550 600 HOH HOH . M 6 HOH A 51 551 601 HOH HOH . M 6 HOH A 52 552 602 HOH HOH . M 6 HOH A 53 553 603 HOH HOH . M 6 HOH A 54 554 604 HOH HOH . M 6 HOH A 55 555 605 HOH HOH . M 6 HOH A 56 556 606 HOH HOH . M 6 HOH A 57 557 608 HOH HOH . M 6 HOH A 58 558 610 HOH HOH . N 6 HOH B 1 501 501 HOH HOH . N 6 HOH B 2 502 502 HOH HOH . N 6 HOH B 3 503 503 HOH HOH . N 6 HOH B 4 504 506 HOH HOH . N 6 HOH B 5 505 508 HOH HOH . N 6 HOH B 6 506 509 HOH HOH . N 6 HOH B 7 507 510 HOH HOH . N 6 HOH B 8 508 511 HOH HOH . N 6 HOH B 9 509 513 HOH HOH . N 6 HOH B 10 510 514 HOH HOH . N 6 HOH B 11 511 517 HOH HOH . N 6 HOH B 12 512 518 HOH HOH . N 6 HOH B 13 513 521 HOH HOH . N 6 HOH B 14 514 523 HOH HOH . N 6 HOH B 15 515 524 HOH HOH . N 6 HOH B 16 516 525 HOH HOH . N 6 HOH B 17 517 527 HOH HOH . N 6 HOH B 18 518 529 HOH HOH . N 6 HOH B 19 519 531 HOH HOH . N 6 HOH B 20 520 533 HOH HOH . N 6 HOH B 21 521 534 HOH HOH . N 6 HOH B 22 522 540 HOH HOH . N 6 HOH B 23 523 541 HOH HOH . N 6 HOH B 24 524 542 HOH HOH . N 6 HOH B 25 525 543 HOH HOH . N 6 HOH B 26 526 544 HOH HOH . N 6 HOH B 27 527 547 HOH HOH . N 6 HOH B 28 528 551 HOH HOH . N 6 HOH B 29 529 552 HOH HOH . N 6 HOH B 30 530 556 HOH HOH . N 6 HOH B 31 531 557 HOH HOH . N 6 HOH B 32 532 558 HOH HOH . N 6 HOH B 33 533 564 HOH HOH . N 6 HOH B 34 534 566 HOH HOH . N 6 HOH B 35 535 567 HOH HOH . N 6 HOH B 36 536 568 HOH HOH . N 6 HOH B 37 537 569 HOH HOH . N 6 HOH B 38 538 571 HOH HOH . N 6 HOH B 39 539 576 HOH HOH . N 6 HOH B 40 540 580 HOH HOH . N 6 HOH B 41 541 584 HOH HOH . N 6 HOH B 42 542 586 HOH HOH . N 6 HOH B 43 543 587 HOH HOH . N 6 HOH B 44 544 588 HOH HOH . N 6 HOH B 45 545 589 HOH HOH . N 6 HOH B 46 546 592 HOH HOH . N 6 HOH B 47 547 594 HOH HOH . N 6 HOH B 48 548 595 HOH HOH . N 6 HOH B 49 549 597 HOH HOH . N 6 HOH B 50 550 598 HOH HOH . N 6 HOH B 51 551 607 HOH HOH . N 6 HOH B 52 552 609 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.18 _atom_site.Cartn_y -24.195 _atom_site.Cartn_z -29.768 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #