data_4KXP
#
_model_server_result.job_id            DiQYxOgh8GrqoeJf9yuinw 
_model_server_result.datetime_utc      '2024-11-22 13:37:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":405}' 
#
_entry.id    4KXP 
#
_exptl.entry_id    4KXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KXP 
_cell.length_a            59.544 
_cell.length_b            166.382 
_cell.length_c            78.946 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 98 A GLU 97 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc2 A OD2 ASP 119 A ASP 118 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc3 A OD1 ASP 119 A ASP 118 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc4 A O LEU 121 A LEU 120 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc5 A OD2 ASP 122 A ASP 121 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
metalc ? metalc6 A OE2 GLU 281 A GLU 280 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
metalc ? metalc7 D O2 PO4 . A PO4 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc8 D O1 PO4 . A PO4 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc9 D O1 PO4 . A PO4 402 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc10 B OD2 ASP 75 B ASP 74 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc11 B OD2 ASP 119 B ASP 118 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc12 B O LEU 121 B LEU 120 1_555 K MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc13 B OD2 ASP 122 B ASP 121 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc14 B OE1 GLU 281 B GLU 280 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc15 I O3 PO4 . B PO4 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4KXP 
_atom_sites.fract_transf_matrix[1][1]    0.016794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F6P A 1 401 338 F6P F6P . 
D 3 PO4 A 1 402 434 PO4 PO4 . 
E 4 MG A 1 403 341 MG MG . 
F 4 MG A 1 404 342 MG MG . 
G 5 AMP A 1 405 435 AMP AMP . 
H 2 F6P B 1 401 338 F6P F6P . 
I 3 PO4 B 1 402 435 PO4 PO4 . 
J 4 MG B 1 403 343 MG MG . 
K 4 MG B 1 404 344 MG MG . 
L 5 AMP B 1 405 339 AMP AMP . 
M 6 HOH A 1 501 504 HOH HOH . 
M 6 HOH A 2 502 505 HOH HOH . 
M 6 HOH A 3 503 507 HOH HOH . 
M 6 HOH A 4 504 512 HOH HOH . 
M 6 HOH A 5 505 515 HOH HOH . 
M 6 HOH A 6 506 516 HOH HOH . 
M 6 HOH A 7 507 519 HOH HOH . 
M 6 HOH A 8 508 520 HOH HOH . 
M 6 HOH A 9 509 522 HOH HOH . 
M 6 HOH A 10 510 526 HOH HOH . 
M 6 HOH A 11 511 528 HOH HOH . 
M 6 HOH A 12 512 530 HOH HOH . 
M 6 HOH A 13 513 532 HOH HOH . 
M 6 HOH A 14 514 535 HOH HOH . 
M 6 HOH A 15 515 536 HOH HOH . 
M 6 HOH A 16 516 537 HOH HOH . 
M 6 HOH A 17 517 538 HOH HOH . 
M 6 HOH A 18 518 539 HOH HOH . 
M 6 HOH A 19 519 545 HOH HOH . 
M 6 HOH A 20 520 546 HOH HOH . 
M 6 HOH A 21 521 548 HOH HOH . 
M 6 HOH A 22 522 549 HOH HOH . 
M 6 HOH A 23 523 550 HOH HOH . 
M 6 HOH A 24 524 553 HOH HOH . 
M 6 HOH A 25 525 554 HOH HOH . 
M 6 HOH A 26 526 555 HOH HOH . 
M 6 HOH A 27 527 559 HOH HOH . 
M 6 HOH A 28 528 560 HOH HOH . 
M 6 HOH A 29 529 561 HOH HOH . 
M 6 HOH A 30 530 562 HOH HOH . 
M 6 HOH A 31 531 563 HOH HOH . 
M 6 HOH A 32 532 565 HOH HOH . 
M 6 HOH A 33 533 570 HOH HOH . 
M 6 HOH A 34 534 572 HOH HOH . 
M 6 HOH A 35 535 573 HOH HOH . 
M 6 HOH A 36 536 574 HOH HOH . 
M 6 HOH A 37 537 575 HOH HOH . 
M 6 HOH A 38 538 577 HOH HOH . 
M 6 HOH A 39 539 578 HOH HOH . 
M 6 HOH A 40 540 579 HOH HOH . 
M 6 HOH A 41 541 581 HOH HOH . 
M 6 HOH A 42 542 582 HOH HOH . 
M 6 HOH A 43 543 583 HOH HOH . 
M 6 HOH A 44 544 585 HOH HOH . 
M 6 HOH A 45 545 590 HOH HOH . 
M 6 HOH A 46 546 591 HOH HOH . 
M 6 HOH A 47 547 593 HOH HOH . 
M 6 HOH A 48 548 596 HOH HOH . 
M 6 HOH A 49 549 599 HOH HOH . 
M 6 HOH A 50 550 600 HOH HOH . 
M 6 HOH A 51 551 601 HOH HOH . 
M 6 HOH A 52 552 602 HOH HOH . 
M 6 HOH A 53 553 603 HOH HOH . 
M 6 HOH A 54 554 604 HOH HOH . 
M 6 HOH A 55 555 605 HOH HOH . 
M 6 HOH A 56 556 606 HOH HOH . 
M 6 HOH A 57 557 608 HOH HOH . 
M 6 HOH A 58 558 610 HOH HOH . 
N 6 HOH B 1 501 501 HOH HOH . 
N 6 HOH B 2 502 502 HOH HOH . 
N 6 HOH B 3 503 503 HOH HOH . 
N 6 HOH B 4 504 506 HOH HOH . 
N 6 HOH B 5 505 508 HOH HOH . 
N 6 HOH B 6 506 509 HOH HOH . 
N 6 HOH B 7 507 510 HOH HOH . 
N 6 HOH B 8 508 511 HOH HOH . 
N 6 HOH B 9 509 513 HOH HOH . 
N 6 HOH B 10 510 514 HOH HOH . 
N 6 HOH B 11 511 517 HOH HOH . 
N 6 HOH B 12 512 518 HOH HOH . 
N 6 HOH B 13 513 521 HOH HOH . 
N 6 HOH B 14 514 523 HOH HOH . 
N 6 HOH B 15 515 524 HOH HOH . 
N 6 HOH B 16 516 525 HOH HOH . 
N 6 HOH B 17 517 527 HOH HOH . 
N 6 HOH B 18 518 529 HOH HOH . 
N 6 HOH B 19 519 531 HOH HOH . 
N 6 HOH B 20 520 533 HOH HOH . 
N 6 HOH B 21 521 534 HOH HOH . 
N 6 HOH B 22 522 540 HOH HOH . 
N 6 HOH B 23 523 541 HOH HOH . 
N 6 HOH B 24 524 542 HOH HOH . 
N 6 HOH B 25 525 543 HOH HOH . 
N 6 HOH B 26 526 544 HOH HOH . 
N 6 HOH B 27 527 547 HOH HOH . 
N 6 HOH B 28 528 551 HOH HOH . 
N 6 HOH B 29 529 552 HOH HOH . 
N 6 HOH B 30 530 556 HOH HOH . 
N 6 HOH B 31 531 557 HOH HOH . 
N 6 HOH B 32 532 558 HOH HOH . 
N 6 HOH B 33 533 564 HOH HOH . 
N 6 HOH B 34 534 566 HOH HOH . 
N 6 HOH B 35 535 567 HOH HOH . 
N 6 HOH B 36 536 568 HOH HOH . 
N 6 HOH B 37 537 569 HOH HOH . 
N 6 HOH B 38 538 571 HOH HOH . 
N 6 HOH B 39 539 576 HOH HOH . 
N 6 HOH B 40 540 580 HOH HOH . 
N 6 HOH B 41 541 584 HOH HOH . 
N 6 HOH B 42 542 586 HOH HOH . 
N 6 HOH B 43 543 587 HOH HOH . 
N 6 HOH B 44 544 588 HOH HOH . 
N 6 HOH B 45 545 589 HOH HOH . 
N 6 HOH B 46 546 592 HOH HOH . 
N 6 HOH B 47 547 594 HOH HOH . 
N 6 HOH B 48 548 595 HOH HOH . 
N 6 HOH B 49 549 597 HOH HOH . 
N 6 HOH B 50 550 598 HOH HOH . 
N 6 HOH B 51 551 607 HOH HOH . 
N 6 HOH B 52 552 609 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . L 5 -3.579 -8.041 -51.857 1 22.06 ? P AMP 405 B 1 
HETATM 2 O O1P AMP . . . L 5 -4.813 -8.902 -51.824 1 22.38 ? O1P AMP 405 B 1 
HETATM 3 O O2P AMP . . . L 5 -3.527 -7.145 -53.058 1 25.31 ? O2P AMP 405 B 1 
HETATM 4 O O3P AMP . . . L 5 -3.24 -7.254 -50.591 1 22.5 ? O3P AMP 405 B 1 
HETATM 5 O O5' AMP . . . L 5 -2.328 -9.042 -52.038 1 19.51 ? O5' AMP 405 B 1 
HETATM 6 C C5' AMP . . . L 5 -2.103 -9.813 -53.194 1 21.15 ? C5' AMP 405 B 1 
HETATM 7 C C4' AMP . . . L 5 -1.081 -10.883 -52.829 1 24.17 ? C4' AMP 405 B 1 
HETATM 8 O O4' AMP . . . L 5 0.222 -10.307 -52.656 1 25.79 ? O4' AMP 405 B 1 
HETATM 9 C C3' AMP . . . L 5 -1.366 -11.542 -51.492 1 25.86 ? C3' AMP 405 B 1 
HETATM 10 O O3' AMP . . . L 5 -2.174 -12.713 -51.629 1 27.37 ? O3' AMP 405 B 1 
HETATM 11 C C2' AMP . . . L 5 0.013 -11.857 -50.921 1 25.28 ? C2' AMP 405 B 1 
HETATM 12 O O2' AMP . . . L 5 0.456 -13.177 -51.235 1 25.45 ? O2' AMP 405 B 1 
HETATM 13 C C1' AMP . . . L 5 0.922 -10.817 -51.526 1 23.24 ? C1' AMP 405 B 1 
HETATM 14 N N9 AMP . . . L 5 0.845 -9.833 -50.448 1 23.52 ? N9 AMP 405 B 1 
HETATM 15 C C8 AMP . . . L 5 0.045 -8.757 -50.408 1 22.84 ? C8 AMP 405 B 1 
HETATM 16 N N7 AMP . . . L 5 0.205 -8.088 -49.228 1 23.62 ? N7 AMP 405 B 1 
HETATM 17 C C5 AMP . . . L 5 1.109 -8.756 -48.505 1 23.6 ? C5 AMP 405 B 1 
HETATM 18 C C6 AMP . . . L 5 1.725 -8.608 -47.182 1 24.35 ? C6 AMP 405 B 1 
HETATM 19 N N6 AMP . . . L 5 1.378 -7.553 -46.408 1 24.76 ? N6 AMP 405 B 1 
HETATM 20 N N1 AMP . . . L 5 2.637 -9.534 -46.789 1 23.98 ? N1 AMP 405 B 1 
HETATM 21 C C2 AMP . . . L 5 2.975 -10.562 -47.569 1 23.69 ? C2 AMP 405 B 1 
HETATM 22 N N3 AMP . . . L 5 2.45 -10.753 -48.792 1 24.36 ? N3 AMP 405 B 1 
HETATM 23 C C4 AMP . . . L 5 1.527 -9.907 -49.303 1 24.18 ? C4 AMP 405 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#